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Volumn 447, Issue , 2008, Pages 31-45

Chapter 2 Analyzing the Decay of Stable RNAs in E. coli

Author keywords

[No Author keywords available]

Indexed keywords

POLYADENYLIC ACID; RIBOSOME RNA; RNA; TRANSFER RNA;

EID: 58249088740     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)02202-7     Document Type: Review
Times cited : (8)

References (29)
  • 1
    • 0037077311 scopus 로고    scopus 로고
    • Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
    • Cheng Z.F., and Deutscher M.P. Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J. Biol. Chem. 277 (2002) 21624-21629
    • (2002) J. Biol. Chem. , vol.277 , pp. 21624-21629
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 2
    • 0038652098 scopus 로고    scopus 로고
    • Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R
    • Cheng Z.F., and Deutscher M.P. Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc. Natl. Acad. Sci. USA 100 (2003) 6388-6393
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6388-6393
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 3
    • 12344330602 scopus 로고    scopus 로고
    • An important role for RNase R in mRNA decay
    • Cheng Z.F., and Deutscher M.P. An important role for RNase R in mRNA decay. Mol. Cell. 17 (2005) 313-318
    • (2005) Mol. Cell. , vol.17 , pp. 313-318
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 4
    • 0028923019 scopus 로고
    • Surprises at the 3′-end of prokaryotic RNA
    • Cohen S.N. Surprises at the 3′-end of prokaryotic RNA. Cell 80 (1995) 829-832
    • (1995) Cell , vol.80 , pp. 829-832
    • Cohen, S.N.1
  • 5
    • 0242496945 scopus 로고    scopus 로고
    • Degradation of stable RNA in bacteria
    • Deutscher M.P. Degradation of stable RNA in bacteria. J. Biol. Chem. 278 (2003) 45041-45044
    • (2003) J. Biol. Chem. , vol.278 , pp. 45041-45044
    • Deutscher, M.P.1
  • 6
    • 32644435694 scopus 로고    scopus 로고
    • Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
    • Deutscher M.P. Degradation of RNA in bacteria: Comparison of mRNA and stable RNA. Nucleic Acids Res. 34 (2006) 659-666
    • (2006) Nucleic Acids Res. , vol.34 , pp. 659-666
    • Deutscher, M.P.1
  • 7
    • 0018077876 scopus 로고
    • Preparation of synthetic tRNA precursors with tRNA nucleotidyltransferase
    • Deutscher M.P., and Ghosh R.K. Preparation of synthetic tRNA precursors with tRNA nucleotidyltransferase. Nucleic Acids Res. 5 (1978) 3821-3829
    • (1978) Nucleic Acids Res. , vol.5 , pp. 3821-3829
    • Deutscher, M.P.1    Ghosh, R.K.2
  • 8
    • 0016205087 scopus 로고
    • Isolation and partial characterization of Escherichia coli mutants with low levels of transfer ribonucleic acid nucleotidyltransferase
    • Deutscher M.P., and Hilderman R.H. Isolation and partial characterization of Escherichia coli mutants with low levels of transfer ribonucleic acid nucleotidyltransferase. J. Bacteriol. 118 (1974) 621-627
    • (1974) J. Bacteriol. , vol.118 , pp. 621-627
    • Deutscher, M.P.1    Hilderman, R.H.2
  • 9
    • 0017410439 scopus 로고
    • Multiple pathways for primary processing of ribosomal RNA in Escherichia coli
    • Gegenheimer P., Watson N., and Apirion D. Multiple pathways for primary processing of ribosomal RNA in Escherichia coli. J. Biol. Chem. 252 (1977) 3064-3073
    • (1977) J. Biol. Chem. , vol.252 , pp. 3064-3073
    • Gegenheimer, P.1    Watson, N.2    Apirion, D.3
  • 13
    • 0016861437 scopus 로고
    • Decay of ribosomal ribonucleic acid in Escherichia coli cells starved for various nutrients
    • Kaplan R., and Apirion D. Decay of ribosomal ribonucleic acid in Escherichia coli cells starved for various nutrients. J. Biol. Chem. 250 (1975) 3174-3178
    • (1975) J. Biol. Chem. , vol.250 , pp. 3174-3178
    • Kaplan, R.1    Apirion, D.2
  • 14
    • 1242342956 scopus 로고    scopus 로고
    • The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
    • Khemici V., and Carpousis A.J. The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol. Microbiol. 51 (2004) 777-790
    • (2004) Mol. Microbiol. , vol.51 , pp. 777-790
    • Khemici, V.1    Carpousis, A.J.2
  • 15
    • 0036719292 scopus 로고    scopus 로고
    • mRNA decay in Escherichia coli comes of age
    • Kushner S.R. mRNA decay in Escherichia coli comes of age. J. Bacteriol. 184 (2002) 4658-4665
    • (2002) J. Bacteriol. , vol.184 , pp. 4658-4665
    • Kushner, S.R.1
  • 16
    • 35548982581 scopus 로고    scopus 로고
    • Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation
    • Lalonde M.S., Zuo Y., Zhang J., Gong X., Wu S., Malhotra A., and Li Z. Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation. RNA 13 (2007) 1957-1968
    • (2007) RNA , vol.13 , pp. 1957-1968
    • Lalonde, M.S.1    Zuo, Y.2    Zhang, J.3    Gong, X.4    Wu, S.5    Malhotra, A.6    Li, Z.7
  • 17
    • 0031230045 scopus 로고    scopus 로고
    • The position of site-directed cleavage of RNA using RNase H and 29-O-methyl oligonucleotides is dependent on the enzyme source
    • Lapham J., Yu Y.T., Shu M.D., Steitz J.A., and Crothers D.M. The position of site-directed cleavage of RNA using RNase H and 29-O-methyl oligonucleotides is dependent on the enzyme source. RNA 3 (1997) 950-951
    • (1997) RNA , vol.3 , pp. 950-951
    • Lapham, J.1    Yu, Y.T.2    Shu, M.D.3    Steitz, J.A.4    Crothers, D.M.5
  • 18
    • 0028100687 scopus 로고
    • The role of individual exoribonucleases in processing at the 3′-end of Escherichia coli tRNA precursors
    • Li Z., and Deutscher M.P. The role of individual exoribonucleases in processing at the 3′-end of Escherichia coli tRNA precursors. J. Biol. Chem. 269 (1994) 6064-6071
    • (1994) J. Biol. Chem. , vol.269 , pp. 6064-6071
    • Li, Z.1    Deutscher, M.P.2
  • 19
    • 0029151159 scopus 로고
    • The tRNA processing enzyme RNase T is essential for maturation of 5S RNA
    • Li Z., and Deutscher M.P. The tRNA processing enzyme RNase T is essential for maturation of 5S RNA. Proc. Natl. Acad. Sci. USA 92 (1995) 6883-6886
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 6883-6886
    • Li, Z.1    Deutscher, M.P.2
  • 20
    • 0030576503 scopus 로고    scopus 로고
    • Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo
    • Li Z., and Deutscher M.P. Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo. Cell 86 (1996) 503-512
    • (1996) Cell , vol.86 , pp. 503-512
    • Li, Z.1    Deutscher, M.P.2
  • 21
    • 33749537449 scopus 로고    scopus 로고
    • Exoribonucleases and endoribonucleases
    • Curtiss III R. (Ed), ASM Press, Washington, DC Chapter 4.6.3, ([online])
    • Li Z., and Deutscher M.P. Exoribonucleases and endoribonucleases. In: Curtiss III R. (Ed). EcoSal-Escherichia coli and Salmonella: Cellular and Molecular Biology (2004), ASM Press, Washington, DC. http://www.ecosal.org Chapter 4.6.3, ([online])
    • (2004) EcoSal-Escherichia coli and Salmonella: Cellular and Molecular Biology
    • Li, Z.1    Deutscher, M.P.2
  • 22
    • 0032539857 scopus 로고    scopus 로고
    • 3′-Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
    • Li Z., Pandit S., and Deutscher M.P. 3′-Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl. Acad. Sci. USA 95 (1998) 2856-2861
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 23
    • 0032514754 scopus 로고    scopus 로고
    • Polyadenylation of stable RNA precursors in vivo
    • Li Z., Pandit S., and Deutscher M.P. Polyadenylation of stable RNA precursors in vivo. Proc. Natl. Acad. Sci. USA 95 (1998) 12158-12162
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12158-12162
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 24
    • 0032951885 scopus 로고    scopus 로고
    • Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T
    • Li Z., Pandit S., and Deutscher M.P. Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T. RNA 5 (1999) 139-146
    • (1999) RNA , vol.5 , pp. 139-146
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 25
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 5′-maturation of 16S ribosomal RNA
    • Li Z., Pandit S., and Deutscher M.P. RNase G (CafA protein) and RNase E are both required for the 5′-maturation of 16S ribosomal RNA. EMBO J. 18 (1999) 2878-2885
    • (1999) EMBO J. , vol.18 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 26
    • 0036500552 scopus 로고    scopus 로고
    • RNA quality control: Degradation of defective transfer RNA
    • Li Z., Reimers S., Pandit S., and Deutscher M.P. RNA quality control: Degradation of defective transfer RNA. EMBO J. 21 (2002) 1132-1138
    • (2002) EMBO J. , vol.21 , pp. 1132-1138
    • Li, Z.1    Reimers, S.2    Pandit, S.3    Deutscher, M.P.4
  • 27
    • 0025800149 scopus 로고
    • The rifampicin-inducible genes srnB from F and pnd from R483 are regulated by antisense RNAs and mediate plasmid maintenance by killing of plasmid-free segregants
    • Nielsen A.K., Thorsted P., Thisted T., Wagner E.G., and Gerdes K. The rifampicin-inducible genes srnB from F and pnd from R483 are regulated by antisense RNAs and mediate plasmid maintenance by killing of plasmid-free segregants. Mol. Microbiol. 5 (1991) 1961-1973
    • (1991) Mol. Microbiol. , vol.5 , pp. 1961-1973
    • Nielsen, A.K.1    Thorsted, P.2    Thisted, T.3    Wagner, E.G.4    Gerdes, K.5
  • 29
    • 33749578566 scopus 로고    scopus 로고
    • Substrate recognition and catalysis by the exoribonuclease RNase R
    • Vincent H.A., and Deutscher M.P. Substrate recognition and catalysis by the exoribonuclease RNase R. J. Biol. Chem. 281 (2006) 29769-29775
    • (2006) J. Biol. Chem. , vol.281 , pp. 29769-29775
    • Vincent, H.A.1    Deutscher, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.