Corrigendum to: "Stochasticity in single gene expression with both intrinsic noise and fluctuation in kinetic parameters" [J. Theor. Biol. 256 (2009) 485-492] (DOI:10.1016/j.jtbi.2008.10.028);Stochasticity in single gene expression with both intrinsic noise and fluctuation in kinetic parameters

Journal of Theoretical Biology

Volumn 256, Issue 4, 2009, Pages 485-492

  Lei, Jinzhi ^a  

^a TSINGHUA UNIVERSITY   (China)

Author keywords

Chemical Langevin equation; Extrinsic noise; Gene expression; Intrinsic noise; Stochasticity

Indexed keywords

GENE EXPRESSION; KINETICS; PROTEIN; RNA; STOCHASTICITY;

EID: 58549120549     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2009.09.033     Document Type: Erratum

References (32)

1. Bar-Even A., Paulsson J., Maheshri N., Carmi M., O'Shea E., Pilpel Y., and Barkai N. Noise in protein expression scales with natural protein abundance. Nat. Genet. 38 (2006) 636-643
2. Blake W.J., Kærn M., Cantor C.R., and Collins J.J. Noise in eukaryotic gene expression. Nature 422 (2003) 633-637
3. Elowitz M.B., Levine A.J., Siggia E.D., and Swain P.S. Stochastic gene expression in a single cell. Science 297 (2002) 1183-1186
4. Gardiner C.W. Handbook of Stochastic Methods for Physics, Chemistry and the Natural Sciences (1983), Springer, New York
5. Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 (1977) 2340-2361
6. Gillespie D.T. The chemical Langevin equation. J. Chem. Phys. 113 (2000) 297-306
7. Gillespie D.T. The chemical Langevin and Fokker-Planck equations for the reversible isomerization reaction. J. Phys. Chem. A 106 (2002) 5063-5071
8. Golding I., Paulsson J., Zawilski S.M., and Cox E.C. Real-time kinetics of gene activity in individual bacteria. Cell 123 (2005) 1025-1036
9. Hasty J., Pradines J., Dolnik M., and Collins J.J. Noise-based switches and amplifiers for gene expression. Proc. Natl. Acad. Sci. USA 97 (2000) 2075-2080
10. Kærn M., Elston T.C., Blake W.J., and Collins J.J. Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6 (2005) 451-464
11. Kaufmann B.B., Yang Q., Mettetal J.T., and van Oudenaarden A. Heritable stochastic switching revealed by single-cell genealogy. PLoS Biol. 5 (2007) 1973-1980
12. Keizer J. Statistical Thermodynamics of Nonequilibrium Process (1987), Springer, New York
13. Kepler T.B., and Elston T.C. Stochasticity in transcriptional regulation: origins, consequences and mathematical representations. Biophys. J. 81 (2001) 3116-3136
14. Kloeden P.E., and Platen E. Numerical Solution of Stochastic Differential Equations (1992), Springer, New York
15. Ozbudak E.M., Thattai M., Kurtser I., Grossman A.D., and van Oudenaarden A. Regulation of noise in the expression of a single gene. Nat. Genet. 31 (2002) 69-73
16. Paulsson J. Summing up the noise in gene network. Nature 427 (2004) 415-418
17. Paulsson J. Models of stochastic gene expression. Phys. Life Rev. 2 (2005) 157-175
18. Pedraza J.M., and van Oudenaarden A. Noise propagation in gene networks. Science 307 (2005) 1965-1969
19. Pedraza J., and Paulsson J. Effects of molecular memory and bursting on fluctuations in gene expression. Science 319 (2008) 339-343
20. Raser J.M., and O'Shea E.K. Control of stochasticity in eukaryotic gene expression. Science 304 (2004) 1811-1814
21. Rosenfeld N., Young J.W., Alon U., Swain P.S., and Elowitz M.B. Gene regulation at the single-cell level. Science 307 (2005) 1962-1965
22. Scott M., Ingalls B., and Kærn M. Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks. Chaos 16 (2006) 026107
23. Shahrezaei V., Ollivier J., and Swain P.S. Colored extrinsic fluctuations and stochastic gene expression. Mol. Syst. Biol. 4 (2008) 1-9
24. Sigal A., Milo R., Cohen A., Geva-Zatorsky N., Klein Y., Liron Y., Rosenfeld N., Danon T., Perzov N., and Alon N. Variability and memory of protein levels in human cells. Nature 444 (2006) 643-646
25. Spudich J.L., and Koshland Jr. D.E. Non-genetic individuality: chance in the single cell. Nature 262 (1976) 467-471
26. Swain P.S., Elowitz M.B., and Siggia E.D. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc. Natl. Acad. Sci. USA 99 (2002) 12795-12800
27. Tao Y. Intrinsic and external noise in an auto-regulatory generic network. J. Theor. Biol. 229 (2004) 147-156
28. Thattai M., and van Oudenaarden A. Intrinsic noise in gene regulatory networks. Proc. Natl. Acad. Sci. USA 98 (2001) 8614-8619
29. Thattai M., and van Oudenaarden A. Attenuation of noise in ultrasensitive signaling cascades. Biophys. J. 82 (2002) 2943-2950
30. Tian T., and Burrage K. Stochastic models for regulatory networks of the genetic toggle switch. Proc. Natl. Acad. Sci. USA 103 (2006) 8372-8377
31. van Kampen N.G. Stochastic Process in Physics and Chemistry (1992), North-Holland, Amsterdam
32. Wang Z., Hou Z., and Xin H. Internal noise stochastic resonance of synthetic gene network. Chem. Phys. Lett. 401 (2005) 307-311