Studying of genetic diversity in Satsuma (Citrus unshiu) mandarin utilizing microsatellite markers

International Journal of Agricultural Research

Volumn 4, Issue 2, 2009, Pages 88-96

  Ghanbari, A ^a   Jelodar, Nadali Babaeian ^a   Rahiman, H ^a  

^a UNIVERSITY OF MAZANDARAN   (Iran)

Author keywords

Genetic diversity; Molecular marker; SSR; Unshiu mandarin

Indexed keywords

CITRUS UNSHIU;

EID: 58749112739     PISSN: 18164897     EISSN: None     Source Type: Journal    
DOI: 10.3923/ijar.2009.88.96     Document Type: Article

References (26)

1. Barkley, N.A., M.L. Roose, R.R. Krueger and C.T. Federici, 2006. Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs). Theor. Applied. Genet., 112: 1519-1531.
2. Banett, H.C. and A.M. Rhodes, 1976. A numerical taxonomic study of a Ynity relationships in cultivated citrus and its close relatives. Syst. Bot., 1: 105-136.
3. Breto, M.P., C. Ruiz, J.A. Pina and M.J. Asins, 2001. The diversi Wcation of citrus clementina Hort. Ex Tan., a vegetatively propagated crop species. Mol. Phylogenet. Evolu., 21: 285-293.
4. Brown, S.M., M.S. Hopkins, S.E. Mitchell, M.L. Senior and T.Y. Wang et al., 1996. Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum. Theor. Applied Genet., 93: 190-198.
5. Clark, M.S., 1997. In Plant Molecular Biology-A Laboratory Manual. 1st Edn., Verlog Berlin, Heidelberg, New York, pp: 305-328.
6. Colettafilho, H.D., M.A. Machado, M.L.P.N. Targon, M.C.P.Q.D.G. Moreira and J. Pompeu, 1998. Analysis of the genetic diversity among mandarians (Citrus spp.) using RAPD markers. Euphytica, 102: 133-139.
7. Cristofani, M., M.A. Machado, V.M. Novelli, A.A. Souza and M.L.P.N. Targon, 2003. Construction of linkage maps of Poncirus trifoliate and Citrus sunki based on microsatellite markers. Proceedings of the 9th International Society of Citriculture Congress, 203 Orlando, USA., pp: 175-178.
8. Federici, C.T., D.Q. Fang, R.W. Scora and M.L. Roose, 1998. Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis. Theor. Applied Genet., 94: 812-822.
9. Herrero, R., M.J. Asíns, E.A. Carbonell and L. Navarro, 1996. Genetic diversity in the orange subfamily aurantioideae-I. Intraspecies and intragenus genetic variability. Theor. Applied Genet., 92: 599-609.
10. Hokanson, S.C., A.K. Szewc-McFadden, W.F. Lamboy and J.R. McFerson, 1998. Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus £ domestica borkh. Core subset collection. Theor. Applied Genet., 97: 671-683.
11. Kantety, R.V., M. La Rota, D.E. Matthews and M.E. Sorrells, 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol., 48: 501-510.
12. Kijas, J.M.H., J.C.S. Fowler, C.A. Garbett and M.R. Thomas, 1994. Enrichment of microsatellites from the Citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques, 16: 657-662.
13. Liu, K., M. Goodman, S. Muse, J.S. Smith, E. Buckler and J. Doebley, 2003. Genetic structure and diversity among Maize inbred lines as inferred from DNA microsatellites. Genetics, 165: 2117-2128.
14. Luro, F., F. Laigret and J.M. Bove, 2000. Application of random amplified polymorphic DNA (RAPD) to citrus genetic and taxonomy. Proc. Int. Soc. Citricult., 1: 225-228.
15. Nei, M., 1972. Genetic distance between populations. Am. Naturalist, 106: 283-292.
16. Nicolosi, E., Z.N, Deng, A., Gentile, S. La Malfa, G. Continella and E. Tribulato, 2000. Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor. Applied Genet., 100: 1155-1166.
17. Primmer, C.R., A.P. Moller and H. Ellegren, 1996. A wide-range survey of cross-species microsatellite amplification in birds. Mol. Ecol., 5: 365-378.
18. Rohlf, F.J., 1998. NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System, Version 3.2. 1st Edn., Exeter Software, New York.
19. Ruiz, C., M. Paz Breto and M.J. Asíns, 2000. A quick methodology to identify sexual seedlings in citrus breeding programs using SSR markers. Euphytica, 112: 89-94.
20. Scarano, M.T., N. Tusa, L. Abbate, S. Lucretti, L. Nardi and S. Ferrante, 2003. Flow cytometry, SSR and modified AFLP markers for the identification of zygotic plantlets in back crosses between Femminello lemon cybrids (2n and 4n) and a diploid clone of Femminello lemon (Citrus limon L. burm. F.) tolerant to mal secco disease. Plant Sci., 164: 1009-1017.
21. Scora, R.W., 1975. On the history and origin of Citrus. Bull. Torrey Bot. Club, 102: 369-375.
22. Sneath, P.H.A. and R.R. Sokal, 1973. Numerical Taxonomy: The Principles and Practice of Numerical Classification. 1st Edn., W.H. Freeman, San Francisco, pp: 546.
23. Swingle, W.T. and P.C. Reece, 1967. The Botany of Citrus and its Wild Relatives. Vol 1. In: The Citrus Industry, Reuther, W., H.J. Webber and L.D. Batchelor (Eds.). University of California Press, Berkeley, pp: 190-430.
24. Tanaka, T., 1977. Fundamental discussion of citrus classification. Stud Citrologia, 14: 1-6.
25. Yeh, F.C., T. Boyle and Y. Rongcai, 1999. POPGEN version 1.31. Microsatellite Window Based Free Ware for Population Genetic Analysis.
26. Zane, L., L. Bargelloni and T. Patarnello, 2002. Strategies for microsatellite isolation: A review. Mol. Ecol., 11: 1-6.