Diversity and genetic structure of teak (Tectona grandis L.f) in its natural range using DNA microsatellite markers

New Forests

Volumn 37, Issue 2, 2009, Pages 175-195

  Fofana, Inza Jesus ^a   Ofori, Daniel ^b   Poitel, Mireille ^c   Verhaegen, Daniel ^c  

^a UNIVERSITÉ FÉLIX HOUPHOUËT BOIGNY   (Côte d’Ivoire)

^b FORESTRY RESEARCH INSTITUTE OF GHANA   (Ghana)

^c CIRAD   (France)

Author keywords

Conservation; Genetic diversity; Genetic structure; SSR; Tectona grandis

Indexed keywords

LINGUISTICS; NUCLEIC ACIDS; ORGANIC ACIDS;

CONSERVATION; GENETIC DIVERSITY; GENETIC STRUCTURE; SSR; TECTONA GRANDIS;

SEMICONDUCTOR RELAYS;

DECIDUOUS TREE; DNA; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; SPECIES CONSERVATION; SPECIES DIVERSITY;

ASIA; EURASIA; INDIA; LAOS; SOUTH ASIA; SOUTHEAST ASIA; THAILAND;

TECTONA GRANDIS;

EID: 59149093804     PISSN: 01694286     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11056-008-9116-5     Document Type: Article

References (81)

1. PR Aldrich JL Hamrick P Chavarriaga 1998 Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera Mol Ecol 7 933 944 10.1046/j.1365-294x.1998.00396.x
2. SK Bagchi 1995 Selection differential and predicted genetic gain in Tectona grandis Indian For 121 482 490
3. SK Bagchi VP Sharma PK Gupta 1989 Developmental instability in leaves of Tectona grandis Silvae Genet 38 1 6
4. PE Bedell 1989 Preliminary observations on variability of teak in India Indian For 115 72 81
5. Belkhir K, Borsa P, Chikhi L et al (1996-2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier (France). Available at http://www.genetix.univ- montp2.fr/genetix/genetix.htm
6. VW Bendale RY Naik JL Mehta 2005 Variability studies in teak J Ecobiol 17 29 34
7. KM Bhat PB Priya 2004 Influence of provenance variation on wood properties of teak from the Western Ghat Region in India Int Assoc Wood Anat J 25 273 282
8. DF Callen AD Thompson Y Shen 1993 Incidence and origin of "null" alleles in the (AC)n microsatellite markers Am J Hum Genet 52 922 927
9. LL Cavalli-Sforza AWF Edwards 1967 Phylogenetic analysis: models and estimation procedures Evolution 32 550 570 10.2307/2406616
10. Dah SE (2003) Sustainable management of teak forests in Myanmar. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 135-142
11. SE Dah 2004 Teak and forest management in Myanmar ITTO Trop For Update 14 12 13
12. D Dieringer C Schlötterer 2003 Microsatellite Analyser (MSA): a platform independent analysis tool for large microsatellite data sets Mol Ecol Notes 3 167 169 10.1046/j.1471-8286.2003.00351.x
13. B Dupuy D Verhaegen 1993 Plantation-grown teak (Tectona grandis) in Côte d'Ivoire Bois For Trop 235 9 24
14. C Dutech HI Joly P Jarne 2004 Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana Heredity 92 69 77 10.1038/sj.hdy.6800384
15. A El Mousadik RJ Petit 1996 High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco Theor Appl Genet 92 832 839 10.1007/BF00221895
16. PR England AV Usher RJ Whelan 2002 Microsatellite diversity and genetic structure of fragmented populations of the rare, fire-dependent shrub Grevillea macleayana Mol Ecol 11 967 977 10.1046/j.1365-294X.2002.01500.x
17. G Evanno S Regnaut J Goudet 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study Mol Ecol 14 2611 2620 10.1111/j.1365-294X.2005.02553.x
18. Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington, Seattle. Available at http://evolution.genetics.washington.edu/phylip.html
19. G Gangopadhyay SB Gangopadhyay R Poddar 2003 Micropropagation of Tectona grandis: assessment of genetic fidelity Biol Plant 46 459 461 10.1023/A:1024359126802
20. BS Gill YS Bedi SS Bir 1983 Cytopalynological studies in woody members of family Verbenaceae from north-west and central India J Indian Bot Soc 62 235 244
21. DB Goldstein DD Pollock 1997 Launching microsatellites: a review of mutation processes and methods of phylogenetic inference J Hered 88 335 342
22. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices. Version 2.9.3. Available from http://www.unil.ch/izea/ softwares/fstat.html
23. Graudal L, Kjaer ED, Suangtho V et al (1999) Conservation of genetic resources of Teak (Tectona grandis) in Thailand. Danida Forest Seed Centre, Technical note No 52:1-39
24. RP Gunaga R Vasudeva 2002 Genetic variation for fruiting phenology among teak clones of different provenances of Karnataka Indian J For 25 215 220
25. Gunaga RP, Vasudeva R (2003) Causes for low fruit production in clonal seed orchards of Teak (Tectona grandis L.f): a special reference to India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 352-358
26. BN Gupta PG Pattanath 1975 Factors affecting germination behaviour of teak seeds of eighteen Indian origins Indian For 101 584 588
27. Gyi KK, Tint K (1995) Management status of natural teak forests. In: Proceedings of the second regional seminar on teak. Teak for the future. Yangon, Myanmar, 29 May-3 June, pp 27-48
28. SH Hurlbert 1971 The nonconcept of species diversity: a critique and alternative parameters Ecology 52 577 586 10.2307/1934145
29. Indira EP (2003) Why teak seed orchards are low productive? In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 347-351
30. Isoda K, Watanabe A, Widyatmoko A et al (2000) The simple and reliable management of teak (Tectona grandis) clones with SCAR (Sequence Characterized Amplified Region) marker. In: Proceedings of third regional seminar on teak. Potentials and opportunities in marketing and trade of plantation teak: challenge for the new millennium. Yogyakarta, Indonesia, July 31-August 4, pp 265-269
31. Kaosa-ard A (1986) Teak, Tectona grandis, Linn. f. nursery techniques with special reference to Thailand. In: Centre DFS (ed) Seed Leaflet No 4, Humlebaek Denmark, pp 1-42
32. Kaosa-ard A (1999) Gains from provenance selection. In: Proceedings of international seminar on site, technology and productivity of teak plantations. Chiang Mai, Thailand, 26-29 January, pp 191-207
33. Kaosa-ard A, Suangtho V, Kjaer ED (1998) Experience from tree improvement of teak (Tectona grandis) in Thailand. In: Centre DFS (ed) Technical Note No 5, Humlebaek Denmark, pp 1-14
34. Katwal RPS (2003) Teak in India: status, prospects and perspectives. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 1-22
35. Keiding H, Wellendorf H, Lauridsen EB (1986) Evaluation of an international series of teak provenance trials. Danida Forest Seed Centre, pp 1-81
36. BA Kelly OJ Hardy J-M Bouvet 2004 Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali Mol Ecol 13 1231 1240 10.1111/j.1365-294X.2004.02144.x
37. AWS Kertadikara D Prat 1995 Genetic structure and mating system in teak (Tectona grandis L.f.) provenances Silvae Genet 44 104 110
38. AWS Kertadikara D Prat 1995 Isozyme variation among teak (Tectona grandis L.f.) provenances Theor Appl Genet 90 803 810 10.1007/BF00222015
39. Kijkar S (2003) Current status of teak in Thailand. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 68-72
40. Kjaer ED, Lauridsen EB (1996) Results from a second evaluation of DFSC coordinated teak (Tectona grandis) provenance trials: has new information been obtained? In: Proceedings of the conference: tree improvement for sustainable tropical forestry. Caloundra, Queensland, Australia, 27 October-1 November, pp 154-157
41. ED Kjaer HR Siegismund 1996 Allozyme diversity in two Tanzanian and two Nicaraguan landraces of teak (Tectona grandis L.) For Genet 3 45 52
42. ED Kjaer HR Siegismund V Suangtho 1996 A multivariate study on genetic variation in teak (Tectona grandis (L.)) Silvae Genet 45 361 368
43. ED Kjaer S Kajornsrichon EB Lauridsen 1999 Heartwood, calcium and silica content in five provenances of teak (Tectona grandis L.) Silvae Genet 48 1 3
44. Kjaer E, Amaral W, Yanchuk A et al (2004) Strategies for conservation of forest genetic resources. In: FAO, FLD, IPGRI (eds) Forest genetic resources conservation and management-Overview, concepts and some systematic approaches vol 1, pp 5-24
45. Kumar P (2003) Teak in Karnataka state, India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 45-46
46. NN Kyaw 2004 The phenotypic characteristics of natural-grown teak in Myanmar Teaknet Newsl 33 3 5
47. Lowe A, Davies S, Volkaert H et al (2003) Teakdiv-Developing know-how for the improvement and sustainable management of teak genetic resources. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 361-365
48. J Mathew R Vasudeva 2003 Clonal variation for seed germination in teak (Tectona grandis Linn. f.) Curr Sci 84 1133 1136
49. Nagarajan B, Varghese M, Nicodemus A et al (1996) Reproductive biology of teak and its implication in tree improvement. In: Proceedings of the conference: tree improvement for sustainable tropical forestry. Caloundra, Queensland, Australia, 27 October-1 November, pp 244-248
50. M Nei 1978 Estimation of average heterozygosity and genetic distance from a small number of individuals Genetics 89 583 590
51. AC Newton TR Allnutt ACM Gillies 1999 Molecular phylogeography, intraspecific variation and the conservation of tree species Trends Ecol Evol 14 140 145 10.1016/S0169-5347(98)01555-9
52. Nicodemus A, Nagarajan B, Narayanan C et al (2003) RAPD variation in Indian teak populations and its implications for breeding and conservation. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 321-330
53. ER Palupi JN Owens 1998 Reproductive phenology and reproductive success of teak (Tectona grandis L. F.) Int J Plant Sci 159 833 842 10.1086/297604
54. D Pandey C Brown 2000 Le teck dans le monde Unasylva 201 3 13
55. Parthiban KT, Surendran C, Paramathma M et al (2003) Molecular characterization of teak seed sources using RAPD's. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 331-337
56. Perrier X, Jacquemoud-Collet JP (2006) DARwin software. Available at http://darwin.cirad.fr/darwin
57. Prabhu N (2003) Teak in Kerala state, India: past, present and future. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 54-62
58. JK Pritchard M Stephens P Donnelly 2000 Inference of population structure using multilocus genotype data Genetics 155 945 959
59. PB Priya KM Bhat 1998 False ring formation in teak (Tectona grandis L.f.) and the influence of environmental factors For Ecol Manag 108 215 222
60. PB Priya KM Bhat 1999 Influence of rainfall, irrigation and age on the growth periodicity and wood structure in teak (Tectona grandis) Int Assoc Wood Anatomists 20 181 192
61. Rao DS, Singh M, Shivaraju B (1991) Teak management in Kerala. In: Proceedings of the international teak symposium. Thiruvananthapuram, Kerala, India, 2-4 December, pp 32-37
62. Rao PS (2003) Status of teak in Andhra Pradesh India. In: Proceedings of the international conference on quality timber products of teak from sustainable forest management. Peechi, India, 2-5 December, pp 31-44
63. MS Rawat DP Uniyal SL Sharma 1998 Identification of provenances based on leaf morphology in Tectona grandis Indian For 124 248 251
64. WR Rice 1989 Analysing tables of statistical tests Evolution 43 223 225 10.2307/2409177
65. M Rossetto RW Slade PR Baverstock 1999 Microsatellite variation and assessment of genetic structure in tea tree (Melaleuca alternifolia-Myrtaceae) Mol Ecol 8 633 643 10.1046/j.1365-294x.1999.00622.x
66. F Rousset 2008 GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux Mol Ecol Resour 8 103 106 10.1111/j.1471-8286. 2007.01931.x
67. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
68. MK Shrestha H Volkaert D Van der Straeten 2005 Assessment of genetic diversity in Tectona grandis using amplified fragment length polymorphism markers Can J Res 35 1017 1022 10.1139/x05-033
69. Simatupang MH (2000) Chemical properties of teakwood (Tectona grandis L.f.) as guide for selection of mother trees. In: Proceedings of third regional seminar on teak. Potentials and opportunities in marketing and trade of plantation teak: challenge for the new millennium. Yogyakarta, Indonesia, July 31-August 4, pp 255-264
70. V Sivakumar KT Parthiban BG Singh 2002 Variability in drupe characters and their relationship on seed germination in teak (Tectona grandis L.f.) Silvae Genet 51 232 237
71. DL Steffens SL Sutter SC Roemer 1993 An alternate universal forward primer for improved automated DNA sequencing of M13 Biotechniques 15 580 582
72. Suangtho V, Graudal L, Kjaer ED (1999) Genecological zonation as a tool in conservation of genetic resources of Teak (Tectona grandis) in Thailand. In: Proceedings of the international teak conference: Teak beyond 2000. Chiang Mai, Thailand, 23-25 August, pp 1-8
73. S Tangmitcharoen JN Owens 1997 Floral biology, pollination, pistil receptivity, and pollen tube growth of teak (Tectona grandis Linn f.) Ann Bot (Lond) 79 227 241 10.1006/anbo.1996.0317
74. S Tangmitcharoen JN Owens 1997 Pollen viability and pollen-tube growth following controlled pollination and their relation to low fruit production in teak (Tectona grandis Linn. f.) Ann Bot (Lond) 80 401 410 10.1006/anbo.1996.0440
75. Tewari DN (1992) A monograph on teak (Tectona grandis Linn. f.). International Book Distributors, Dehra Dun, India
76. M Varghese A Nicodemus PK Ramteke 2000 Variation in growth and wood traits among nine populations of teak in Peninsular India Silvae Genet 49 201 205
77. R Vasudeva M Hanumantha RP Gunaga 2004 Genetic variation for floral traits among teak (Tectona grandis Linn. f.) clones: implications to seed orchard fertility Curr Sci 87 358 362
78. D Verhaegen D Ofori I Fofana 2005 Development and characterization of microsatellite markers in Tectona grandis (Linn. f) Mol Ecol Notes 5 945 947 10.1111/j.1471-8286.2005.01124.x
79. BS Weir CC Cockerham 1984 Estimating F-statistics for the analysis of population structure Evolution 38 1358 1370 10.2307/2408641
80. S Wright 1951 The genetical structure of populations Ann Eugen 15 323 354
81. A Wünsch JI Hormazaa 2002 Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach [Prunus persica (L.) Batsch] SSR sequences Heredity 89 56 63 10.1038/sj.hdy.6800101