Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers

Molecular Genetics and Genomics

Volumn 281, Issue 2, 2009, Pages 181-191

  Francki, Michael G ^a,c   Walker, Esther ^a,b   Crawford, Allison C ^a,b,c   Broughton, Sue ^a   Ohm, Herbert W ^d   Barclay, Iain ^a   Wilson, Robin E ^a   McLean, Robyn ^a  

^a DEPARTMENT OF AGRICULTURE AND FOOD WESTERN AUSTRALIA   (Australia)

^b MURDOCH UNIVERSITY   (Australia)

^c Value Added Wheat Cooperative Research Centre   (Australia)

^d PURDUE UNIVERSITY   (United States)

Author keywords

Doubled haploid; Marker clustering; Methylation; Recombinant inbred line; Segregation distortion

Indexed keywords

ARTICLE; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DNA METHYLATION; GENE CLUSTER; GENE DELETION; GENE MAPPING; GENETIC RECOMBINATION; GENOME; HEXAPLOIDY; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; SIMPLE SEQUENCE REPEAT; WHEAT;

CHROMOSOME MAPPING; GENETIC MARKERS; GENOTYPE; POLYPLOIDY; RECOMBINATION, GENETIC; TRITICUM;

TRITICUM AESTIVUM;

EID: 59449101593     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-008-0403-9     Document Type: Article

References (67)

1. TB Adhikari H Wallwork SB Goodwin 2004 Microsatellite markers linked to the Stb2 and Stb3 genes for resistance to Septoria tritici blotch in wheat Crop Sci 44 1403 1411
2. M Akbari P Wenzl V Caig J Carling L Xia SY Yang G Uszynski V Mohler A Lehmensiek H Kuchel MJ Hayden N Howes P Sharp P Vaughan B Rathmell E Huttner A Kilian 2006 Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome Theor Appl Genet 113 1409 1420
3. A Blanco MP Bellomo A Cenci C De Giovanni R D'Ovidio E Iacono B Laddomada MA Pagnotta E Porceddu A Sciancalepore R Simeone OA Tanzarella 1998 A genetic linkage map of durum wheat Theor Appl Genet 97 721 728
4. GJ Bryan AJ Collins P Stephenson A Orry JB Smith MD Gale 1997 Isolation and characterisation of microsatellites from hexaploid bread wheat Theor Appl Genet 94 557 563
5. T Cadalen C Boeuf S Bernard M Bernard 1997 An intervarietal molecular marker map in Triticum aestivum L. Em. Thell. and comparison with a map from a wide cross Theor Appl Genet 94 367 377
6. KJ Chalmers AW Campbell J Kretschmer A Karakousis PH Henschke S Pierens N Harker M Pallotta GB Cornish MR Shariflou LR Rampling A McLauchlan G Daggard PJ Sharp TA Holton MW Sutherland R Appels P Langridge 2001 Construction of three linkage maps in bread wheat, Triticum aestivum Aust J Agric Res 52 1089 1119
7. S Chao PJ Sharp AJ Worland EJ Warham RMD Koebner MD Gale 1989 RFLP-based genetic maps of wheat homoeologous group 7 chromosomes Theor Appl Genet 78 495 504
8. DE Delaney S Nasuda TR Endo BS Gill SH Hulbert 1995 Cytologically based physical maps of the group-2 chromosomes of wheat Theor Appl Genet 91 568 573
9. DE Delaney S Nasuda TR Endo BS Gill SH Hulbert 1995 Cytologically based physical maps of the group 3 chromosomes of wheat Theor Appl Genet 91 780 782
10. KM Devos MD Atkinson CN Chinoy C Liu MD Gale 1992 RFLP-based genetic map of the homoeologous group-3 chromosomes of wheat and rye Theor Appl Genet 83 931 939
11. JD Faris B Laddomada BS Gill 1998 Molecular mapping of segregation distortion loci in Aegilops tauschii Genetics 149 319 327
12. MG Francki O Crasta JM Anderson H Sharma HW Ohm 1997 Structural organization of an alien Thinopyron intermedium group 7 chromosome in U.S. soft red winter wheat (Triticum aestivum L.) Genome 40 716 722
13. TM Geiman KD Robertson 2002 Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together? J Cell Biochem 87 117 125
14. KS Gill BS Gill TR Endo EV Boyko 1996 identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat Genetics 143 1001 1012
15. KS Gill BS Gill TR Endo T Taylor 1996 Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat Genetics 144 1883 1891
16. A Graner A Jahoor J Schondelmaier H Siedler K Pollen G Fischbeck G Wenzl RG Herrmann 1991 Construction of an RFLP map of barley Theor Appl Genet 83 250 256
17. PK Gupta HS Balyan KJ Edwards P Isaac V Korzun M Roder MF Gautier P Joudrier AR Schlatter J Dubcovsky RC De la Pena M Khairallah G Penner MJ Hayden P Sharp B Keller RCC Wang JP Hardouin P Jack P Leroy 2002 Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat Theor Appl Genet 105 413 422
18. PK Gupta S Rustgi RR Mir 2008 Array-based high-throughput DNA markers for crop improvement Heredity 101 5 18
19. H Guyomarc'h P Sourdille G Charmet K Edwards M Bernard 2002 Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theor Appl Genet 104 1164 1172
20. M Hayden P Stephenson A Logojan D Khatkar C Rogers J Elsden R Koebner J Snape P Sharp 2006 Development and genetic mapping of sequence-tagged microsatellites (STMs) in bread wheat (Triticum aestivum L.) Theor Appl Genet 113 1271 1281
21. M Hayden T Nguyen A Waterman K Chalmers 2008 Multiplex-ready PCR: a new method for multiplexed SSR and SNP genotyping BMC Genomics 9 80
22. MJ Hayden TM Nguyen A Waterman GL McMichael KJ Chalmers 2008 Application of multiplex-ready PCR for fluorescence-based SSR genotyping in barley and wheat Mol Breed 21 271 281
23. PR Hearnden PJ Eckermann GL McMichael MJ Hayden JK Eglinton KJ Chalmers 2007 A genetic map of 1, 000 SSR and DArT markers in a wide barley cross Theor Appl Genet 115 383 391
24. U Hohmann TR Endo RG Herrmann BS Gill 1995 Characterization of deletions in common wheat induced by an Aegilops cylindrica chromosome: detection of multiple chromosome rearrangements Theor Appl Genet 91 611 617
25. U Hohmann A Graner TR Endo BS Gill RG Herrmann 1995 Comparison of wheat physical maps with barley linkage maps for group 7 chromosomes Theor Appl Genet 91 618 626
26. D Jaccoud K Peng D Feinstein A Kilian 2001 Diversity arrays: a solid state technology for sequence information independent genotyping Nucl Acids Res 29 e25
27. J Jia KM Devos S Chao TE Miller SM Reader MD Gale 1996 RFLP-based maps of the homoeologous group-6 chromosomes of wheat and their application in the tagging of Pm12, a powdery mildew resistance gene transferred from Aegilops speltoides to wheat Theor Appl Genet 92 559 565
28. RS Kota KS Gill BS Gill TR Endo 1993 A cytogenetically based physical map of chromosome 1B in common wheat Genome 36 548 554
29. S Kumar BS Gill JD Faris 2007 Identification and characterization of segregation distortion loci along chromosome 5B in tetraploid wheat Mol Genet Gen 278 187 196
30. S Landjeva V Korzun A Borner 2007 Molecular markers: actual and potential contributions to wheat genome characterization and breeding Euphytica 156 271 296
31. DA Laurie MD Bennett 1988 The production of haploid wheat plants from wheat × maize crosses Theor Appl Genet 76 393 397
32. YG Liu K Tsunewaki 1991 Restriction fragment length polymorphism (RFLP) analysis in wheat. II. Linkage maps of the RFLP sites in common wheat Jpn J Genet 66 617 633
33. ZH Liu JA Anderson J Hu TL Friesen JB Rasmussen JD Faris 2005 A wheat intervarietal genetic linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci Theor Appl Genet 111 782 794
34. E Mace L Xia D Jordan K Halloran D Parh E Huttner P Wenzl A Kilian 2008 DArT markers: diversity analyses and mapping in Sorghum bicolor BMC Genomics 9 26
35. KF Manly RH Cudmore JM Meer 2001 Map manager QTX, cross-platform software for genetic mapping Mamm Genome 12 930 932
36. OM Manninen 2000 Associations between anther-culture response and molecular markers on chromosomes 2H, 3H and 4H of barley (Hordeum vulgare L.) Theor Appl Genet 100 57 62
37. CL Marino JC Nelson YH Lu ME Sorrells P Leroy NA Tuleen CR Lopes GE Hart 1996 RFLP-based linkage maps of the homoeologous group 6 chromosomes of hexaploid wheat (Triticum aestivum L. em. Thell) Genome 39 359 366
38. MM Messmer M Keller S Zanetti B Keller 1999 Genetic linkage map of a wheat × spelt cross Theor Appl Genet 98 1163 1170
39. L Mickelson-Young TR Endo BS Gill 1995 A cytogenetic ladder-map of the wheat homoeologous group-4 chromosomes Theor Appl Genet 90 1007 1011
40. JC Nelson ME Sorrells AE Van-Deynze YH Lu M Atkinson M Bernard P Leroy JD Faris JA Anderson 1995 Molecular mapping of wheat: major genes and rearrangements in homoeologous groups 4, 5, and 7 Genetics 141 721 731
41. JC Nelson AE Van Deynze E Autrique ME Sorrells YH Lu S Negre M Bernard P Leroy 1995 Molecular mapping of wheat. Homoeologous group 2 Genome 38 516 524
42. JC Nelson AE Van Deynze E Autrique ME Sorrells YH Lu S Negre M Bernard P Leroy 1995 Molecular mapping of wheat. Homoeologous group 3 Genome 38 525 533
43. S Paillard T Schnurbusch M Winzeler M Messmer P Sourdille O Abderhalden B Keller G Schachermayr 2003 An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theor Appl Genet 107 1235 1242
44. J Peng AB Korol T Fahima MS Roder YI Ronin YC Li E Nevo 2000 Molecular genetic maps in wild emmer wheat, Triticum dicoccoides: genome-wide coverage, massive negative interference, and putative quasi-linkage Genome Res 10 1509 1531
45. E Pestsova V Korzun NP Goncharov K Hammer MW Ganal MS Roder 2000 Microsatellite analysis of Aegilops tauschii germplasm Theor Appl Genet 101 100 106
46. SH Rangwala EJ Richards 2004 The value-added genome: building and maintaining genomic cytosine methylation landscapes Curr Opin Genet Dev 14 686 691
47. MS Roder V Korzun BS Gill MW Ganal 1998 The physical mapping of microsatellite markers in wheat Genome 41 278 283
48. MS Roder V Korzun K Wendehake J Plaschke MH Tixier P Leroy MW Ganal 1998 A microsatellite map of wheat Genetics 149 2007 2023
49. K Semagn A Bjornstad H Skinnes AG Maroy Y Tarkegne M William 2006 Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population Genome 49 545 555
50. JD Sherman LE Talbert 2002 Vernalization-induced changes of the DNA methylation pattern in winter wheat Genome 45 253 260
51. DJ Somers P Isaac K Edwards 2004 A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) Theor Appl Genet 109 1105 1114
52. QJ Song EW Fickus PB Cregan 2002 Characterization of trinucleotide SSR motifs in wheat Theor Appl Genet 104 286 293
53. QJ Song JR Shi S Singh EW Fickus JM Costa J Lewis BS Gill R Ward PB Cregan 2005 Development and mapping of microsatellite (SSR) markers in wheat Theor Applied Genet 110 550 560
54. P Sourdille T Cadalen H Guyomarc'h J Snape M Perretant G Charmet C Boeuf S Bernard M Bernard 2003 An update of the Courtot × Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat Theor Appl Genet 106 530 538
55. P Sourdille S Singh T Cadalen G Brown-Guedira G Gay L Qi B Gill P Dufour A Murigneux M Bernard 2004 Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.) Funct Integr Genom 4 12 25
56. M Tariq J Paszkowski 2004 DNA and histone methylation in plants Trends Genet 20 244 251
57. J Uphaus E Walker M Shankar H Golzar R Loughman M Francki H Ohm 2007 Quantitative trait loci identified for resistance to Stagonospora glume blotch in wheat int eh USA and Australia Crop Sci 47 1813 1822
58. AE Van Deynze J Dubcovsky KS Gill JC Nelson ME Sorrells J Dvorak BS Gill ES Lagudah SR McCouch R Appels 1995 Molecular-genetic maps for chromosome 1 in Triticeae species and their relation to chromosomes in rice and oats Genome 38 47 59
59. H Van Os P Stam R Visser H Van Eck 2005 RECORD: a novel method for ordering loci on a genetic linkage map TAG Theor Appl Genet 112 30 40
60. RK Varshney PC Sharma PK Gupta HS Balyan B Ramesh JK Roy A Kumar A Sen 1998 Low level of polymorphism detected by SSR probes in bread wheat Plant Breed 117 182 184
61. RE Voorrips 2002 MapChart: Software for the graphical presentation of linkage maps and QTLs J Hered 93 77 78
62. Y Weng NA Tuleen GE Hart 2000 Extended physical maps and a consensus physical map of the homoeologous group-6 chromosomes of wheat (Triticum aestivum L-em Thell.) Theor Appl Genet 100 519 527
63. P Wenzl J Carling D Kudrna D Jaccoud E Huttner A Kleinhofs A Kilian 2004 Diversity arrays technology (DArT) for whole-genome profiling of barley Proc Nat Acad Sci USA 101 9915 9920
64. DX Xie KM Devos G Moore MD Gale 1993 RFLP-based genetic maps of the homoeologous group 5 chromosomes of bread wheat (Triticum aestivum L.) Theor Appl Genet 87 70 74
65. LZ Xiong CG Xu MAS Maroof QF Zhang 1999 Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique Mol Gen Genet 261 439 446
66. Y Xu L Zhu J Xiao N Huang SR McCouch 1997 Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.) Mol Gen Genet 253 535 545
67. MS Zhang HY Yan N Zhao XY Lin JS Pang KZ Xu LX Liu B Liu 2007 Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids Theor Appl Genet 115 195 207