Identification of proteins from membrane preparations by a combination of MALDI TOF-TOF and LC-coupled linear ion trap MS analysis of an Antarctic bacterium Pseudomonas syringae Lz4W, a strain with unsequenced genome

Electrophoresis

Volumn 29, Issue 21, 2008, Pages 4341-4350

  Jagannadham, Medicharla V ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Antarctic bacteria; Membrane proteins; MS; Pseudomonas sp; Psychrophiles

Indexed keywords

BACTERIA; ELECTROPHORESIS; GENES; MEMBRANES; TEMPERATURE;

ANTARCTIC BACTERIA; IDENTIFICATION OF PROTEINS; LINEAR ION TRAP; MALDI-TOF-TOF; MEMBRANE PREPARATION; MEMBRANE PROTEINS; MS; PSEUDOMONAS SP; PSEUDOMONAS SYRINGAE; PSYCHROPHILE;

PEPTIDES;

MEMBRANE PROTEIN;

ANTARCTICA; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; GENE SEQUENCE; ION TRAP MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; LOW TEMPERATURE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PSEUDOMONAS SYRINGAE; TEMPERATURE ACCLIMATIZATION; UNINDEXED SEQUENCE;

EID: 59249084983     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200700750     Document Type: Article

References (40)

1. Wallin, E., von Heijne, G., Protein Sci. 1998, 7, 1029-1038.
2. Fischer, F., Wolters, D., Rogner, M., Poetsch A., Mol. Cell Proteomics 2006, 5, 444-453.
3. Washburn, M. P., Wolters, D., Yates III J. R., Nat. Biotechnol. 2001, 19, 242-247.
4. Hunt, D. F., Yates III J. R., Shabanowitz, J., Winston, S. et al., Proc. Natl. Acad. Sci. USA 1986, 83, 6233-6237.
5. Wolters, D. A., Washburn, M. P., Yates III J. R., Anal. Chem. 2001, 73, 5683-5690.
6. Link, A. J., Hays, L. G., Carmack, E. B., Yates III J. R., Electrophoresis. 1997, 18, 1314-1334.
7. Wu, C. C., MacCoss, M. J., Howell, K. E., Yates III J. R., Nat. Biotechnol. 2003, 21, 532-538.
8. Klein, C., Garcia-Rizo, C., Bisle, B., Scheffer, B. et al., Proteomics. 2005, 5, 180-197.
9. Jagannadham, M. V., Nagaraj, R., J. Pept. Res. 2005, 66, 94-100.
10. Kamalakkannan, S., Murugan, V., Jagannadham, M. V., Nagaraj, R., Sankaran, K., Protein Eng. Des. Sel. 2004, 17, 721-729.
11. Barnidge, D. R., Dratz, E. A., Sunner, J., Jesaitis, A. J., Protein Sci. 1997, 6, 816-824.
12. Vestling, M. M., Fenselau, C., Anal. Chem. 1994, 66, 471-477.
13. Rosinke, B., Strupat, K., Hillenkamp, F., Rosenbusch, J. et al., J. Mass. Spectrom. 1995, 30, 1462-1468.
14. Cohen, S. L., Chait, B. T., Anal. Biochem. 1997, 247, 257-267.
15. Cech, N. B., Enke, C. G., Mass. Spectrom. Rev. 2001, 20, 362-387.
16. Ray, M. K., Kumar, G. S., Janiyani, K., Kannan, K. et al., J. Biosci. 1998, 23, 423-435.
17. Ray, M. K., in: Sreedhar, A. S., Srinivas, U. K. (Eds.). Cold-Stress Response of Low Temperature Adapted Bacteria, Research Signpost, Trivandrum, India, 2006, pp. 1-23.
18. Chattopadhyay, M. K., J. Biosci. 2006, 31, 157-165.
19. Feller, G., Gerday, C., Nature 2003, 1, 200-208.
20. Russell, N. J., Extremophiles 2000, 4, 83-90.
21. Jagannadham, M. V., Rao, V. J., Shivaji, S., J. Bacteriol. 1991, 173, 7911-7917.
22. Russell, N. J., Comp. Biochem. Physiol. Physiol. 1997, 118, 489-493.
23. Chattopadhyay, M. K., Jagannadham, M. V., Polar Biol. 2001, 24, 386-388.
24. Kumar, G. S., Jagannadham, M. V., Ray, M. K., J. Bacteriol. 2002, 184, 6746-6749.
25. Jagannadham, M. V., Chattopadhyay, M. K., Subbalakshmi, C. S., Narayanan, K. et al., Arch. Microbiol. 2000, 173, 418-424.
26. Ray, M. K., Kumar, G. S., Shivaji, S., Microbiology 1994, 140, 3217-3223.
27. Jagatap, P., Ray, M. K., FEMS Microbiol. Lett. 1999, 173, 379-388.
28. Shivaji, S., Shyamala Rao, L., Saisree, L., Sheth, V. et al., Appl. Environ. Microbiol. 1989, 55, 767-770.
29. Laemmli, U. K., Nature 1970, 227, 680-685.
30. Gharahdaghi, F., Weinberg, C. R., Meagher, D. A., Imai, B. S., Mische, S. M., Electrophoresis, 1999, 20, 601-605.
31. Eng, J. K., McCormack, A. L., Yates III J. R., J. Am. Soc. Mass. Spectrom. 1994, 5, 976-989.
32. Yates III J. R., Eng, J. K., McCormack, A. L., Schieltz, D., Anal. Chem. 1995, 67, 1426-1436.
33. Tabb, D. L., McDonald, W. H., Yates III J. R., J. Proteom. Res. 2002, 1, 21-26.
34. Kyte, J., Doolittle, R. F., J. Mol. Biol. 1982, 157, 105-132.
35. Gardy, J. L., Liard, M. R., Chen, F., Rey, S. et al., Bioinformatics 2005, 21, 617-623.
36. Zhang, N., Chen, R., Young, N., Wishart, D. et al. Proteomics 2007, 7, 484-493.
37. Chen, E. I., Cociorva, D., Norris, J. L., Yates III J. R., J. Proteome. Res. 2007, 6, 2529-2538.
38. Strocchi, M., Ferrer, M., Timmis, K. N., Golyshin, P. N., Proteomics 2006, 6, 193-206.
39. Purusharth, R. I., Klein, F., Sultana, S., Jager, S. et al., J. Biol. Chem. 2005, 280, 14572-14578.
40. Liou, G. G., Jane, W. N., Cohen, S. N., Lin, N. S., LinChao, S., Proc. Natl. Acad. Sci. USA 2001, 98, 63-68.