Ancestral Asian source(s) of new world Y-chromosome founder haplotypes

American Journal of Human Genetics

Volumn 64, Issue 3, 1999, Pages 817-831

  Karafet, T M ^a,b   Zegura, S L ^a   Posukh, O ^b   Osipova, L ^b   Bergen, A ^h   Long, J ^h   Goldman, D ^h   Klitz, W ^c   Harihara, S ^d   De Knijff, P ^e   Wiebe, V ^b   Griffiths, R C ^f   Templeton, A R ^g   Hammer, M F ^a  

^a UNIVERSITY OF ARIZONA   (United States)

^b INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF TOKYO   (Japan)

^e LEIDEN UNIVERSITY   (Netherlands)

^f MONASH UNIVERSITY   (Australia)

^g WASHINGTON UNIVERSITY   (United States)

^h NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME POLYMORPHISM; DNA DETERMINATION; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; MALE; PRIORITY JOURNAL; STATISTICAL ANALYSIS; Y CHROMOSOME;

EID: 0033364960     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/302282     Document Type: Article

References (49)

1. Bamshad MJ, Watkins WS, Dixon ME, Jorde LB, Rao BB, Naidu JM, Prasad BV, et al (1998) Female gene flow stratifies Hindu castes. Nature 395:651-652
2. Bergen A, Wang C-Y, Jefferson K, Dey C, Smith KD, Park S-C, Tsai S-J, et al. An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping. Ann Hum Genet (in press)
3. Bianchi NO, Bailliet G, Bravi CM, Carnese RF, Rothhammer F, Martinez-Marignac VL, Pena SDJ (1997) Origin of Amerindian Y-chromosomes as inferred by the analysis of six polymorphic markers. Am J Phys Anthropol 102:79-89
4. Cann RL, Stoneking M, Wilson AC (1987) Mitochondrial DNA and human evolution. Nature 325:31-36
5. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton University Press, Princeton
6. Forster P, Harding R, Torroni A, Bandelt H-J (1996) Origin and evolution of Native American mtDNA variation: a reappraisal. Am J Hum Genet 59:935-945
7. Greenberg JH (1987) Language in the Americas. Stanford University Press, Stanford
8. -(1996) The linguistic evidence. In: West FH (ed) American beginnings: the prehistory and palaeoecology of Beringia. University of Chicago Press, Chicago, pp 525-536
9. Greenberg JH, Turner CG, Zegura SL (1986) The settlement of the Americas: a comparison of the linguistic, dental, and genetic evidence. Curr Anthropol 27:477-497
10. Griffiths RC, Tavare S (1994) Ancestral inference in population genetics. Stat Sci 9:307-319
11. Hajdü P (1975) Finno-Ugrian languages and peoples. Deutsch, London
12. Hammer MF, Horai S (1995) Y chromosomal DNA variation and the peopling of Japan. Am J Hum Genet 56:951-962
13. Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins, T, Griffiths RC, et al (1998) Out of Africa and back again: nested cladistic analysis of human Y chromosome variation. Mol Biol Evol 15:427-441
14. Hammer MF, Spurdle AB, Karafet T, Bonner MR, Wood ET, Novelletto A, Malaspina P, et al (1997) The geographic distribution of human Y chromosome variation. Genetics 145: 787-805
15. Hammer MF, Zegura SL (1996) The role of the Y chromosome in human evolutionary studies. Evol Anthropol 5:116-134
16. Harding RM, Fullerton SM, Griffiths RC, Bond J, Cox MJ, Schneider JA, Moulin DS, et al (1997) Archaic African and Asian lineages in the genetic ancestry of modern humans. Am J Hum Genet 60:772-789
17. Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST (1998) Genetic traces of ancient demography. Proc Natl Acad Sci USA 95:1961-1967
18. Harpending H, Jenkins T (1973) Genetic distance among southern African populations. In: Crawford MH, Workman PL (eds) Methods and theories of anthropological genetics. University of New Mexico Press, Albuquerque, pp 177-199
19. Harpending H, Rogers A (1984) Antana: a package for multivariate data analysis. Department of Anthropology, University of Utah, Salt Lake City
20. Horai S, Kondo R, Nakagawa-Hattori Y, Hayashi S, Sonoda S, Tajima K (1993) Peopling of the Americas, founded by four major lineages of mitochondrial DNA, Mol Biol Evol 10:23-47
21. Karafet T, de Knijff P, Wood E, Ragland J, Clarke A, Hammer MF (1998) Different patterns of variation at the X-and Y-chromosome linked microsatellite loci DXYS156X and DXYS156Y in human populations. Hum Biol 70:979-992
22. Karafet T, Osipova LP, Posukh OL, Wiebe V, Hammer MF (1999) Y chromosome microsatellite haplotypes and the history of Samoyed-speaking populations in Northwest Siberia. In: Goldstein DB, Schlötterer C (eds) Microsatellites: evolution and applications. Oxford University Press, Oxford (in press)
23. Karafet T, Zegura SL, Vuturo-Brady J, Posukh O, Osipova L, Weibe V, Romero F, et al (1997) Y chromosome markers and trans-Bering Strait dispersals. Am J Phys Anthropol 102: 301-314
24. Kolman CJ, Sambuughin N, Bermingham E (1996) Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142:1321-1334
25. Lell JT, Brown MD, Schurr TG, Sukernik RI, Starikovskaya YB, Torroni A, Moore LG, et al (1997) Y chromosome polymorphisms in native American and Siberian populations: identification of native American Y chromosome haplotypes. Hum Genet 100:536-543
26. Levin MG, Potapov LP (1964) The peoples of Siberia. University of Chicago Press, Chicago
27. Lorenz JG, Smith DG (1994) Distribution of the 9-bp mitochondrial DNA region V deletion among North American Indians. Hum Biol 66:777-788
28. Merriwether DA, Rothhammer F, Ferrell RE (1995) Distribution of the four founding lineage haplotypes in Native Americans suggests a single wave of migration for the New World. Am J Phys Anthropol 98:411-430
29. Morell V (1998) Kennewick man's trials continue. Science 280: 190-192
30. Popov AA, Dolgikh BO (1964) The Kets. In: Levin MG, Porapov LP (eds) The peoples of Siberia. University of Chicago Press, Chicago, pp 607-619
31. Prokof'yeva ED (1964) The Selkups. In: Levin MG, Potapov LP (eds) The peoples of Siberia. University of Chicago Press, Chicago, pp 587-606
32. Reed TE (1969) Caucasian genes in American Negroes. Science 165:762-768
33. Santos FR, Rodriguez-Delfin L, Pena SDJ, Moore J, Weiss KM (1996) North and South Amerindians may have the same major founder Y chromosome haplotype. Am J Hum Genet 58:1369-1370
34. Scielstad MT, Minch E, Cavalli-Sforza LL (1998) Genetic evidence for a higher female migration rate in humans. Nat Genet 20:278-80
35. Shields GF, Schmiechen AM, Frazier BL, Redd A, Voevoda MI, Reed JK, Ward RH (1993) mtDNA sequences suggest a recent evolutionary divergence for Beringian and northern North American populations. Am J Hum Genet 53:549-562
36. Stone AC, Stoneking M (1998) mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. Am J Hum Genet 62:1153-1170
37. Swofford D (1990) PAUP: phylogenetic analysis using parsimony. Illinois Natural History Survey, University of Illinois, Champaign-Urbana
38. Szathmary EJE (1993) mtDNA and the peopling of the Americas. Am J Hum Genet 53:793-799
39. Templeton AR (1998a) Human races: a genetic and evolutionary perspective. In: Sussman RW (ed) The biological basis of human behavior: a critical review. Washington University Press, St Louis, pp 180-192
40. -(1998b) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7:381-397
41. Templeton AR, Routman E, Phillips CA (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782
42. Torroni A, Neel JV, Barrantes R, Schurr TG, Wallace DC (1994) Mitochondrial DNA "clock" for the Amerinds and its implications for timing their entry into North America. Proc Natl Acad Sci USA 91:1158-1162
43. Torroni A, Schurr TG, Cabell MF, Brown MD, Neel JV, Larsen M, Smith DG, et al (1993a) Asian affinities and continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53:563-590
44. Torroni A, Schurr TG, Yang C-C, Szathmary EJE, Williams RC, Schanfield MS, Troup GA, et al (1992) Native American mitochondrial DNA analysis indicates that the Amerind and the Nadene populations were founded by two independent migrations. Genetics 130:153-162
45. Torroni A, Sukernik RI, Schurr TG, Starikovskaya YB, Cabell MF, Crawford MH, Comuzzie AG, et al (1993b) mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans, Am J Hum Genet 53: 591-608
46. Underhill PA, Jin L, Lin AA, Mehdi SQ, Jenkins T, Vollrath D, Davis RW, et al (1997) Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Genome Res 7:996-1005
47. Underhill PA, Jin L, Zemans R, Ocfner PJ, Cavalli-Sforza LL (1996) A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history. Proc Natl Acad Sci USA 93:196-200
48. Whitfield LS, Sulston JE, Goodfellow PN (1995) Sequence variation of the human Y chromosome. Nature 378:379-380
49. Zerjal T, Dashnyam B, Pandya A, Kayser M, Roewer L, Santos FR, Schiefenhövel W, et al (1997) Genetic relationships of Asians and northern Europeans, revealed by Y-chromosomal DNA analysis. Am J Hum Genet 60:1174-1183