Realistic simulations of combined DNA electrophoretic flow and EOF in nano-fluidic devices

Electrophoresis

Volumn 29, Issue 24, 2008, Pages 4880-4886

  Duong Hong, Duc ^a,b   Han, Jongyoon ^b,c,d   Wang, Jian Sheng ^b,e   Hadjiconstantinou, Nicolas G ^b,d   Chen, Yu Zong ^b,e   Liu, Gui Rong ^b,e  

^a ABBOTT VASCULAR   (United States)

^b SINGAPORE MIT ALLIANCE   (Singapore)

^c Department of Electrical Engineering and Computer Science   (United States)

^d Massachusetts Institute of Technology   (United States)

^e NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Debye layer; Dissipative particle dynamics method; DNA separation; Entropic trapping; Microfluidics

Indexed keywords

BIOINFORMATICS; DISSIPATIVE PARTICLE DYNAMICS; ELECTROPHORESIS; FLUIDIC DEVICES; MICROFLUIDICS; MOLECULAR DYNAMICS; STOCHASTIC MODELS; STOCHASTIC SYSTEMS;

COUNTERIONS; DEBYE LAYER; DISSIPATIVE PARTICLE DYNAMICS MODEL; DISSIPATIVE PARTICLES DYNAMICS METHOD; DNA SEPARATION; ENTROPIC TRAPPING; MOLECULAR-DYNAMICS CALCULATION; NANOFLUIDIC DEVICE; REALISTIC SIMULATION; STOCHASTIC MOTION;

DNA;

DNA;

ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; ELECTROPHORESIS; ENTROPY; HYDRODYNAMICS; MOLECULAR DYNAMICS; NANOFLUIDICS; SIMULATION; STOCHASTIC MODEL;

EID: 59349094768     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200800257     Document Type: Article

References (24)

1. Viovy, J. L., Rev. Mod. Phys. 2000, 72, 813-872.
2. Slater, G. W., Guilouzic, S., Gauthier, M. G., Mercier, J.-F. et al., Electrophoresis 2002, 23, 3791-3816.
3. Long, D., Viovy, J. L., Ajdari, A., Phys. Rev. Lett. 1996, 76, 3858-3861.
4. Han, J., Turner, H. G., Phys. Rev. Lett. 1999, 83, 1688-1691.
5. Han, J., Craighead, H. G., Science 2000, 288, 1026-1029.
6. Fu, P., Yoo, J., Han, J., Phys. Rev. Lett. 2006, 97, 018103: 1-4.
7. Tessier, F., Labrie, J., Slater, G. W., Macromolecules 2002, 35, 4791-4800.
8. Chen, Z., Escobedo, F. A., Mol. Sim. 2003, 29, 417-425.
9. Streek, M., Schmid, F., Duong, T. T., Ros, A., J. Biotechnol. 2004, 112, 79-89.
10. Panwar, A. S., Kumar, S., Macromolecules 2006, 39, 1279-1289.
11. Hoogerbrugge, P. J., Koelman, J. M. V. A., Europhys. Lett. 1392, 19(3), 155-160.
12. Fan, X-J., Phan-Thien, N., Chen, S., Wu, X., Ng, T., Phys. Fluids 2006, 18, 063102: 1-10.
13. Coveney, P. V., Español, P., J. Phys. A: Maths Gen. 1997, 30, 779-784.
14. Duong-Hong, D., Wang, J-S., Liu, G-R., Chen, Y. Z. et al., Microfluid. Nanofluid. 2008, 4, 219-225.
15. Español, P., Warren, P., Europhys. Lett. 1995, 30, 191-196.
16. Groot, R. D., Warren, P. B., J. Chem. Phys. 1997, 107, 4423-4435.
17. Duong-Hong, D., Phan-Thien, N., Fan, X.-J., Comput. Mech. 2004, 35, 24-29.
18. Symeonidis, V., Karniadakis, G. E., Caswell, B., Bull. Pol. Ac.: Tech. 2005, 53, 395-403.
19. Shaqfeh, E. S. G., J. Non-Newtonian Fluid Mech. 2005, 130, 1-28.
20. Marko, J. F., Siggia, E. D., Macromolecules 1995, 28, 8759-8770.
21. Nkodo, A. E., Garnier, J. M., Tinland, B., Ren, H. et al., Electrophoresis 2001, 22, 2424-2432.
22. Stellwagen, E., Lu, Y., Stellwagen, N. C., Biochemistry 2003, 42, 11745-11750.
23. Smith, S. B., Bendich, A. J., Biopolymers 1990, 29, 1167-1173.
24. Long, D., Viovy, J. L., Ajdari, A., Biopolymers 1996, 39, 755-759.