메뉴 건너뛰기




Volumn 497, Issue , 2009, Pages 33-49

Identification of SUMO-conjugated proteins and their SUMO attachment sites using proteomic mass spectrometry

Author keywords

Mass spectrometry; Post translational modifications; Proteomics; Smt3 SUMO

Indexed keywords

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 59249097527     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-59745-566-4_3     Document Type: Article
Times cited : (63)

References (24)
  • 1
    • 13444254137 scopus 로고    scopus 로고
    • Proteomic insights into ubiquitin and ubiquitin-like proteins
    • Denison, C., Kirkpatrick, D. S., and Gygi, S. P. (2005) Proteomic insights into ubiquitin and ubiquitin-like proteins. Curr. Opin. Chem. Biol. 9, 69-75.
    • (2005) Curr. Opin. Chem. Biol , vol.9 , pp. 69-75
    • Denison, C.1    Kirkpatrick, D.S.2    Gygi, S.P.3
  • 2
    • 14244260623 scopus 로고    scopus 로고
    • Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae
    • Hannich, J. T., Lewis, A., Kroetz, M. B., Li, S. J., Heide, H., Emili, A., and Hochstrasser, M. (2005) Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae. J. Biol. Chem. 280, 4102-4110.
    • (2005) J. Biol. Chem , vol.280 , pp. 4102-4110
    • Hannich, J.T.1    Lewis, A.2    Kroetz, M.B.3    Li, S.J.4    Heide, H.5    Emili, A.6    Hochstrasser, M.7
  • 3
    • 2942525287 scopus 로고    scopus 로고
    • Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc finger proteins, and nuclear pore complex proteins: A proteomic analysis
    • Li, T., Evdokimov, E., Shen, R. F., Chao, C. C., Tekle, E., Wang, T., Stadtman, E. R., Yang, D. C., and Chock, P. B. (2004) Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc finger proteins, and nuclear pore complex proteins: a proteomic analysis. Proc. Natl. Acad. Sci. USA 101, 8551-8556.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 8551-8556
    • Li, T.1    Evdokimov, E.2    Shen, R.F.3    Chao, C.C.4    Tekle, E.5    Wang, T.6    Stadtman, E.R.7    Yang, D.C.8    Chock, P.B.9
  • 5
    • 4744360999 scopus 로고    scopus 로고
    • A proteomewide approach identifies sumoylated substrate proteins in yeast
    • Panse, V. G., Hardeland, U., Werner, T., Kuster, B., and Hurt, E. (2004) A proteomewide approach identifies sumoylated substrate proteins in yeast. J. Biol. Chem. 279, 41346-41351.
    • (2004) J. Biol. Chem , vol.279 , pp. 41346-41351
    • Panse, V.G.1    Hardeland, U.2    Werner, T.3    Kuster, B.4    Hurt, E.5
  • 8
    • 8544273758 scopus 로고    scopus 로고
    • Global analysis of protein sumoylation in Saccharomyces cerevisiae
    • Wohlschlegel, J. A., Johnson, E. S., Reed, S. I., and Yates, J. R., 3rd (2004) Global analysis of protein sumoylation in Saccharomyces cerevisiae. J. Biol. Chem. 279, 45662-456628.
    • (2004) J. Biol. Chem , vol.279 , pp. 45662-456628
    • Wohlschlegel, J.A.1    Johnson, E.S.2    Reed, S.I.3    Yates 3rd, J.R.4
  • 9
    • 2442703973 scopus 로고    scopus 로고
    • Broad spectrum identification of cellular small ubiquitin-related modifier (SUMO) substrate proteins
    • Zhao, Y., Kwon, S. W., Anselmo, A., Kaur, K., and White, M. A. (2004) Broad spectrum identification of cellular small ubiquitin-related modifier (SUMO) substrate proteins. J. Biol. Chem. 279, 20999-21002.
    • (2004) J. Biol. Chem , vol.279 , pp. 20999-21002
    • Zhao, Y.1    Kwon, S.W.2    Anselmo, A.3    Kaur, K.4    White, M.A.5
  • 10
    • 3543018486 scopus 로고    scopus 로고
    • Global analyses of sumoylated proteins in Saccharomyces cerevisiae. Induction of protein sumoylation by cellular stresses
    • Zhou, W., Ryan, J. J., and Zhou, H. (2004) Global analyses of sumoylated proteins in Saccharomyces cerevisiae. Induction of protein sumoylation by cellular stresses. J. Biol. Chem. 279, 32262-32268.
    • (2004) J. Biol. Chem , vol.279 , pp. 32262-32268
    • Zhou, W.1    Ryan, J.J.2    Zhou, H.3
  • 11
    • 33746500659 scopus 로고    scopus 로고
    • Proteomic analysis by multidimensional protein identification technology
    • Florens, L., and Washburn, M. P. (2006) Proteomic analysis by multidimensional protein identification technology. Methods Mol. Biol. 328, 159-175.
    • (2006) Methods Mol. Biol , vol.328 , pp. 159-175
    • Florens, L.1    Washburn, M.P.2
  • 12
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M. P., Wolters, D., and Yates, J. R., 3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247.
    • (2001) Nat. Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates 3rd, J.R.3
  • 15
    • 33645783699 scopus 로고    scopus 로고
    • Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies
    • Wohlschlegel, J. A., Johnson, E. S., Reed, S. I., and Yates, J. R., 3rd (2006) Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies. J. Proteome Res. 5, 761-770.
    • (2006) J. Proteome Res , vol.5 , pp. 761-770
    • Wohlschlegel, J.A.1    Johnson, E.S.2    Reed, S.I.3    Yates 3rd, J.R.4
  • 16
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., and Gygi, S. P. (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2, 43-50.
    • (2003) J. Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 17
    • 1842499791 scopus 로고    scopus 로고
    • Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry
    • Schirle, M., Heurtier, M. A., and Kuster, B. (2003) Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics 2, 1297-1305.
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1297-1305
    • Schirle, M.1    Heurtier, M.A.2    Kuster, B.3
  • 18
    • 33645703441 scopus 로고    scopus 로고
    • A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking
    • Tagwerker, C., Flick, K., Cui, M., Guerrero, C., Dou, Y., Auer, B., Baldi, P., Huang, L., and Kaiser, P. (2006) A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking. Mol. Cell. Proteomics 5, 737-748.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 737-748
    • Tagwerker, C.1    Flick, K.2    Cui, M.3    Guerrero, C.4    Dou, Y.5    Auer, B.6    Baldi, P.7    Huang, L.8    Kaiser, P.9
  • 19
    • 33746644150 scopus 로고    scopus 로고
    • HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae
    • Tagwerker, C., Zhang, H., Wang, X., Larsen, L. S., Lathrop, R. H., Hatfield, G. W., Auer, B., Huang, L., and Kaiser, P. (2006) HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae. Yeast 23, 623-632.
    • (2006) Yeast , vol.23 , pp. 623-632
    • Tagwerker, C.1    Zhang, H.2    Wang, X.3    Larsen, L.S.4    Lathrop, R.H.5    Hatfield, G.W.6    Auer, B.7    Huang, L.8    Kaiser, P.9
  • 20
    • 28844480841 scopus 로고    scopus 로고
    • Identification of ubiquitination sites and determination of ubiquitin-chain architectures by mass spectrometry
    • Kaiser, P., and Wohlschlegel, J. (2005) Identification of ubiquitination sites and determination of ubiquitin-chain architectures by mass spectrometry. Methods Enzymol. 399, 266-277.
    • (2005) Methods Enzymol , vol.399 , pp. 266-277
    • Kaiser, P.1    Wohlschlegel, J.2
  • 21
    • 33750699996 scopus 로고    scopus 로고
    • Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
    • Florens, L., Carozza, M. J., Swanson, S. K., Fournier, M., Coleman, M. K., Workman, J. L., and Washburn, M. P. (2006) Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40, 303-311.
    • (2006) Methods , vol.40 , pp. 303-311
    • Florens, L.1    Carozza, M.J.2    Swanson, S.K.3    Fournier, M.4    Coleman, M.K.5    Workman, J.L.6    Washburn, M.P.7
  • 22
    • 0033580444 scopus 로고    scopus 로고
    • A new protease required for cell-cycle progression in yeast
    • Li, S. J., and Hochstrasser, M. (1999) A new protease required for cell-cycle progression in yeast. Nature 398, 246-251.
    • (1999) Nature , vol.398 , pp. 246-251
    • Li, S.J.1    Hochstrasser, M.2
  • 23
    • 27644434674 scopus 로고    scopus 로고
    • A method of mapping protein sumoylation sites by mass spectrometry using a modified small ubiquitin-like modifier 1 (SUMO-1) and a computational program
    • Knuesel, M., Cheung, H. T., Hamady, M., Barthel, K. K., and Liu, X. (2005) A method of mapping protein sumoylation sites by mass spectrometry using a modified small ubiquitin-like modifier 1 (SUMO-1) and a computational program. Mol. Cell. P roteomics 4, 1626-1636.
    • (2005) Mol. Cell. P roteomics , vol.4 , pp. 1626-1636
    • Knuesel, M.1    Cheung, H.T.2    Hamady, M.3    Barthel, K.K.4    Liu, X.5
  • 24
    • 33745360876 scopus 로고    scopus 로고
    • Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software
    • Pedrioli, P. G., Raught, B., Zhang, X. D., Rogers, R., Aitchison, J., Matunis, M., and Aebersold, R. (2006) Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software. Nat. Methods 3, 533-539.
    • (2006) Nat. Methods , vol.3 , pp. 533-539
    • Pedrioli, P.G.1    Raught, B.2    Zhang, X.D.3    Rogers, R.4    Aitchison, J.5    Matunis, M.6    Aebersold, R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.