-
1
-
-
20444502087
-
Structure, folding and mechanisms of ribozymes
-
Lilley, D. M. J. 2005. Structure, folding and mechanisms of ribozymes. Curr. Opin. Struct. Biol. 15:313-323.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 313-323
-
-
Lilley, D.M.J.1
-
2
-
-
0030266484
-
Sensing the heat: The application of isothermal titration calorimetry to thermodynamic studies of biomolecular interactions
-
Ladbury, J. E., and B. Z. Chowdhry. 1996. Sensing the heat: the application of isothermal titration calorimetry to thermodynamic studies of biomolecular interactions. Chem. Biol. 3:791-801.
-
(1996)
Chem. Biol
, vol.3
, pp. 791-801
-
-
Ladbury, J.E.1
Chowdhry, B.Z.2
-
3
-
-
37549057040
-
Applications of isothermal titration calorimetry in RNA biochemistry and biophysics
-
Feig, A. L. 2007. Applications of isothermal titration calorimetry in RNA biochemistry and biophysics. Biopolymers. 87:293-300.
-
(2007)
Biopolymers
, vol.87
, pp. 293-300
-
-
Feig, A.L.1
-
4
-
-
30744467696
-
Heat capacity changes associated with DNA duplex formation: Salt- and sequence-dependent effects
-
Mikulecky, P. J., and A. L. Feig. 2006. Heat capacity changes associated with DNA duplex formation: salt- and sequence-dependent effects. Biochemistry. 45:604-616.
-
(2006)
Biochemistry
, vol.45
, pp. 604-616
-
-
Mikulecky, P.J.1
Feig, A.L.2
-
5
-
-
0037154101
-
Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops
-
Mathews, D. H., and D. H. Turner. 2002. Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops. Biochemistry. 41:869-880.
-
(2002)
Biochemistry
, vol.41
, pp. 869-880
-
-
Mathews, D.H.1
Turner, D.H.2
-
6
-
-
0035814826
-
Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: An isothermal titration calorimetric study
-
Hammann, C., A. Cooper, and D. M. J. Lilley. 2001. Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: an isothermal titration calorimetric study. Biochemistry. 40:1423-1429.
-
(2001)
Biochemistry
, vol.40
, pp. 1423-1429
-
-
Hammann, C.1
Cooper, A.2
Lilley, D.M.J.3
-
7
-
-
2442440301
-
Entropy-driven folding of an RNA helical junction: An isothermal titration calorimetric analysis of the hammerhead ribozyme
-
Mikulecky, P. J., J. C. Takach, and A. L. Feig. 2004. Entropy-driven folding of an RNA helical junction: an isothermal titration calorimetric analysis of the hammerhead ribozyme. Biochemistry. 43:5870-5881.
-
(2004)
Biochemistry
, vol.43
, pp. 5870-5881
-
-
Mikulecky, P.J.1
Takach, J.C.2
Feig, A.L.3
-
8
-
-
0035997396
-
Catalytic strategies of the hepatitis delta virus ribozymes
-
Shih, I. H., and M. D. Been. 2002. Catalytic strategies of the hepatitis delta virus ribozymes. Annu. Rev. Biochem. 71:887-917.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 887-917
-
-
Shih, I.H.1
Been, M.D.2
-
9
-
-
0345255939
-
Ribozyme-based gene-inactivation systems require a fine comprehension of their substrates specificities; The case of delta ribozyme
-
Bergeron, L., Jr., J. Ouellet, and J. P. Perreault. 2003. Ribozyme-based gene-inactivation systems require a fine comprehension of their substrates specificities; The case of delta ribozyme. Curr. Med. Chem. 10:2589-2597.
-
(2003)
Curr. Med. Chem
, vol.10
, pp. 2589-2597
-
-
Bergeron Jr., L.1
Ouellet, J.2
Perreault, J.P.3
-
10
-
-
0033053643
-
A nested pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes
-
Wadkins, T. S., A. T. Perrotta, A. R. Ferré D'Amaré, J. A. Doudna, and M. D. Been. 1999. A nested pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes. RNA. 6:720-727.
-
(1999)
RNA
, vol.6
, pp. 720-727
-
-
Wadkins, T.S.1
Perrotta, A.T.2
Ferré D'Amaré, A.R.3
Doudna, J.A.4
Been, M.D.5
-
11
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferré D'Amaré, A. R., K. Zhou, and J. A. Doudna. 1998. Crystal structure of a hepatitis delta virus ribozyme. Nature. 395:567-574.
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferré D'Amaré, A.R.1
Zhou, K.2
Doudna, J.A.3
-
12
-
-
2442641641
-
A conformational switch controls hepatitis delta virus ribozyme catalysis
-
Ke, A., K. Zhou, F. Ding, J. Cate, and J. A. Doudna. 2004. A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature. 429:201-205.
-
(2004)
Nature
, vol.429
, pp. 201-205
-
-
Ke, A.1
Zhou, K.2
Ding, F.3
Cate, J.4
Doudna, J.A.5
-
14
-
-
0037135546
-
Kinetic and binding analysis of the catalytic involvement of ribose moieties of a trans-acting delta ribozyme
-
Fiola, K., and J. P. Perreault. 2002. Kinetic and binding analysis of the catalytic involvement of ribose moieties of a trans-acting delta ribozyme. J. Biol. Chem. 277:26508-26516.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 26508-26516
-
-
Fiola, K.1
Perreault, J.P.2
-
15
-
-
0036444163
-
Site-specific modification of functional groups in genomic hepatitis delta virus (HDV) ribozyme
-
Nishikawa, F., M. Shiria, and S. Nishikawa. 2002. Site-specific modification of functional groups in genomic hepatitis delta virus (HDV) ribozyme. Eur. J. Biochem. 269:5792-5803.
-
(2002)
Eur. J. Biochem
, vol.269
, pp. 5792-5803
-
-
Nishikawa, F.1
Shiria, M.2
Nishikawa, S.3
-
16
-
-
33845909854
-
Examination of the folding pathway of the antigenomic hepatitis delta virus ribozyme reveals key interactions of the L3 loop
-
Reymond, C., J. Ouellet, M. Bisaillon, and J. P. Perreault. 2006. Examination of the folding pathway of the antigenomic hepatitis delta virus ribozyme reveals key interactions of the L3 loop. RNA. 13:44-54.
-
(2006)
RNA
, vol.13
, pp. 44-54
-
-
Reymond, C.1
Ouellet, J.2
Bisaillon, M.3
Perreault, J.P.4
-
17
-
-
3042667859
-
Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate
-
Ouellet, J., and J. P. Perreault. 2004. Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate. RNA. 10:1059-1072.
-
(2004)
RNA
, vol.10
, pp. 1059-1072
-
-
Ouellet, J.1
Perreault, J.P.2
-
18
-
-
0037154091
-
Reaction pathway of the trans-acting hepatitis delta virus ribozyme: A conformational change accompanies catalysis
-
Pereira, M. J. B., D. A. Harris, D. Rueda, and N. G. Walters. 2002. Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis. Biochemistry. 41:730-740.
-
(2002)
Biochemistry
, vol.41
, pp. 730-740
-
-
Pereira, M.J.B.1
Harris, D.A.2
Rueda, D.3
Walters, N.G.4
-
19
-
-
0037044320
-
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis
-
Harris, D. A., D. Rueda, and N. G. Walter. 2002. Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis. Biochemistry. 41:12051-12061.
-
(2002)
Biochemistry
, vol.41
, pp. 12051-12061
-
-
Harris, D.A.1
Rueda, D.2
Walter, N.G.3
-
20
-
-
0034643251
-
The kinetics and magnesium requirements for the folding of antigenomic delta ribozymes
-
Ananvoranich, S., and J. P. Perreault. 2000. The kinetics and magnesium requirements for the folding of antigenomic delta ribozymes. Biochem. Biophys. Res. Commun. 270:600-607.
-
(2000)
Biochem. Biophys. Res. Commun
, vol.270
, pp. 600-607
-
-
Ananvoranich, S.1
Perreault, J.P.2
-
21
-
-
36749060725
-
A novel structural rearrangement of hepatitis delta virus antigenomic ribozyme
-
Nehdi, A., J. Perreault, J. D. Beaudoin, and J. P. Perreault. 2007. A novel structural rearrangement of hepatitis delta virus antigenomic ribozyme. Nucleic Acids Res. 35:6820-6831.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6820-6831
-
-
Nehdi, A.1
Perreault, J.2
Beaudoin, J.D.3
Perreault, J.P.4
-
22
-
-
33748559498
-
Nucleobase catalysis in ribozyme mechanism
-
Bevilacqua, P. C., and R. Yajima. 2006. Nucleobase catalysis in ribozyme mechanism. Curr. Opin. Chem. Biol. 10:455-464.
-
(2006)
Curr. Opin. Chem. Biol
, vol.10
, pp. 455-464
-
-
Bevilacqua, P.C.1
Yajima, R.2
-
23
-
-
0033787391
-
Ribozyme structure and mechanism
-
Doherty, E. A., and J. A. Doudna. 2000. Ribozyme structure and mechanism. Annu. Rev. Biochem. 69:597-615.
-
(2000)
Annu. Rev. Biochem
, vol.69
, pp. 597-615
-
-
Doherty, E.A.1
Doudna, J.A.2
-
24
-
-
0345293146
-
On the value of can low affinity systems be studied by isothermal titration calorimetry?
-
Turnbull, W. B., and A. H. Daranas. 2003. On the value of can low affinity systems be studied by isothermal titration calorimetry? J. Am. Chem. Soc. 125:14859-14866.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 14859-14866
-
-
Turnbull, W.B.1
Daranas, A.H.2
-
25
-
-
0024356301
-
Rapid measurement of binding constants and heats of binding using a new titration calorimeter
-
Wiseman, T., S. Williston, J. F. Brandts, and L. N. Lin. 1989. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179:131-137.
-
(1989)
Anal. Biochem
, vol.179
, pp. 131-137
-
-
Wiseman, T.1
Williston, S.2
Brandts, J.F.3
Lin, L.N.4
-
26
-
-
0032396512
-
Kinetic analysis of delta ribozyme cleavage
-
Mercure, S., D. A. Lafontaine, S. Ananvoranich, and J. P. Perreault. 1998. Kinetic analysis of delta ribozyme cleavage. Biochemistry. 37:16975-16982.
-
(1998)
Biochemistry
, vol.37
, pp. 16975-16982
-
-
Mercure, S.1
Lafontaine, D.A.2
Ananvoranich, S.3
Perreault, J.P.4
-
27
-
-
0023221419
-
A small catalytic oligoribonucleotide
-
Uhlenbeck, O. C. 1987. A small catalytic oligoribonucleotide. Nature. 328:596-600.
-
(1987)
Nature
, vol.328
, pp. 596-600
-
-
Uhlenbeck, O.C.1
-
28
-
-
0035836722
-
The thermodynamic origin of the stability of a thermophilic ribozyme
-
Fang, X. W., B. L. Golden, K. Littrell, V. Shelton, P. Thiyagarajan, et al. 2001. The thermodynamic origin of the stability of a thermophilic ribozyme. Proc. Natl. Acad. Sci. USA. 98:4355-4360.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4355-4360
-
-
Fang, X.W.1
Golden, B.L.2
Littrell, K.3
Shelton, V.4
Thiyagarajan, P.5
-
29
-
-
3242670640
-
Heat capacity changes in RNA folding: Application of perturbation theory to hammerhead ribozyme cold denaturation
-
Mikulecky, P. J., and A. L. Feig. 2004. Heat capacity changes in RNA folding: application of perturbation theory to hammerhead ribozyme cold denaturation. Nucleic Acids Res. 32:3967-3976.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3967-3976
-
-
Mikulecky, P.J.1
Feig, A.L.2
-
30
-
-
33845909256
-
The interaction networks of structured RNAs
-
Lescoute, A., and E. Westhof. 2006. The interaction networks of structured RNAs. Nucleic Acids Res. 34:6587-6604.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6587-6604
-
-
Lescoute, A.1
Westhof, E.2
|