Chapter 6 Analyses for Physiological and Behavioral Rhythmicity

Methods in Enzymology

Volumn 454, Issue C, 2009, Pages 141-174

  Dowse, Harold B ^a  

^a UNIVERSITY OF MAINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BEHAVIOR; CIRCADIAN RHYTHM; DIGITAL FILTERING; DROSOPHILA MELANOGASTER; FREQUENCY ANALYSIS; NONHUMAN; PHYSIOLOGY; PRIORITY JOURNAL; REVIEW; SIGNAL NOISE RATIO; SPECTROSCOPY; TIME PERCEPTION; ARTICLE; SIGNAL PROCESSING;

DROSOPHILA MELANOGASTER;

CIRCADIAN RHYTHM; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 59649115218     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)03806-8     Document Type: Review

References (65)

1. Ables J.G. Maximum entropy spectral analysis. Astron. Astrophys. Suppl. Ser. 15 (1974) 383-393
2. Alt S., Ringo J., Talyn B., Bray W., and Dowse H. The period gene controls courtship song cycles in Drosophila melanogaster. Anim. Behav. 56 (1998) 87-97
3. Andersen N. On the calculation of filter coefficients for maximum entropy spectral analysis. Geophysics 39 (1974) 69-72
4. Ashburner M. Drosophila, a Laboratory Manual (1989), Cold Spring Harbor Press, Cold Spring Harbor, NY
5. Ashcroft F. Ion Channels and Disease (2000), Academic Press, New York
6. Bodmer R., Wessels R.J., Johnson E., and Dowse H. Heart development and function. In: Gilbert L.I., Iatrou K., and Gill S. (Eds). Comprehensive Molecular Insect Science Vol. 2 (2004), Elsevier, New York
7. Burg J.P. Maximum entropy spectral analysis. In: Childers D.G. (Ed). Modern Spectrum Analysis (1967), Wiley, New York 34-41 (1978)
8. Burg J.P. A new analysis technique for time series data. In: Childers D.G. (Ed). Modern Spectrum Analysis (1968), Wiley, New York 42-48 (1978)
9. Burnet B., Eastwood L., and Connolly K. The courtship song of male Drosophila lacking aristae. Anim. Behav. 25 (1977) 460-464
10. Chatfield C. The Analysis of Time Series: An Introduction (1989), Chapman and Hall, London
11. Chui C.K. An Introduction to Wavelets (1992), Academic Press, New York
12. Cooley J.W., Lewis P.A.W., and Welch P.D. Historical notes on the fast Fourier transform. IEE Trans. Aud. Elect. AU15 (1969) 76-79
13. Curtis N., Ringo J., and Dowse H.B. Morphology of the pupal heart, adult heart, and associated tissues in the fruit fly, Drosophila melanogaster. J. Morphol. 240 (1999) 225-235
14. DeCoursey P. Phase control of activity in a rodent. In: Chovnik A. (Ed). Cold Spring Harbor Symposia on Quantitative Biology XXV (1960) 49-55
15. Dowse H. Statistical analysis of biological rhythm data. In: Rosato E. (Ed). Methods in Molecular Biology: Circadian Rhythms Vol. 362 (2007), Humana Press 29-45
16. Dowse H.B. Mid-range ultradian rhythms in Drosophila and the circadian clock problem. In: Lloyd D.L., and Rossi E. (Eds). Ultradian Rhythmicity in Biological Systems: An Inquiry into Fundamental Principles (2008), Springer Verlag, Berlin in press
17. Dowse H., and Ringo J. Further evidence that the circadian clock in Drosophila is a population of coupled ultradian oscillators. J. Biol. Rhythms 2 (1987) 65-76
18. Dowse H.B., Hall J.C., and Ringo J.M. Circadian and ultradian rhythms in period mutants of Drosophila melanogaster. Behav. Genet. 17 (1987) 19-35
19. Dowse H.B., and Ringo J.M. The search for hidden periodicities in biological time series revisited. J. Theor. Biol. 139 (1989) 487-515
20. Dowse H.B., and Ringo J.M. Comparisons between "periodograms" and spectral analysis: Apples are apples after all. J. Theor. Biol. 148 (1991) 139-144
21. Dowse H.B., and Ringo J.M. Summing locomotor activity into "bins": How to avoid artifact in spectral analysis. Biol. Rhythm Res. 25 (1994) 2-14
22. Dowse H.B., Ringo J.M., Power J., Johnson E., Kinney K., and White L. A congenital heart defect in Drosophila caused by an action potential mutation. J. Neurogenet. 10 (1995) 153-168
23. Dulcis D., and Levine R. Innervation of the heart of the adult fruit fly, Drosophila melanogaster. J. Comp. Neurol. 465 (2005) 560-578
24. Dunlap J. Molecular bases for circadian clocks. Cell 96 (1999) 271-290
25. Enright J.T. The search for rhythmicity in biological time-series. J. Theor. Biol. 8 (1965) 662-666
26. Enright J.T. A comparison of periodograms and spectral analysis: Don't expect apples to taste like oranges. J. Theor. Biol. 143 (1990) 425-430
27. Glass L., and Mackey M.C. From Clocks to Chaos: The Rhythms of Life (1988), Princeton Univ. Press, Princeton, NJ
28. Gorczyca M., and Hall J.C. The INSECTAVOX, and integrated device for recording and amplifying courtship songs. Drosophila Inform. Serv. 66 (1987) 157-160
29. Gu G.-G., and Singh S. Pharmacological analysis of heartbeat in Drosophila. J. Neurobiol. 28 (1995) 269-280
30. Hall J. Genetics and Molecular Biology of Rhythms in Drosophila and Other Insects (2003), Academic Press, New York
31. Hamblen-Coyle M., Konopka R.R., Zwiebel L.J., Colot H.V., Dowse H.B., Rosbash M.R., and Hall J.C. A new mutation at the period locus of Drosophila melanogaster with some novel effects on circadian rhythms. J. Neurogenet. 5 (1989) 229-256
32. Hamming R.W. Digital Filters (1983), Prentice-Hall, New York
33. Hille B. Ion Channels of Excitable Membranes (2001), Sinauer, Sunderland, MA
34. Johnson E., Ringo J., Bray N., and Dowse H. Genetic and pharmacological identification of ion channels central to Drosophila's cardiac pacemaker. J. Neurogenet. 12 (1998) 1-24
35. Johnson E., Ringo J., and Dowse H. Modulation of Drosophila heartbeat by neurotransmitters. J. Comp. Physiol. B 167 (1997) 89-97
36. Jones J. The Circulatory System of Insects (1977), Charles C. Thomas, Springfield, IL
37. Kay S.M., and Marple Jr. S.G. Spectrum analysis, a modern perspective. IEEE Proc. 69 (1981) 1380-1419
38. Kendall M.G. Contributions to the study of oscillatory time series (1946), Cambridge Univ. Press, Cambridge
39. Konopka R.J., and Benzer S. Clock mutants of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 68 (1971) 2112-2116
40. Kyriacou C.P., and Hall J.C. Circadian rhythm mutation in Drosophila melanogaster affects short-term fluctuations in the male's courtship song. Proc. Natl. Acad. Sci. USA 77 (1980) 6729-6733
41. Kyriacou C.P., and Hall J.C. The function of courtship song rhythms in Drosophila. Anim. Behav. 30 (1982) 794-801
42. Kyriacou C.P., and Hall J.C. Learning and memory mutations impair acoustic priming of mating behaviour in Drosophila. Nature 308 (1984) 62-64
43. Lanczos C. Applied Analysis (1956), Prentice Hall, New York
44. Lanczos C. Discourse on Fourier Series (1966), Oliver and Boyd, Edinburgh
45. Levine J., Funes P., Dowse H., and Hall J. Signal Analysis of Behavioral and Molecular Cycles. Biomed. Central. Neurosci. 3 (2002) 1
46. Lindsley G., Dowse H., Burgoon P., Kilka M., and Stephenson L. A persistent circhoral ultradian rhythm is identified in human core temperature. Chronobiol. Int. 16 (1999) 69-78
47. Lombardi F. Chaos theory, heart rate variability, and arrhythmic mortality. Circulation 101 (2000) 8-10
48. Osaka M., Kumagai H., Katsufumi S., Onami T., Chon K., and Wantanabe M. Low-order chaos in sympatheic nerve activity and scaling of heartbeat intervals. Phys. Rev. E 67 (2003) 1-4104915
49. Palmer J.D. The Living Clock (2002), Oxford Univ. Press, London
50. Palmer J.D., Williams B.G., and Dowse H.B. The statistical analysis of tidal rhythms: Tests of the relative effectiveness of five methods using model simulations and actual data. Mar. Behav. Physiol. 24 (1994) 165-182
51. Rizki T. The circulatory system and associated cells and tissues. In: Ashburner M., and Wright T.R.F. (Eds). The Genetics and Biology of Drosophila (1978), Academic Press, New York 1839-1845
52. In: Ruskai M., Beylkin G., Coifman R., Daubechies I., Mallat S., Meyer Y., and Raphael L. (Eds). Wavelets and Their Applications (1992), Jones & Bartlett, Boston
53. 2+-ATPase, alter heart rate and rhythmicity in Drosophila. J. Comp. Physiol. B 176 (2005) 253-263
54. Schefler W. Statistics for the Biological Sciences (1969), Addison Wesley, Reading, MA
55. Schuster A. On the investigation of hidden periodicities with application to a supposed 26-day period of meterological phenomena. Terrestrial Magn. Atmos. Electr. 3 (1898) 13-41
56. Shorey H.H. Nature of sound produced by Drosophila during courtship. Science 137 (1962) 677-678
57. Spieth H., and Ringo J.M. Mating behavior and sexual isolation in Drosophila. In: Ashburner M., Carson H., and Thompson J. (Eds). The Genetics and Biology of Drosophila (1983), Academic Press, New York
58. Talyn B., and Dowse H. The role of courtship song in sexual selection and species recognition by female Drosophila melanogaster. Anim. Behav. 68 (2004) 1165-1180
59. Ulrych T., and Bishop T. Maximum entropy spectral analysis and autoregressive decomposition. Rev. Geophys. Space Phys. 13 (1975) 183-300
60. von Schilcher F. The function of pulse song and sine song in the courtship of Drosophila melanogaster. Anim. Behav. 24 (1976) 622-625
61. Wasserthal L. Drosophila flies combine periodic heartbeat reversal with a circulation in the anterior body mediated by a newly discovered anterior pair of ostial valves and 'venous' channels. J. Exp. Biol. 210 (2007) 3703-3719
62. Welch P. The use of Fast Fourier Transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms. IEEE Trans. Audio Electroacoust. AU-15 (1967) 70-73
63. Whitaker E., and Robinson G. The Calculus of Observations (1924), Blackie, Glasgow
64. Wiener N. Extrapolation, Interpolation, and Smoothing of Stationary Time-Series (1949), MIT Press, Cambridge, MA
65. Wolf M., Amrein H., Izatt J., Choma M., Reedy M., and Rockman H. Drosphila as a model for the identification of genes causing adult human heart disease. Proc. Nat. Acad. Sci. USA 103 (2006) 1394-1399