메뉴 건너뛰기




Volumn 386, Issue 2, 2009, Pages 379-390

Crystal Structure of Rhizavidin: Insights into the Enigmatic High-Affinity Interaction of an Innate Biotin-Binding Protein Dimer

Author keywords

avidin; biotin; crystal structure; high affinity systems; rhizavidin

Indexed keywords

AVIDIN; BIOTIN; DIMER; MONOMER; RHIZAVIDIN; TRYPTOPHAN; UNCLASSIFIED DRUG;

EID: 59149092570     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2008.11.061     Document Type: Article
Times cited : (41)

References (47)
  • 2
    • 0025288944 scopus 로고
    • Avidin and streptavidin
    • Green N.M. Avidin and streptavidin. Methods Enzymol. 184 (1990) 51-67
    • (1990) Methods Enzymol. , vol.184 , pp. 51-67
    • Green, N.M.1
  • 3
    • 0025281379 scopus 로고
    • Introduction to avidin-biotin technology
    • Wilchek M., and Bayer E.A. Introduction to avidin-biotin technology. Methods Enzymol. 184 (1990) 5-13
    • (1990) Methods Enzymol. , vol.184 , pp. 5-13
    • Wilchek, M.1    Bayer, E.A.2
  • 4
    • 0025345820 scopus 로고
    • Application of avidin-biotin technology to affinity-based separations
    • Bayer E.A., and Wilchek M. Application of avidin-biotin technology to affinity-based separations. J. Chromatogr. 510 (1990) 3-11
    • (1990) J. Chromatogr. , vol.510 , pp. 3-11
    • Bayer, E.A.1    Wilchek, M.2
  • 5
    • 0034959170 scopus 로고    scopus 로고
    • Pre-targeted locoregional radioimmunotherapy with 90Y-biotin in glioma patients: phase I study and preliminary therapeutic results
    • Paganelli G., Bartolomei M., Ferrari M., Cremonesi M., Broggi G., Maira G., et al. Pre-targeted locoregional radioimmunotherapy with 90Y-biotin in glioma patients: phase I study and preliminary therapeutic results. Cancer Biother. Radiopharm. 16 (2001) 227-235
    • (2001) Cancer Biother. Radiopharm. , vol.16 , pp. 227-235
    • Paganelli, G.1    Bartolomei, M.2    Ferrari, M.3    Cremonesi, M.4    Broggi, G.5    Maira, G.6
  • 6
    • 33845365954 scopus 로고    scopus 로고
    • Evaluation of a new biotin-DOTA conjugate for pretargeted antibody-guided radioimmunotherapy (PAGRIT((R)))
    • Epub 2006 Jun 6
    • Urbano N., Papi S., Ginanneschi M., De Santis R., Pace S., Lindstedt R., et al. Evaluation of a new biotin-DOTA conjugate for pretargeted antibody-guided radioimmunotherapy (PAGRIT((R))). Eur. J. Nucl. Med. Mol. Imaging 34 (2007) 68-77 Epub 2006 Jun 6
    • (2007) Eur. J. Nucl. Med. Mol. Imaging , vol.34 , pp. 68-77
    • Urbano, N.1    Papi, S.2    Ginanneschi, M.3    De Santis, R.4    Pace, S.5    Lindstedt, R.6
  • 7
    • 34547182937 scopus 로고    scopus 로고
    • Electric-field-directed assembly of biomolecular-derivatized nanoparticles into higher-order structures
    • Dehlinger D.A., Sullivan B.D., Esener S., and Heller M.J. Electric-field-directed assembly of biomolecular-derivatized nanoparticles into higher-order structures. Small 3 (2007) 1237-1244
    • (2007) Small , vol.3 , pp. 1237-1244
    • Dehlinger, D.A.1    Sullivan, B.D.2    Esener, S.3    Heller, M.J.4
  • 11
    • 0029156481 scopus 로고
    • Cloning and sequencing of the chicken egg-white avidin-encoding gene and its relationship with the avidin-related genes Avr1-Avr5
    • Wallen M.J., Laukkanen M.O., and Kulomaa M.S. Cloning and sequencing of the chicken egg-white avidin-encoding gene and its relationship with the avidin-related genes Avr1-Avr5. Gene 161 (1995) 205-209
    • (1995) Gene , vol.161 , pp. 205-209
    • Wallen, M.J.1    Laukkanen, M.O.2    Kulomaa, M.S.3
  • 12
    • 10744220631 scopus 로고    scopus 로고
    • Chicken avidin-related protein 4/5 shows superior thermal stability when compared with avidin while retaining high affinity to biotin
    • Epub 2003 Dec 3
    • Hytonen V.P., Nyholm T.K., Pentikainen O.T., Vaarno J., Porkka E.J., Nordlund H.R., et al. Chicken avidin-related protein 4/5 shows superior thermal stability when compared with avidin while retaining high affinity to biotin. J. Biol. Chem. 279 (2004) 9337-9343 Epub 2003 Dec 3
    • (2004) J. Biol. Chem. , vol.279 , pp. 9337-9343
    • Hytonen, V.P.1    Nyholm, T.K.2    Pentikainen, O.T.3    Vaarno, J.4    Porkka, E.J.5    Nordlund, H.R.6
  • 13
    • 0036566145 scopus 로고    scopus 로고
    • Chicken avidin-related proteins show altered biotin-binding and physico-chemical properties as compared with avidin
    • Laitinen O.H., Hytonen V.P., Ahlroth M.K., Pentikainen O.T., Gallagher C., Nordlund H.R., et al. Chicken avidin-related proteins show altered biotin-binding and physico-chemical properties as compared with avidin. Biochem. J. 363 (2002) 609-617
    • (2002) Biochem. J. , vol.363 , pp. 609-617
    • Laitinen, O.H.1    Hytonen, V.P.2    Ahlroth, M.K.3    Pentikainen, O.T.4    Gallagher, C.5    Nordlund, H.R.6
  • 17
    • 0027164314 scopus 로고
    • Three-dimensional structures of avidin and the avidin-biotin complex
    • Livnah O., Bayer E.A., Wilchek M., and Sussman J.L. Three-dimensional structures of avidin and the avidin-biotin complex. Proc. Natl Acad. Sci. USA 90 (1993) 5076-5080
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 5076-5080
    • Livnah, O.1    Bayer, E.A.2    Wilchek, M.3    Sussman, J.L.4
  • 18
    • 0024653594 scopus 로고
    • Crystal structure of core streptavidin determined from multiwavelength anomalous diffraction of synchrotron radiation
    • Hendrickson W.A., Pahler A., Smith J.L., Satow Y., Merritt E.A., and Phizackerley R.P. Crystal structure of core streptavidin determined from multiwavelength anomalous diffraction of synchrotron radiation. Proc. Natl Acad. Sci. USA 86 (1989) 2190-2194
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 2190-2194
    • Hendrickson, W.A.1    Pahler, A.2    Smith, J.L.3    Satow, Y.4    Merritt, E.A.5    Phizackerley, R.P.6
  • 19
    • 0024588901 scopus 로고
    • Structural origins of high-affinity biotin binding to streptavidin
    • Weber P.C., Ohlendorf D.H., Wendoloski J.J., and Salemme F.R. Structural origins of high-affinity biotin binding to streptavidin. Science 243 (1989) 85-88
    • (1989) Science , vol.243 , pp. 85-88
    • Weber, P.C.1    Ohlendorf, D.H.2    Wendoloski, J.J.3    Salemme, F.R.4
  • 20
    • 0032704893 scopus 로고    scopus 로고
    • Mutation of a critical tryptophan to lysine in avidin or streptavidin may explain why sea urchin fibropellin adopts an avidin-like domain
    • Laitinen O.H., Airenne K.J., Marttila A.T., Kulik T., Porkka E., Bayer E.A., et al. Mutation of a critical tryptophan to lysine in avidin or streptavidin may explain why sea urchin fibropellin adopts an avidin-like domain. FEBS Lett. 461 (1999) 52-58
    • (1999) FEBS Lett. , vol.461 , pp. 52-58
    • Laitinen, O.H.1    Airenne, K.J.2    Marttila, A.T.3    Kulik, T.4    Porkka, E.5    Bayer, E.A.6
  • 21
    • 0032577315 scopus 로고    scopus 로고
    • Structural studies of binding site tryptophan mutants in the high-affinity streptavidin-biotin complex
    • Freitag S., Le Trong I., Chilkoti A., Klumb L.A., Stayton P.S., and Stenkamp R.E. Structural studies of binding site tryptophan mutants in the high-affinity streptavidin-biotin complex. J. Mol. Biol. 279 (1998) 211-221
    • (1998) J. Mol. Biol. , vol.279 , pp. 211-221
    • Freitag, S.1    Le Trong, I.2    Chilkoti, A.3    Klumb, L.A.4    Stayton, P.S.5    Stenkamp, R.E.6
  • 22
    • 0030973204 scopus 로고    scopus 로고
    • Engineering subunit association of multisubunit proteins: a dimeric streptavidin
    • Sano T., Vajda S., Smith C.L., and Cantor C.R. Engineering subunit association of multisubunit proteins: a dimeric streptavidin. Proc. Natl Acad. Sci. USA 94 (1997) 6153-6158
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 6153-6158
    • Sano, T.1    Vajda, S.2    Smith, C.L.3    Cantor, C.R.4
  • 23
    • 17144400352 scopus 로고    scopus 로고
    • Novel avidin-like protein from a root nodule symbiotic bacterium, Bradyrhizobium japonicum
    • Nordlund H.R., Hytonen V.P., Laitinen O.H., and Kulomaa M.S. Novel avidin-like protein from a root nodule symbiotic bacterium, Bradyrhizobium japonicum. J. Biol. Chem. 280 (2005) 13250-13255
    • (2005) J. Biol. Chem. , vol.280 , pp. 13250-13255
    • Nordlund, H.R.1    Hytonen, V.P.2    Laitinen, O.H.3    Kulomaa, M.S.4
  • 25
    • 0037562601 scopus 로고    scopus 로고
    • The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments
    • Gonzalez V., Bustos P., Ramirez-Romero M.A., Medrano-Soto A., Salgado H., Hernandez-Gonzalez I., et al. The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments. Genome Biol. 4 (2003) R36
    • (2003) Genome Biol. , vol.4
    • Gonzalez, V.1    Bustos, P.2    Ramirez-Romero, M.A.3    Medrano-Soto, A.4    Salgado, H.5    Hernandez-Gonzalez, I.6
  • 27
    • 77956990599 scopus 로고
    • Spectrophotometric determination of avidin and biotin
    • Green N.M. Spectrophotometric determination of avidin and biotin. Methods Enzymol. 18 (1970) 418-424
    • (1970) Methods Enzymol. , vol.18 , pp. 418-424
    • Green, N.M.1
  • 31
    • 0031956609 scopus 로고    scopus 로고
    • Thermodynamic and structural consequences of flexible loop deletion by circular permutation in the streptavidin-biotin system
    • Chu V., Freitag S., Le Trong I., Stenkamp R.E., and Stayton P.S. Thermodynamic and structural consequences of flexible loop deletion by circular permutation in the streptavidin-biotin system. Protein Sci. 7 (1998) 848-859
    • (1998) Protein Sci. , vol.7 , pp. 848-859
    • Chu, V.1    Freitag, S.2    Le Trong, I.3    Stenkamp, R.E.4    Stayton, P.S.5
  • 32
    • 0028910003 scopus 로고
    • Site-directed mutagenesis studies of the high affinity streptavidin biotin complex: contributions of tryptophan residues 79, 108 and 120
    • Chilkoti A., Tan P.H., and Stayton P.S. Site-directed mutagenesis studies of the high affinity streptavidin biotin complex: contributions of tryptophan residues 79, 108 and 120. Proc. Natl Acad. Sci. USA 92 (1995) 1754-1758
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 1754-1758
    • Chilkoti, A.1    Tan, P.H.2    Stayton, P.S.3
  • 33
    • 0028938525 scopus 로고
    • Intersubunit contacts made by tryptophan 120 with biotin are essential for both strong biotin binding and biotin-induced tighter subunit association of streptavidin
    • Sano T., and Cantor C.R. Intersubunit contacts made by tryptophan 120 with biotin are essential for both strong biotin binding and biotin-induced tighter subunit association of streptavidin. Proc. Natl Acad. Sci. USA 92 (1995) 3180-3184
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 3180-3184
    • Sano, T.1    Cantor, C.R.2
  • 35
    • 10644245917 scopus 로고    scopus 로고
    • Efficient production of active chicken avidin using a bacterial signal peptide in Escherichia coli
    • Hytönen V.P., Laitinen O.H., Airenne T.T., Kidron H., Meltola N.J., Porkka E., et al. Efficient production of active chicken avidin using a bacterial signal peptide in Escherichia coli. Biochem. J. 384 (2004) 385-390
    • (2004) Biochem. J. , vol.384 , pp. 385-390
    • Hytönen, V.P.1    Laitinen, O.H.2    Airenne, T.T.3    Kidron, H.4    Meltola, N.J.5    Porkka, E.6
  • 36
    • 0031059866 scopus 로고    scopus 로고
    • Processing X-ray data collected in oscillation mode
    • Otwinowski Z., and Minor W. Processing X-ray data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-325
    • (1997) Methods Enzymol. , vol.276 , pp. 307-325
    • Otwinowski, Z.1    Minor, W.2
  • 40
    • 13244281317 scopus 로고    scopus 로고
    • Coot: model-building tools for molecular graphics
    • Epub 2004 Nov 26
    • Emsley P., and Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr., Sect. D: Biol. Crystallogr. 60 (2004) 2126-2132 Epub 2004 Nov 26
    • (2004) Acta Crystallogr., Sect. D: Biol. Crystallogr. , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 42
    • 0347383760 scopus 로고    scopus 로고
    • ARP/wARP and automatic interpretation of protein electron density maps
    • Morris R.J., Perrakis A., and Lamzin V.S. ARP/wARP and automatic interpretation of protein electron density maps. Methods Enzymol. 374 (2003) 229-244
    • (2003) Methods Enzymol. , vol.374 , pp. 229-244
    • Morris, R.J.1    Perrakis, A.2    Lamzin, V.S.3
  • 43
    • 0035788131 scopus 로고    scopus 로고
    • Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps
    • Epub 2001 Sep 21
    • Vagin A.A., and Isupov M.N. Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps. Acta Crystallogr., Sect. D: Biol. Crystallogr. 57 (2001) 1451-1456 Epub 2001 Sep 21
    • (2001) Acta Crystallogr., Sect. D: Biol. Crystallogr. , vol.57 , pp. 1451-1456
    • Vagin, A.A.1    Isupov, M.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.