Bacterial apbC protein has two biochemical activities that are required for in vivo function

Journal of Biological Chemistry

Volumn 284, Issue 1, 2009, Pages 110-118

  Boyd, Jeffrey M ^a   Sondelski, Jamie L ^a   Downs, Diana M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ATP HYDROLYSIS; ATP-ASE ACTIVITY; IN-VITRO; IN-VIVO;

BIOCHEMISTRY; FUNCTIONS; PROBABILITY DENSITY FUNCTION; SULFUR;

PROTEINS;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; IRON; PROTEIN APBC; SULFUR; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL KINETICS; BACTERIAL STRAIN; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME BINDING; HYDROLYSIS; IN VITRO STUDY; IN VIVO STUDY; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN PURIFICATION;

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; HYDROLYSIS; KINETICS; METALLOPROTEINS; PROTEIN BINDING; SALMONELLA TYPHIMURIUM;

BACTERIA (MICROORGANISMS);

EID: 58649101413     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M807003200     Document Type: Article

References (78)

1. Beinert, H. (2000) J.Biol. Inorg. Chem. 5, 2-15
2. Frazzon, J., and Dean, D. R. (2003) Curr. Opin. Chem. Biol. 7,166-173
3. Zheng, L., Cash, V. L., Flint, D. H., and Dean, D. R. (1998) J.Biol. Chem. 273, 13264-13272
4. Takahashi, Y., and Tokumoto, U. (2002) J. Biol. Chem. 277, 28380 -28393
5. Layer, G., Ollagnier-de Choudens, S., Sanakis, Y., and Fontecave, M. (2006) J. Biol. Chem. 281, 16256-16263
6. Vivas, E., Skovran, E., and Downs, D. M. (2006) J. Bacteriol. 188, 1175-1179
7. Bou-Abdallah, F., Adinolfi, S., Pastore, A., Laue, T. M., and Dennis Chas-teen, N. (2004) J. Mol. Biol. 341, 605-615
8. Cui, Q., Thorgersen, M. P., Westler, W. M., Markley, J. L., and Downs, D. M. (2006) Proteins Struct. Funct. Bioinformat. 62, 578-586
9. Gralnick, J. A., and Downs, D. M. (2003) J.Biol. Chem. 278, 20708-20715
10. Loiseau, L., Gerez, C., Bekker, M., Ollagnier-de Choudens, S., Py, B., Sanakis, Y., Teixeira de Mattos, J., Fontecave, M., and Barras, F. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 13626-13631
11. Bandyopadhyay, S., Naik, S. G., O'Carroll, I. P., Huynh, B. H., Dean, D. R., Johnson, M. K., and Dos Santos, P. C. (2008) J. Biol. Chem. 283, 14092-14099
12. Angelini, S., Gerez, C., Ollagnier-de Choudens, S., Sanakis, Y., Fontecave, M., Barras, F., and Py, B. (2008) J.Biol. Chem. 283, 14084-14091
13. Jin, Z., Heinnickel, M., Krebs, C., Shen, G., Golbeck, J. H., and Bryant, D. A. (2008) J. Biol. Chem. 283, 28426-28435
14. Justino, M. C., Almeida, C. C., Goncalves, V. L., Teixeira, M., and Saraiva, L. M. (2006) FEMS Microbiol. Lett. 257, 278-284
15. Justino, M. C., Almeida, C. C., Teixeira, M., and Saraiva, L. M. (2007) J. Biol. Chem. 282, 10352-10359
16. Loiseau, L., Ollagnier-de Choudens, S., Lascoux, D., Forest, E., Fontecave, M., and Barras, F. (2005) J. Biol. Chem. 280, 26760-26769
17. Skovran, E., and Downs, D. M. (2003) J. Bacteriol. 185, 98-106
18. Petersen, L., and Downs, D. M. (1996) J. Bacteriol. 178, 5676-5682
19. Koo, M. S., Lee, J. H., Rah, S. Y., Yeo, W. S., Lee, J. W., Lee, K. L., Koh, Y. S., Kang, S. O., and Roe, J. H. (2003) EMBO J. 22, 2614-2622
20. Beck, B. J., Connolly, L. E., De Las Penas, A., and Downs, D. M. (1997) J Bacteriol. 179, 6504-6508
21. Beck, B. J., and Downs, D. M. (1998) J. Bacteriol. 180, 885- 891
22. Gralnick, J., Webb, E., Beck, B., and Downs, D. (2000) J. Bacteriol. 182, 5180-5187
23. Skovran, E., Lauhon, C. T., and Downs, D. M. (2004) J. Bacteriol. 186, 7626-7634
24. Igarashi, R. Y., and Seefeldt, L. C. (2003) Crit. Rev. Biochem. Mol. Biol. 38, 351-384
25. Lutkenhaus, J., and Sundaramoorthy, M. (2003) Mol. Microbiol. 48, 295-303
26. Leonard, T. A., Butler, P. J., and Lowe, J. (2005) EMBO J. 24, 270-282
27. Friedman, S. A., and Austin, S. J. (1988) Plasmid 19, 103-112
28. Koonin, E. V. (1993) J. Mol. Biol. 229, 1165-1174
29. Lezhneva, L., Amann, K., and Meurer, J. (2004) Plant J. 37, 174-185
30. Stockel, J., and Oelmuller, R. (2004) J.Biol. Chem. 279, 10243-10251
31. Roy, A., Solodovnikova, N., Nicholson, T., Antholine, W., and Walden, W. E. (2003) EMBO J. 22, 4826-4835
32. Hausmann, A., Aguilar Netz, D. J., Balk, J., Pierik, A. J., Muhlenhoff, U., and Lill, R. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 3266-3271
33. Bych, K., Kerscher, S., Netz, D. J., Pierik, A. J., Zwicker, K., Huynen, M. A., Lill, R., Brandt, U., and Balk, J. (2008) EMBO J. 27, 1736 -1746
34. Boyd, J. M., Pierik, A. J., Netz, D. J., Lill, R., and Downs, D. M. (2008) Biochemistry 47, 8195-8202
35. Boyd, J. M., Lewis, J. A., Escalante-Semerena, J. C., and Downs, D. M. (2008) J. Bacteriol. 190, 4596-4602
36. Raulfs, E. C., O'Carroll, I. P., Dos Santos, P. C., Unciuleac, M. C., and Dean, D. R. (2008) Proc. Natl. Acad. Sci. U. S. A. 105, 8591-8596
37. Lewis, J. A., Horswill, A. R., Schwem, B. E., and Escalante-Semerena, J. C. (2004) J. Bacteriol. 186, 1629-1637
38. Gross, S. R., Burns, R. O., and Umbarger, H. E. (1963) Biochemistry 2, 1046-1052
39. Balk, J., Pierik, A. J., Netz, D. J., Muhlenhoff, U., and Lill, R. (2004) EMBO J. 23, 2105-2115
40. Chan, K. M., Delfert, D., and Junger, K. D. (1986) Anal. Biochem. 157, 375-380
41. Kreuzer, K. N., and Jongeneel, C. V. (1983) Methods Enzymol. 100, 144-160
42. Bates, P. A., Kelley, L. A., MacCallum, R. M., and Sternberg, M. J. (2001) Proteins 5, S39 -S46
43. Bates, P. A., and Sternberg, M. J. (1999) Proteins 3, S47-S54
44. Contreras-Moreira, B., and Bates, P. A. (2002) Bioinformatics (Oxf.) 18, 1141-1142
45. Holmgren, A. (1985) Annu. Rev. Biochem. 54, 237-271
46. Enos-Berlage, J. L., and Downs, D. M. (1999) J. Bacteriol. 181, 841-848
47. Leonardi, R., Fairhurst, S. A., Kriek, M., Lowe, D. J., and Roach, P. L. (2003) FEBS Lett. 539, 95-99
48. Martinez-Gomez, N. C., Robers, M., and Downs, D. M. (2004) J. Biol. Chem. 279, 40505-40510
49. Lewis, J. A., and Escalante-Semerena, J. C. (2006) J. Bacteriol. 188, 5479-5486
50. Lewis, J. A., and Escalante-Semerena, J. C. (2007) Biochemistry 46, 9107-9115
51. Netz, D. J., Pierik, A. J., Stumpfig, M., Muhlenhoff, U., and Lill, R. (2007) Nat. Chem. Biol. 3, 278-286
52. Segel, I. H. (1975) Enzyme Kinetics, John Wiley & Sons, Inc., New York 53. Karkaria, C. E., Chen, C. M., and Rosen, B. P. (1990) J.Biol. Chem. 265, 7832-7836
53. Seefeldt, L. C., Morgan, T. V., Dean, D. R., and Mortenson, L. E. (1992) J. Biol. Chem. 267, 6680-6688
54. Tian, G. C., Yan, H. G., Jiang, R. T., Kishi, F., Nakazawa, A., and Tsai, M. D. (1990) Biochemistry 29, 4296-4304
55. Reinstein, J., Schlichting, I., and Wittinghofer, A. (1990) Biochemistry29, 7451-7459
56. Sigal, I. S., Gibbs, J. B., D'Alonzo, J. S., Temeles, G. L., Wolanski, B. S., Socher, S. H., and Scolnick, E. M. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 952-956
57. Seefeldt, L. C., and Mortenson, L. E. (1993) Protein Sci. 2, 93-102 59. Zhou, H., Schulze, R., Cox, S., Saez, C., Hu, Z., and Lutkenhaus, J. (2005) J. Bacteriol. 187, 629-638
58. Seeley, T. W., and Grossman, L. (1989) Proc. Natl. Acad. Sci. U. S.A. 86, 6577-6581
59. Parsonage, D., Al-Shawi, M. K., and Senior, A. E. (1988) J.Biol. Chem. 263, 4740-4744
60. Ryle, M. J., and Seefeldt, L. C. (1996) Biochemistry 35, 4766-4775
61. Ryle, M. J., Lanzilotta, W. N., Mortenson, L. E., Watt, G. D., and Seefeldt, L. C. (1995) J.Biol. Chem. 270, 13112-13117
62. Agar, J. N., Krebs, C., Frazzon, J., Huynh, B. H., Dean, D. R., and Johnson, M. K. (2000) Biochemistry 39, 7856 -7862
63. Smith, A. D., Jameson, G. N., Dos Santos, P. C., Agar, J. N., Naik, S., Krebs, C., Frazzon, J., Dean, D. R., Huynh, B. H., and Johnson, M. K. (2005) Biochemistry 44, 12955-12969
64. Shimomura, Y., Wada, K., Fukuyama, K., and Takahashi, Y. (2008) J. Mol. Biol. 383, 133-143
65. Shimomura, Y., Kamikubo, H., Nishi, Y., Masako, T., Kataoka, M., Koba- yashi, Y., Fukuyama, K., and Takahashi, Y. (2007) J. Biochem. (Tokyo) 142, 577-586
66. Johnson, D. C., Unciuleac, M. C., and Dean, D. R. (2006) J. Bacteriol. 188, 7551-7561
67. Foster, M., Mansy, S., Hwang, J., Penner-Hahn, J., Surerus, K. K., and Cowan, J. A. (2000) J.Am. Chem. Soc. 122, 6805-6806
68. Vitale, G., Fabre, E., and Hurt, E. C. (1996) Gene (Amst.) 178, 97-106
69. Dos Santos, P. C., Smith, A. D., Frazzon, J., Cash, V. L., Johnson, M. K., and Dean, D. R. (2004) J. Biol. Chem. 279, 19705-19711
70. Kaut, A., Lange, H., Diekert, K., Kispal, G., and Lill, R. (2000) J.Biol. Chem. 275, 15955-15961
71. Lu, J., Yang, J., Tan, G., and Ding, H. (2008) Biochem. J. 409, 535-543
72. Antonkine, M. L., Maes, E. M., Czernuszewicz, R. S., Breitenstein, C., Bill, E., Falzone, C. J., Balasubramanian, R., Lubner, C., Bryant, D. A., and Gol-beck, J. H. (2007) Biochim. Biophys. Acta 1767, 712-724
73. Gibney, B. R., Mulholland, S. E., Rabanal, F., and Dutton, P. L. (1996) Proc. Natl. Acad. Sci. U. S.A. 93,15041-15046
74. Mulholland, S. E., Gibney, B. R., Rabanal, F., and Dutton, P. L. (1998) J.Am. Chem. Soc. 120, 10296-10302
75. Gralnick, J., and Downs, D. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 8030-8035
76. Way, J. C., Davis, M. A., Morisato, D., Roberts, D. E., and Kleckner, N. (1984) Gene (Amst.) 32, 369-379
77. Neidhardt, F. C., Ingraham, J. L., and Schaechter, M. (1990) Physiology of the Bacterial Cell, pp. 198-199, Sinauer Associates, Inc., Sunderland, MA
78. Martinez-Gomez, N. C., and Downs, D. M. (2008) ThiC is an [Fe-S] Cluster protein that requires AdoMet to generate the 4-amino-5-hydroxymethyl-2- methylpyrimidine moiety in thiamin synthesis. Biochemistry 47, 9054-9056