메뉴 건너뛰기




Volumn 47, Issue 52, 2008, Pages 13788-13799

Effect of the insertion of a glycine residue into the loop spanning residues 536-541 on the semiquinone state and redox properties of the flavin mononucleotide-binding domain of flavocytochrome p450bm-3 from bacillus megaterium

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE GROUPS; BACILLUS MEGATERIUM; BACKBONE CARBONYL; BINDING DOMAIN; BINDING LOOP; COFACTORS; CONFORMATIONAL CHANGE; CYTOCHROME C; ELECTRON TRANSFERRING; FLAVIN MONONUCLEOTIDES; FLAVOCYTOCHROME; FLAVODOXIN; GLYCINE RESIDUES; HYDROGEN BONDINGS; MIDPOINT POTENTIALS; MOLECULAR MODELS; NADPH-CYTOCHROME P450 REDUCTASE; NH GROUPS; NITRIC-OXIDE SYNTHASE; NMR DATA; OXIDIZED STATE; PURIFIED PROTEIN; RAPID REDUCTION; REDOX PROPERTY; REDUCTASE ACTIVITY; SEMIQUINONES; STRUCTURAL CHARACTERISTICS; STRUCTURAL SIMILARITY; THERMODYNAMIC STABILIZATION; WILD TYPES;

EID: 58849120066     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi800954h     Document Type: Article
Times cited : (15)

References (50)
  • 2
    • 34250215649 scopus 로고    scopus 로고
    • The bacterial P450 BM3: A prototype for a biocatalyst with human P450 activities
    • Yun, C. H., Kim, K. H., Kim, D. H., Jung, H. C., and Pan, J. G. (2007) The bacterial P450 BM3: A prototype for a biocatalyst with human P450 activities. Trends Biotechnol. 25, 289-298.
    • (2007) Trends Biotechnol. , vol.25 , pp. 289-298
    • Yun, C.H.1    Kim, K.H.2    Kim, D.H.3    Jung, H.C.4    Pan, J.G.5
  • 3
    • 0022878676 scopus 로고
    • Characterization of a catalytically self-sufficient 119,000-dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium
    • Narhi, L. O., and Fulco, A. J. (1986) Characterization of a catalytically self-sufficient 119,000-dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium. J. Biol. Chem. 261, 7160-7169.
    • (1986) J. Biol. Chem. , vol.261 , pp. 7160-7169
    • Narhi, L.O.1    Fulco, A.J.2
  • 4
    • 0024410210 scopus 로고
    • Coding nucleotide, 5′ regulatory, and deduced amino acid sequences of P-450BM-3, a single peptide cytochrome P-450:NADPH-P-450 reductase from Bacillus megaterium
    • Ruettinger, R. T., Wen, L. P., and Fulco, A. J. (1989) Coding nucleotide, 5′ regulatory, and deduced amino acid sequences of P-450BM-3, a single peptide cytochrome P-450:NADPH-P-450 reductase from Bacillus megaterium. J. Biol. Chem. 264, 10987-10995.
    • (1989) J. Biol. Chem. , vol.264 , pp. 10987-10995
    • Ruettinger, R.T.1    Wen, L.P.2    Fulco, A.J.3
  • 6
    • 0025976756 scopus 로고
    • An unusual yet strongly conserved flavoprotein reductase in bacteria and mammals
    • Porter, T. D. (1991) An unusual yet strongly conserved flavoprotein reductase in bacteria and mammals. Trends Biochem. Sci. 16, 154-158.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 154-158
    • Porter, T.D.1
  • 7
    • 0023044638 scopus 로고
    • NADPH-cytochrome P-450 oxidoreductase: Flavin mononucleotide and flavin adenine dinucleotide domains evolved from different flavoproteins
    • Porter, T. D., and Kasper, C. B. (1986) NADPH-cytochrome P-450 oxidoreductase: Flavin mononucleotide and flavin adenine dinucleotide domains evolved from different flavoproteins. Biochemistry 25, 1682-1687.
    • (1986) Biochemistry , vol.25 , pp. 1682-1687
    • Porter, T.D.1    Kasper, C.B.2
  • 10
    • 0030873316 scopus 로고    scopus 로고
    • Three-dimensional structure of NADPH-cytochrome P450 reductase: Prototype for FMN- And FAD-containing enzymes
    • Wang, M., Roberts, D. L., Paschke, R., Shea, T. M., Masters, B. S., and Kim, J. J. (1997) Three-dimensional structure of NADPH-cytochrome P450 reductase: Prototype for FMN- and FAD-containing enzymes. Proc. Natl. Acad. Sci. U.S.A. 94, 8411-8416.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 8411-8416
    • Wang, M.1    Roberts, D.L.2    Paschke, R.3    Shea, T.M.4    Masters, B.S.5    Kim, J.J.6
  • 11
    • 0035916295 scopus 로고    scopus 로고
    • Determination of the redox properties of human NADPH-cytochrome P450 reductase
    • Munro, A. W., Noble, M. A., Robledo, L., Daff, S. N., and Chapman, S. K. (2001) Determination of the redox properties of human NADPH-cytochrome P450 reductase. Biochemistry 40, 1956-1963.
    • (2001) Biochemistry , vol.40 , pp. 1956-1963
    • Munro, A.W.1    Noble, M.A.2    Robledo, L.3    Daff, S.N.4    Chapman, S.K.5
  • 12
    • 0029982439 scopus 로고    scopus 로고
    • Equilibrium and transient state spectrophotometric studies of the mechanism of reduction of the flavoprotein domain of P450BM-3
    • Sevrioukova, I., Shaffer, C., Bailou, D. P., and Peterson, J. A. (1996) Equilibrium and transient state spectrophotometric studies of the mechanism of reduction of the flavoprotein domain of P450BM-3. Biochemistry 35, 7058-7068.
    • (1996) Biochemistry , vol.35 , pp. 7058-7068
    • Sevrioukova, I.1    Shaffer, C.2    Bailou, D.P.3    Peterson, J.A.4
  • 13
    • 0030816684 scopus 로고    scopus 로고
    • Functional interactions in cytochrome P450BM3: Flavin semiquinone intermediates, role of NADP(H), and mechanism of electron transfer by the flavoprotein domain
    • Murataliev, M. B., Klein, M., Fulco, A., and Feyereisen, R. (1997) Functional interactions in cytochrome P450BM3: Flavin semiquinone intermediates, role of NADP(H), and mechanism of electron transfer by the flavoprotein domain. Biochemistry 36, 8401-8412.
    • (1997) Biochemistry , vol.36 , pp. 8401-8412
    • Murataliev, M.B.1    Klein, M.2    Fulco, A.3    Feyereisen, R.4
  • 14
    • 0025978284 scopus 로고
    • Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures
    • Watt, W., Tulinsky, A., Swenson, R. P., and Watenpaugh, K. D. (1991) Comparison of the crystal structures of a flavodoxin in its three oxidation states at cryogenic temperatures. J. Mol. Biol. 218, 195-208.
    • (1991) J. Mol. Biol. , vol.218 , pp. 195-208
    • Watt, W.1    Tulinsky, A.2    Swenson, R.P.3    Watenpaugh, K.D.4
  • 15
    • 0030456586 scopus 로고    scopus 로고
    • The cumulative electrostatic effect of aromatic stacking interactions and the negative electrostatic environment of the flavin mononucleotide binding site is a major determinant of the reduction potential for the flavodoxin from Desulfovibrio vulgaris Hildenboroughl
    • Zhou, Z., and Swenson, R. P. (1996) The cumulative electrostatic effect of aromatic stacking interactions and the negative electrostatic environment of the flavin mononucleotide binding site is a major determinant of the reduction potential for the flavodoxin from Desulfovibrio vulgaris [Hildenboroughl. Biochemistry 35, 15980-15988.
    • (1996) Biochemistry , vol.35 , pp. 15980-15988
    • Zhou, Z.1    Swenson, R.P.2
  • 16
    • 0032499631 scopus 로고    scopus 로고
    • Modulation of the redox potentials of FMN in Desulfovibrio vulgaris flavodoxin: Thermo-dynamic properties and crystal structures of glycine-61 mutants
    • O'Farrell, P. A., Walsh, M. A., McCarthy, A. A., Higgins, T. M., Voordouw, G., and Mayhew, S. G. (1998) Modulation of the redox potentials of FMN in Desulfovibrio vulgaris flavodoxin: Thermo-dynamic properties and crystal structures of glycine-61 mutants. Biochemistry 37, 8405-8416.
    • (1998) Biochemistry , vol.37 , pp. 8405-8416
    • O'Farrell, P.A.1    Walsh, M.A.2    McCarthy, A.A.3    Higgins, T.M.4    Voordouw, G.5    Mayhew, S.G.6
  • 17
    • 0031024423 scopus 로고    scopus 로고
    • Control of oxidation-reduction potentials in flavodoxin from Clostridium beijerinckii: The role of conformation changes
    • Ludwig, M. L., Pattridge, K. A., Metzger, A. L., Dixon, M. M., Eren, M., Feng, Y., and Swenson, R. P. (1997) Control of oxidation-reduction potentials in flavodoxin from Clostridium beijerinckii: The role of conformation changes. Biochemistry 36, 1259-1280.
    • (1997) Biochemistry , vol.36 , pp. 1259-1280
    • Ludwig, M.L.1    Pattridge, K.A.2    Metzger, A.L.3    Dixon, M.M.4    Eren, M.5    Feng, Y.6    Swenson, R.P.7
  • 18
    • 0017709121 scopus 로고
    • Structure of the semiquinone form of flavodoxin from Clostridum MP. Extension of 1.8 Å resolution and some comparisons with the oxidized state
    • Smith, W. W., Burnett, R. M., Darling, G. D., and Ludwig, M. L. (1977) Structure of the semiquinone form of flavodoxin from Clostridum MP. Extension of 1.8 Å resolution and some comparisons with the oxidized state. J. Mol. Biol. 117, 195-225.
    • (1977) J. Mol. Biol. , vol.117 , pp. 195-225
    • Smith, W.W.1    Burnett, R.M.2    Darling, G.D.3    Ludwig, M.L.4
  • 21
    • 77950173907 scopus 로고    scopus 로고
    • Ph.D. Thesis, The Ohio State University, Columbus, OH.
    • Kasim, M. (2002) Ph.D. Thesis, The Ohio State University, Columbus, OH.
    • (2002)
    • Kasim, M.1
  • 23
    • 0034966101 scopus 로고    scopus 로고
    • Inexpensive purification of P450 reductase and other proteins using 2′,5′-adenosine diphosphate agarose affinity columns
    • Rock, D., and Jones, J. P. (2001) Inexpensive purification of P450 reductase and other proteins using 2′,5′-adenosine diphosphate agarose affinity columns. Protein Expression Purif. 22, 82-83.
    • (2001) Protein Expression Purif. , vol.22 , pp. 82-83
    • Rock, D.1    Jones, J.P.2
  • 24
    • 33845967142 scopus 로고    scopus 로고
    • Diminished FAD binding in the Y459H and V492E Antley-Bixler syndrome mutants of human cytochrome P450 reductase
    • Marohnic, C. C., Panda, S. P., Martasek, P., and Masters, B. S. (2006) Diminished FAD binding in the Y459H and V492E Antley-Bixler syndrome mutants of human cytochrome P450 reductase. J. Biol. Chem. 281, 35975-35982.
    • (2006) J. Biol. Chem. , vol.281 , pp. 35975-35982
    • Marohnic, C.C.1    Panda, S.P.2    Martasek, P.3    Masters, B.S.4
  • 26
    • 0034622528 scopus 로고    scopus 로고
    • The FMN-binding domain of cytochrome P450BM-3: Resolution, reconstitution, and flavin analogue substitution
    • Haines, D. C., Sevrioukova, I. F., and Peterson, J. A. (2000) The FMN-binding domain of cytochrome P450BM-3: Resolution, reconstitution, and flavin analogue substitution. Biochemistry 39, 9419-9429.
    • (2000) Biochemistry , vol.39 , pp. 9419-9429
    • Haines, D.C.1    Sevrioukova, I.F.2    Peterson, J.A.3
  • 27
    • 0016615766 scopus 로고
    • Physico-chemical properties of flavodoxin from Desulfovibrio vulgaris. Biochim
    • Dubourdieu, M., le Gall, J., and Favaudon, V. (1975) Physico-chemical properties of flavodoxin from Desulfovibrio vulgaris. Biochim. Biophys. Acta 376, 519-532.
    • (1975) Biophys. Acta , vol.376 , pp. 519-532
    • Dubourdieu, M.1    Le Gall, J.2    Favaudon, V.3
  • 28
    • 0033152446 scopus 로고    scopus 로고
    • The midpoint potentials for the oxidized-semiquinone couple for Gly57 mutants of the Clostridium beijerinckii flavodoxin correlate with changes in the hydrogen-bonding interaction with the proton on N(5) of the reduced flavin mononucleotide cofactor as measured by NMR chemical shift temperature dependencies
    • Chang, F. C., and Swenson, R. P. (1999) The midpoint potentials for the oxidized-semiquinone couple for Gly57 mutants of the Clostridium beijerinckii flavodoxin correlate with changes in the hydrogen-bonding interaction with the proton on N(5) of the reduced flavin mononucleotide cofactor as measured by NMR chemical shift temperature dependencies. Biochemistry 38, 7168-7176.
    • (1999) Biochemistry , vol.38 , pp. 7168-7176
    • Chang, F.C.1    Swenson, R.P.2
  • 29
    • 0029338320 scopus 로고
    • Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation
    • Mori, S., Abeygunawardana, C., Johnson, M. O., and van Zijl, P. C. (1995) Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation. J. Magn. Reson., Ser. B 108, 94-98.
    • (1995) J. Magn. Reson., Ser. B , vol.108 , pp. 94-98
    • Mori, S.1    Abeygunawardana, C.2    Johnson, M.O.3    Van Zijl, P.C.4
  • 30
    • 0027522735 scopus 로고
    • Critical residues involved in FMN binding and catalytic activity in cytochrome P450BM-3
    • Klein, M. L., and Fulco, A. J. (1993) Critical residues involved in FMN binding and catalytic activity in cytochrome P450BM-3. J. Biol. Chem. 268, 7553-7561.
    • (1993) J. Biol. Chem. , vol.268 , pp. 7553-7561
    • Klein, M.L.1    Fulco, A.J.2
  • 31
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 32
    • 0025398721 scopus 로고
    • WHAT IF: A molecular modeling and drug design program
    • Vriend, G. (1990) WHAT IF: A molecular modeling and drug design program. J. Mol. Graphics 8, 52-56.
    • (1990) J. Mol. Graphics , vol.8 , pp. 52-56
    • Vriend, G.1
  • 33
    • 0017858860 scopus 로고
    • Hydrogen bonding of flavoprotein. I. Effect of hydrogen bonding on electronic spectra of flavoprotein
    • Nishimoto, K., Watanabe, Y., and Yagi, K. (1978) Hydrogen bonding of flavoprotein. I. Effect of hydrogen bonding on electronic spectra of flavoprotein. Biochim. Biophys. Acta 526, 34-41.
    • (1978) Biochim. Biophys. Acta , vol.526 , pp. 34-41
    • Nishimoto, K.1    Watanabe, Y.2    Yagi, K.3
  • 34
    • 0030014679 scopus 로고    scopus 로고
    • The flavoprotein domain of P450BM-3: Expression, purification, and properties of the flavin adenine dinucleotide- And flavin mononucleotide-binding subdomains
    • Sevrioukova, I., Truan, C., and Peterson, J. A. (1996) The flavoprotein domain of P450BM-3: Expression, purification, and properties of the flavin adenine dinucleotide- and flavin mononucleotide-binding subdomains. Biochemistry 35, 7528-7535.
    • (1996) Biochemistry , vol.35 , pp. 7528-7535
    • Sevrioukova, I.1    Truan, C.2    Peterson, J.A.3
  • 35
    • 0023005746 scopus 로고
    • A comparative carbon-13, nitrogen-15, and phosphorus-31 nuclear magnetic resonance study on the flavodoxins from Clostridium MP, Megasphaera elsdenii, and Azotobacter vinelandii
    • Vervoort, J., Muller, F., Mayhew, S. C., van den Berg, W. A., Moonen, C. T., and Bacher, A. (1986) A comparative carbon-13, nitrogen-15, and phosphorus-31 nuclear magnetic resonance study on the flavodoxins from Clostridium MP, Megasphaera elsdenii, and Azotobacter vinelandii. Biochemistry 25, 6789-6799.
    • (1986) Biochemistry , vol.25 , pp. 6789-6799
    • Vervoort, J.1    Muller, F.2    Mayhew, S.C.3    Van Den Berg, W.A.4    Moonen, C.T.5    Bacher, A.6
  • 37
    • 0021759003 scopus 로고
    • Reinvestigation of the structure of oxidized and reduced flavin: Carbon-13 and nitrogen-15 nuclear magnetic-resonance study
    • Moonen, C. T. W., Vervoort, J., and Muller, F. (1984) Reinvestigation of the structure of oxidized and reduced flavin: Carbon-13 and nitrogen-15 nuclear magnetic-resonance study. Biochemistry 23, 4859-4867.
    • (1984) Biochemistry , vol.23 , pp. 4859-4867
    • Moonen, C.T.W.1    Vervoort, J.2    Muller, F.3
  • 38
    • 0035979352 scopus 로고    scopus 로고
    • Role of hydrogen bonding interactions to N(3)H of the flavin mononucleotide cofactor in the modulation of the redox potentials of the Clostridium beijerinckii flavodoxin
    • Bradley, L. H., and Swenson, R. P. (2001) Role of hydrogen bonding interactions to N(3)H of the flavin mononucleotide cofactor in the modulation of the redox potentials of the Clostridium beijerinckii flavodoxin. Biochemistry 40, 8686-8695.
    • (2001) Biochemistry , vol.40 , pp. 8686-8695
    • Bradley, L.H.1    Swenson, R.P.2
  • 39
    • 0035215289 scopus 로고    scopus 로고
    • Amide proton temperature coefficients as hydrogen bond indicators in proteins
    • Cierpicki, T., and Otlewski, J. (2001) Amide proton temperature coefficients as hydrogen bond indicators in proteins. J. Biomol. NMR 21, 249-261.
    • (2001) J. Biomol. NMR , vol.21 , pp. 249-261
    • Cierpicki, T.1    Otlewski, J.2
  • 42
    • 21744445958 scopus 로고    scopus 로고
    • Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli
    • Sibille, N., Blackledge, M., Brutscher, B., Coves, J., and Bersch, B. (2005) Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli. Biochemistry 44, 9086-9095.
    • (2005) Biochemistry , vol.44 , pp. 9086-9095
    • Sibille, N.1    Blackledge, M.2    Brutscher, B.3    Coves, J.4    Bersch, B.5
  • 43
    • 0000911629 scopus 로고    scopus 로고
    • (Stevenson, K. J., Massey, V. Williams, C. H., Jr., Eds.) pp University of Calgary Press, Calgary, AB.
    • Sharkey, C., Mayhew, S. C., Higgins, T. M., and Walsh, M. A. (1997) in Flavins and Flavoproteins 1996 (Stevenson, K. J., Massey, V., and Williams, C. H., Jr., Eds.) pp 445-448, University of Calgary Press, Calgary, AB.
    • (1997) Flavins and Flavoproteins 1996 , pp. 445-448
    • Sharkey, C.1    Mayhew, S.C.2    Higgins, T.M.3    Walsh, M.A.4
  • 44
    • 0029953886 scopus 로고    scopus 로고
    • Crystal structure of flavodoxin from Desulfovibrio desulfuricans ATCC 27774 in two oxidation states
    • Romero, A., Caldeira, J., Legall, J., Moura, I., Moura, J. J., and Romao, M. J. (1996) Crystal structure of flavodoxin from Desulfovibrio desulfuricans ATCC 27774 in two oxidation states. Eur. J. Biochem. 239, 190-196.
    • (1996) Eur. J. Biochem. , vol.239 , pp. 190-196
    • Romero, A.1    Caldeira, J.2    Legall, J.3    Moura, I.4    Moura, J.J.5    Romao, M.J.6
  • 46
    • 0034687779 scopus 로고    scopus 로고
    • Conformational energetics of a reverse turn in the Clostridium beijerinckii flavodoxin is directly coupled to the modulation of its oxidation-reduction potentials
    • Kasim, M., and Swenson, R. P. (2000) Conformational energetics of a reverse turn in the Clostridium beijerinckii flavodoxin is directly coupled to the modulation of its oxidation-reduction potentials. Biochemistry 39, 15322-15332.
    • (2000) Biochemistry , vol.39 , pp. 15322-15332
    • Kasim, M.1    Swenson, R.P.2
  • 47
    • 0014299673 scopus 로고
    • A Potentiometric study of the flavin semiquinone equilibrium
    • Draper, R. D., and Ingraham, L. L. (1968) A Potentiometric study of the flavin semiquinone equilibrium. Arch. Biochem. Biophys. 125, 802-808.
    • (1968) Arch. Biochem. Biophys. , vol.125 , pp. 802-808
    • Draper, R.D.1    Ingraham, L.L.2
  • 48
    • 42049103203 scopus 로고    scopus 로고
    • Redox potential difference between Desulfovibrio vulgaris and Clostridium beijerinckii flavodoxins
    • Ishikita, H. (2008) Redox potential difference between Desulfovibrio vulgaris and Clostridium beijerinckii flavodoxins. Biochemistry 47, 4394-4402.
    • (2008) Biochemistry , vol.47 , pp. 4394-4402
    • Ishikita, H.1
  • 50
    • 0023034992 scopus 로고
    • Preparation and characterization of FAD-dependent NADPH-cytochrome P-450 reductase
    • Kurzban, G. P., and Strobel, H. W. (1986) Preparation and characterization of FAD-dependent NADPH-cytochrome P-450 reductase. J. Biol. Chem. 261, 7824-7830.
    • (1986) J. Biol. Chem. , vol.261 , pp. 7824-7830
    • Kurzban, G.P.1    Strobel, H.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.