메뉴 건너뛰기




Volumn 74, Issue 2, 2009, Pages 475-488

Characterization of the outer membrane protein OprF of Pseudomonas aeruginosa in a lipopolysaccharide membrane by computer simulation

Author keywords

Lipopolysaccharide; Molecular dynamics simulation; OprF N terminal domain; Outer membrane protein

Indexed keywords

BACTERIUM LIPOPOLYSACCHARIDE; OUTER MEMBRANE PROTEIN; OUTER MEMBRANE PROTEIN A; OUTER MEMBRANE PROTEIN OPRF; UNCLASSIFIED DRUG; LIPOPOLYSACCHARIDE;

EID: 59449101766     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22165     Document Type: Article
Times cited : (51)

References (48)
  • 1
    • 0034329547 scopus 로고    scopus 로고
    • The role of the CFTR in susceptibility to Pseudomonas aeruginosa infections in cystic fibrosis
    • Goldberg JB, Pier GB. The role of the CFTR in susceptibility to Pseudomonas aeruginosa infections in cystic fibrosis. Trends Microbiol 2000;8:514-520.
    • (2000) Trends Microbiol , vol.8 , pp. 514-520
    • Goldberg, J.B.1    Pier, G.B.2
  • 4
    • 0030994616 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa lipopolysaccharide binds galectin-3 and other human corneal epithelial proteins
    • Gupta SK, Masinick S, Garrett M, Hazlett LD. Pseudomonas aeruginosa lipopolysaccharide binds galectin-3 and other human corneal epithelial proteins. Infect Immun 1997;65:2747-2753.
    • (1997) Infect Immun , vol.65 , pp. 2747-2753
    • Gupta, S.K.1    Masinick, S.2    Garrett, M.3    Hazlett, L.D.4
  • 5
    • 0027965197 scopus 로고
    • Immunogenic and antigenic properties of a heptavalent high-molecular-weight O-polysaccharide vaccine derived from Pseudomonas aeruginosa
    • Hatano K, Boisot S, Desjardins D, Wright DC, Brisker J, Pier GB. Immunogenic and antigenic properties of a heptavalent high-molecular-weight O-polysaccharide vaccine derived from Pseudomonas aeruginosa. Infect Immun 1994;62:3608-3616.
    • (1994) Infect Immun , vol.62 , pp. 3608-3616
    • Hatano, K.1    Boisot, S.2    Desjardins, D.3    Wright, D.C.4    Brisker, J.5    Pier, G.B.6
  • 6
    • 0035077840 scopus 로고    scopus 로고
    • Human monoclonal antibodies against Pseudomonas aeruginosa lipopolysaccharide derived from transgenic mice containing megabase human immunoglobulin loci are opsonic and protective against fatal Pseudomonas sepsis
    • Hemachandra S, Kamboj K, Copfer J, Pier G, Green LL, Schreiber JR. Human monoclonal antibodies against Pseudomonas aeruginosa lipopolysaccharide derived from transgenic mice containing megabase human immunoglobulin loci are opsonic and protective against fatal Pseudomonas sepsis. Infect Immun 2001;69:2223-2229.
    • (2001) Infect Immun , vol.69 , pp. 2223-2229
    • Hemachandra, S.1    Kamboj, K.2    Copfer, J.3    Pier, G.4    Green, L.L.5    Schreiber, J.R.6
  • 7
    • 0345097431 scopus 로고    scopus 로고
    • Promises and pitfalls of Pseudomonas aeruginosa lipopoly- saccharide as a vaccine antigen
    • Pier GB. Promises and pitfalls of Pseudomonas aeruginosa lipopoly- saccharide as a vaccine antigen. Carbohydr Res 2003;338:2549-2556.
    • (2003) Carbohydr Res , vol.338 , pp. 2549-2556
    • Pier, G.B.1
  • 8
    • 0034462891 scopus 로고    scopus 로고
    • Brinkman FSL, Bains M, Hancock REW. The amino terminus of Pseudomonas aeruginosa outer membrane protein OprF forms channels in lipid bilayer membranes: correlation with a three-dimensional model (182, p 5251, 2000). J Bacteriol 2000;182:6863-6863.
    • Brinkman FSL, Bains M, Hancock REW. The amino terminus of Pseudomonas aeruginosa outer membrane protein OprF forms channels in lipid bilayer membranes: correlation with a three-dimensional model (vol. 182, p 5251, 2000). J Bacteriol 2000;182:6863-6863.
  • 9
    • 0034724567 scopus 로고    scopus 로고
    • High-resolution structure of the OmpA membrane domain
    • Pautsch A, Schulz GE. High-resolution structure of the OmpA membrane domain. J Mol Biol 2000;298:273-282.
    • (2000) J Mol Biol , vol.298 , pp. 273-282
    • Pautsch, A.1    Schulz, G.E.2
  • 10
    • 0031733336 scopus 로고    scopus 로고
    • Structure of the outer membrane protein A transmembrane domain
    • Pautsch A, Schulz GE. Structure of the outer membrane protein A transmembrane domain. Nat Struct Biol 1998;5:1013-1017.
    • (1998) Nat Struct Biol , vol.5 , pp. 1013-1017
    • Pautsch, A.1    Schulz, G.E.2
  • 11
    • 33745218065 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa porin Opr F exists in two different conformations
    • Sugawara E, Nestorovich EM, Bezrukov SM, Nikaido H. Pseudomonas aeruginosa porin Opr F exists in two different conformations J Biol Chem 2006;281:16220-16229.
    • (2006) J Biol Chem , vol.281 , pp. 16220-16229
    • Sugawara, E.1    Nestorovich, E.M.2    Bezrukov, S.M.3    Nikaido, H.4
  • 12
    • 0022534371 scopus 로고
    • Gentamicin interaction with Pseudomonas aeruginosa cell-envelope
    • Martin NL, Beveridge TJ. Gentamicin interaction with Pseudomonas aeruginosa cell-envelope. Antimicrob Agents Chemother 1986;29:1079-1087.
    • (1986) Antimicrob Agents Chemother , vol.29 , pp. 1079-1087
    • Martin, N.L.1    Beveridge, T.J.2
  • 13
    • 0033952321 scopus 로고    scopus 로고
    • Walsh AG, Matewish MJ, Burrows LL, Monteiro MA, Perry MB, Lam JS. Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa.Mol Microbiol 2000;35:718-727.
    • Walsh AG, Matewish MJ, Burrows LL, Monteiro MA, Perry MB, Lam JS. Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa.Mol Microbiol 2000;35:718-727.
  • 15
    • 0028927372 scopus 로고
    • Outer-membrane proteins responsible for multiple-drug resistance in Pseudomonas aeruginosa
    • Masuda N, Sakagawa E, Ohya S. Outer-membrane proteins responsible for multiple-drug resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother 1995;39:645-649.
    • (1995) Antimicrob Agents Chemother , vol.39 , pp. 645-649
    • Masuda, N.1    Sakagawa, E.2    Ohya, S.3
  • 16
    • 0037485850 scopus 로고    scopus 로고
    • A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA
    • Baaden M, Meier C, Sansom MSP. A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA. J Mol Biol 2003;331:177-189.
    • (2003) J Mol Biol , vol.331 , pp. 177-189
    • Baaden, M.1    Meier, C.2    Sansom, M.S.P.3
  • 17
    • 0033615325 scopus 로고    scopus 로고
    • Dynamics of the lipopolysaccharide assembly on the surface of Escherichia coli
    • Kotra LP, Golemi D, Amro NA, Liu GY, Mobashery S. Dynamics of the lipopolysaccharide assembly on the surface of Escherichia coli. J Am Chem Soc 1999;121:8707-8711.
    • (1999) J Am Chem Soc , vol.121 , pp. 8707-8711
    • Kotra, L.P.1    Golemi, D.2    Amro, N.A.3    Liu, G.Y.4    Mobashery, S.5
  • 19
    • 0026751904 scopus 로고
    • Molecular modeling of the 3-dimensional structure and conformational flexibility of bacterial lipopolysaccharide
    • Kastowsky M, Gutberlet T, Bradaczek H. Molecular modeling of the 3-dimensional structure and conformational flexibility of bacterial lipopolysaccharide. J Bacteriol 1992;174:4798-4806.
    • (1992) J Bacteriol , vol.174 , pp. 4798-4806
    • Kastowsky, M.1    Gutberlet, T.2    Bradaczek, H.3
  • 20
    • 0034907678 scopus 로고    scopus 로고
    • Computer simulation of the rough lipopoly-saccharide membrane of Pseudomonas aeruginosa
    • Lins RD, Straatsma TP. Computer simulation of the rough lipopoly-saccharide membrane of Pseudomonas aeruginosa. Biophys J 2001; 81:1037-1046.
    • (2001) Biophys J , vol.81 , pp. 1037-1046
    • Lins, R.D.1    Straatsma, T.P.2
  • 21
    • 38849095175 scopus 로고    scopus 로고
    • Characterization of Uranyl Uptake by the rough lipopolysaccharide membrane of Pseudomonas aeruginosa
    • Lins RD, Vorpagel ER, Guglielmi M, Straatsma TP. Characterization of Uranyl Uptake by the rough lipopolysaccharide membrane of Pseudomonas aeruginosa. Biomacromolecules 2008;9:29-35.
    • (2008) Biomacromolecules , vol.9 , pp. 29-35
    • Lins, R.D.1    Vorpagel, E.R.2    Guglielmi, M.3    Straatsma, T.P.4
  • 22
    • 0034962998 scopus 로고    scopus 로고
    • Load balancing of molecular dynamics simulation with NWChem
    • Straatsma TP, McCammon JA. Load balancing of molecular dynamics simulation with NWChem. IBM Syst J 2001;40:328-341.
    • (2001) IBM Syst J , vol.40 , pp. 328-341
    • Straatsma, T.P.1    McCammon, J.A.2
  • 24
    • 0037114710 scopus 로고    scopus 로고
    • Molecular structure of the outer bacterial membrane of Pseudomonas aeruginosa via classical simulation
    • Shroll RM, Straatsma TP. Molecular structure of the outer bacterial membrane of Pseudomonas aeruginosa via classical simulation. Biopolymers 2002;65:395-407.
    • (2002) Biopolymers , vol.65 , pp. 395-407
    • Shroll, R.M.1    Straatsma, T.P.2
  • 25
    • 0037339491 scopus 로고    scopus 로고
    • Molecular basis for microbial adhesion to geochemical surfaces: Computer simulation of Pseudomonas aeruginosa adhesion to goethite
    • Shroll RM, Straatsma TP. Molecular basis for microbial adhesion to geochemical surfaces: computer simulation of Pseudomonas aeruginosa adhesion to goethite. Biophys J 2003;84:1765-1772.
    • (2003) Biophys J , vol.84 , pp. 1765-1772
    • Shroll, R.M.1    Straatsma, T.P.2
  • 26
  • 27
    • 0028321391 scopus 로고
    • OmpA protein of Escherichia coli outer-membrane occurs in open and closed channel forms
    • Sugawara E, Nikaido H. OmpA protein of Escherichia coli outer-membrane occurs in open and closed channel forms. J Biol Chem 1994;269:17981-17987.
    • (1994) J Biol Chem , vol.269 , pp. 17981-17987
    • Sugawara, E.1    Nikaido, H.2
  • 28
    • 0029823940 scopus 로고    scopus 로고
    • Secondary structure of the outer membrane proteins OmpA of Escherichia coli and OprF of Pseudomonas aeruginosa
    • Sugawara E, Steiert M, Rouhani S, Nikaido H. Secondary structure of the outer membrane proteins OmpA of Escherichia coli and OprF of Pseudomonas aeruginosa. J Bacteriol 1996;178:6067-6069.
    • (1996) J Bacteriol , vol.178 , pp. 6067-6069
    • Sugawara, E.1    Steiert, M.2    Rouhani, S.3    Nikaido, H.4
  • 29
    • 0032447956 scopus 로고    scopus 로고
    • Roles of the carboxy-terminal half of Pseudomonas aeruginosa major outer membrane protein OprF in cell shape, growth in los-osmolarity medium, and peptidoglycan association
    • Rawling EG, Brinkman FSL, Hancock REW. Roles of the carboxy-terminal half of Pseudomonas aeruginosa major outer membrane protein OprF in cell shape, growth in los-osmolarity medium, and peptidoglycan association. J Bacteriol 1998;180:3556-3562.
    • (1998) J Bacteriol , vol.180 , pp. 3556-3562
    • Rawling, E.G.1    Brinkman, F.S.L.2    Hancock, R.E.W.3
  • 30
    • 0024401938 scopus 로고
    • Pseudomonas aeruginosa outer-membrane protein-f-structural role and relationship to the Escherichia coli OmpA protein
    • Woodruff WA, Hancock REW. Pseudomonas aeruginosa outer-membrane protein-f-structural role and relationship to the Escherichia coli OmpA protein. J Bacteriol 1989;171:3304-3309.
    • (1989) J Bacteriol , vol.171 , pp. 3304-3309
    • Woodruff, W.A.1    Hancock, R.E.W.2
  • 31
    • 33645038628 scopus 로고    scopus 로고
    • Modeling and simulations of a bacterial outer membrane protein: OprF from Pseudomonas aeruginosa
    • Khalid S, Bond PJ, Deol SS, Sansom MSP. Modeling and simulations of a bacterial outer membrane protein: OprF from Pseudomonas aeruginosa. Proteins: Struct Funct Bioinformat 2006;63:6-15.
    • (2006) Proteins: Struct Funct Bioinformat , vol.63 , pp. 6-15
    • Khalid, S.1    Bond, P.J.2    Deol, S.S.3    Sansom, M.S.P.4
  • 32
    • 60349113879 scopus 로고    scopus 로고
    • Towards simulations of outer membrane proteins in lipopolysaccharide membranes
    • Soares TA, Straatsma TP. Towards simulations of outer membrane proteins in lipopolysaccharide membranes. AIP Conf Proc 2007; 963 V2B:1375-1378.
    • (2007) AIP Conf Proc , vol.V2B , Issue.963 , pp. 1375-1378
    • Soares, T.A.1    Straatsma, T.P.2
  • 33
    • 45849124632 scopus 로고    scopus 로고
    • Assessment of the convergence of molecular dynamics simulations of lipopolysaccharide membranes
    • Soares TA, Straatsma TP. Assessment of the convergence of molecular dynamics simulations of lipopolysaccharide membranes. Mol Simul 2008;34:295-307.
    • (2008) Mol Simul , vol.34 , pp. 295-307
    • Soares, T.A.1    Straatsma, T.P.2
  • 34
    • 65349161375 scopus 로고    scopus 로고
    • Data intensive analysis of biomolecular simulations
    • Straatsma TP. Data intensive analysis of biomolecular simulations. AIP Conf Proc 2007;963 V2B:1379-1382.
    • (2007) AIP Conf Proc , vol.V2B , Issue.963 , pp. 1379-1382
    • Straatsma, T.P.1
  • 35
    • 33751155339 scopus 로고
    • Molecular mechanical and molecular dynamical simulations of glycoproteins and oligosaccharides. I. GLYCAM-93 parameter development
    • Woods RJ, Dwek RA, Edge CJ, Fraserreid B. Molecular mechanical and molecular dynamical simulations of glycoproteins and oligosaccharides. I. GLYCAM-93 parameter development. J Phys Chem 1995;99:3832-3846.
    • (1995) J Phys Chem , vol.99 , pp. 3832-3846
    • Woods, R.J.1    Dwek, R.A.2    Edge, C.J.3    Fraserreid, B.4
  • 38
    • 33646940952 scopus 로고
    • Numerical integration of Cartesian equations of motion of a system with constraints-molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of Cartesian equations of motion of a system with constraints-molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 40
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure-pattern- recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C. Dictionary of protein secondary structure-pattern- recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 41
    • 0030404988 scopus 로고    scopus 로고
    • Smart OS, Neduvelil JG, Wang X, Wallace BA, Sansom MSP HOLE: a program for the analysis of the pore dimensions of ion channel structural models. J Mol Graph Model 1996;14:354-360.
    • Smart OS, Neduvelil JG, Wang X, Wallace BA, Sansom MSP HOLE: a program for the analysis of the pore dimensions of ion channel structural models. J Mol Graph Model 1996;14:354-360.
  • 43
    • 0034695070 scopus 로고    scopus 로고
    • Involvement of the C-terminal part of Pseudomonas fluorescens OprF in the modulation of its pore-forming properties
    • El Hamel C, Freulet MA, Jaquinod M, De E, Molle G, Orange N. Involvement of the C-terminal part of Pseudomonas fluorescens OprF in the modulation of its pore-forming properties. Biochim Biophys Acta: Biomembr 1509(1/2):237-244, 2000.
    • (2000) Biochim Biophys Acta: Biomembr , vol.1509 , Issue.1-2 , pp. 237-244
    • El Hamel, C.1    Freulet, M.A.2    Jaquinod, M.3    De, E.4    Molle, G.5    Orange, N.6
  • 44
    • 0034528915 scopus 로고    scopus 로고
    • Evidence for association of lipopolysaccharide with Pseudomonas fluorescens strain MF0 porin OprF
    • Freulet-Marriere MA, El Hamel C, Chevalier S, De E, Molle G, Orange N. Evidence for association of lipopolysaccharide with Pseudomonas fluorescens strain MF0 porin OprF. Res Microbiol 2000;151:873-876.
    • (2000) Res Microbiol , vol.151 , pp. 873-876
    • Freulet-Marriere, M.A.1    El Hamel, C.2    Chevalier, S.3    De, E.4    Molle, G.5    Orange, N.6
  • 45
    • 0034666641 scopus 로고    scopus 로고
    • Ion channel formation by N-terminal domain: A common feature of OprFs of Pseudomonas and OmpA of Escherichia coli
    • Saint N, El Hamel C, De E, Molle G. Ion channel formation by N-terminal domain: a common feature of OprFs of Pseudomonas and OmpA of Escherichia coli. FEMS Microbiol Lett 2000;190:261-265.
    • (2000) FEMS Microbiol Lett , vol.190 , pp. 261-265
    • Saint, N.1    El Hamel, C.2    De, E.3    Molle, G.4
  • 46
    • 0026920329 scopus 로고
    • Electrostatic potential barrier in asymmetric planar lipopolysaccharide phospholipid-bilayers probed with the valinomycin-k+ complex. Z Fur Naturforsch C
    • Seydel U, Eberstein W, Schroder G, Brandenburg K. Electrostatic potential barrier in asymmetric planar lipopolysaccharide phospholipid-bilayers probed with the valinomycin-k+ complex. Z Fur Naturforsch C: Biosci 1992;47(9/10):757-761.
    • (1992) Biosci , vol.47 , Issue.9-10 , pp. 757-761
    • Seydel, U.1    Eberstein, W.2    Schroder, G.3    Brandenburg, K.4
  • 47
  • 48
    • 41149162204 scopus 로고    scopus 로고
    • Influence of the B-band O-antigen chain in the structure and electrostatics of the lipopolysaccharide membrane of Pseudomonas aeruginosa
    • Soares TA, Straatsma TP, Lins RD. Influence of the B-band O-antigen chain in the structure and electrostatics of the lipopolysaccharide membrane of Pseudomonas aeruginosa. J Braz Chem Soc 2008;19:312-320.
    • (2008) J Braz Chem Soc , vol.19 , pp. 312-320
    • Soares, T.A.1    Straatsma, T.P.2    Lins, R.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.