메뉴 건너뛰기




Volumn 20, Issue 2, 2009, Pages 341-346

High resolution linkage and linkage disequilibrium analyses of chromosome 1p36 SNPs identify new positional candidate genes for low bone mineral density

Author keywords

Association; Bone mineral density; Chromosome 1p36; Linkage; Osteoporosis

Indexed keywords

ARTICLE; BONE DENSITY; CAUCASIAN; CCDC27 GENE; CHROMOSOME 1P; CHROMOSOME 1P36; CLINICAL ARTICLE; COHORT ANALYSIS; CONTROLLED STUDY; FAMILY; FEMUR NECK; G1P2 GENE; GENE; GENE LINKAGE DISEQUILIBRIUM; GENETIC RISK; GENETICS; GENOME; GENOTYPE; GREATER TROCHANTER; HUMAN; LINKAGE ANALYSIS; LUMBAR SPINE; MULTIVARIATE ANALYSIS; OSTEOPOROSIS; PEDIGREE; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RERE GENE; RISK FACTOR; SAMPLE; SCORING SYSTEM; SINGLE NUCLEOTIDE POLYMORPHISM; SSU72 GENE; VARIANCE;

EID: 58149471982     PISSN: 0937941X     EISSN: 14332965     Source Type: Journal    
DOI: 10.1007/s00198-008-0668-1     Document Type: Article
Times cited : (16)

References (33)
  • 1
    • 34247579552 scopus 로고    scopus 로고
    • Genetics of osteoporosis
    • SH Ralston 2007 Genetics of osteoporosis Proc Nutr Soc 66 158 165
    • (2007) Proc Nutr Soc , vol.66 , pp. 158-165
    • Ralston, S.H.1
  • 2
    • 13144252230 scopus 로고    scopus 로고
    • A first-stage autosomal genome screen in extended pedigrees suggests genes predisposing to low bone mineral density are on chromosome 1p, 2p, and 4q
    • M Devoto K Shimoya J Caminis 1998 A first-stage autosomal genome screen in extended pedigrees suggests genes predisposing to low bone mineral density are on chromosome 1p, 2p, and 4q Eur J Hum Genet 6 151 157
    • (1998) Eur J Hum Genet , vol.6 , pp. 151-157
    • Devoto, M.1    Shimoya, K.2    Caminis, J.3
  • 3
    • 0035505057 scopus 로고    scopus 로고
    • Variance component linkage analysis indicates a QTL for femoral neck bone mineral density on chromosome 1p36
    • M Devoto C Specchia HH Li 2001 Variance component linkage analysis indicates a QTL for femoral neck bone mineral density on chromosome 1p36 Hum Mol Genet 10 2447 2452
    • (2001) Hum Mol Genet , vol.10 , pp. 2447-2452
    • Devoto, M.1    Specchia, C.2    Li, H.H.3
  • 4
    • 0037217529 scopus 로고    scopus 로고
    • Comparison of genome screens for two independent cohorts provides replication of suggestive linkage of bone mineral density to 3p21 and 1p36
    • SG Wilson PW Reed A Bansal 2003 Comparison of genome screens for two independent cohorts provides replication of suggestive linkage of bone mineral density to 3p21 and 1p36 Am J Hum Genet 72 144 155
    • (2003) Am J Hum Genet , vol.72 , pp. 144-155
    • Wilson, S.G.1    Reed, P.W.2    Bansal, A.3
  • 5
    • 0041765816 scopus 로고    scopus 로고
    • Suggestive linkage of 2p22-25 and 11q12-13 with low bone mineral density at the lumbar spine in the Irish population
    • F Wynne FJ Drummond M Daly 2003 Suggestive linkage of 2p22-25 and 11q12-13 with low bone mineral density at the lumbar spine in the Irish population Calcif Tissue Int 72 651 658
    • (2003) Calcif Tissue Int , vol.72 , pp. 651-658
    • Wynne, F.1    Drummond, F.J.2    Daly, M.3
  • 6
    • 1542286077 scopus 로고    scopus 로고
    • Genome screen for a combined bone phenotype using principal component analysis: The Framingham study
    • D Karasik LA Cupples MT Hannan 2004 Genome screen for a combined bone phenotype using principal component analysis: the Framingham study Bone 34 547 556
    • (2004) Bone , vol.34 , pp. 547-556
    • Karasik, D.1    Cupples, L.A.2    Hannan, M.T.3
  • 7
    • 33748069440 scopus 로고    scopus 로고
    • Quantitative trait loci for BMD identified by autosome-wide linkage scan to chromosomes 7q and 21q in men from the Amish Family Osteoporosis Study
    • EA Streeten DJ McBride TI Pollin 2006 Quantitative trait loci for BMD identified by autosome-wide linkage scan to chromosomes 7q and 21q in men from the Amish Family Osteoporosis Study J Bone Miner Res 21 1433 1442
    • (2006) J Bone Miner Res , vol.21 , pp. 1433-1442
    • Streeten, E.A.1    McBride, D.J.2    Pollin, T.I.3
  • 8
    • 33749247815 scopus 로고    scopus 로고
    • Genomic regions identified for BMD in a large sample including epistatic interactions and gender-specific effects
    • P Xiao H Shen YF Guo 2006 Genomic regions identified for BMD in a large sample including epistatic interactions and gender-specific effects J Bone Miner Res 21 1536 1544
    • (2006) J Bone Miner Res , vol.21 , pp. 1536-1544
    • Xiao, P.1    Shen, H.2    Guo, Y.F.3
  • 9
    • 33744990856 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide linkage studies for bone mineral density
    • YH Lee YH Rho SJ Choi 2006 Meta-analysis of genome-wide linkage studies for bone mineral density J Hum Genet 51 480 486
    • (2006) J Hum Genet , vol.51 , pp. 480-486
    • Lee, Y.H.1    Rho, Y.H.2    Choi, S.J.3
  • 10
    • 33846473055 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide scans provides evidence for sex- and site-specific regulation of bone mass
    • JP Ioannidis MY Ng PC Sham 2007 Meta-analysis of genome-wide scans provides evidence for sex- and site-specific regulation of bone mass J Bone Miner Res 22 173 183
    • (2007) J Bone Miner Res , vol.22 , pp. 173-183
    • Ioannidis, J.P.1    Ng, M.Y.2    Sham, P.C.3
  • 11
    • 20544465620 scopus 로고    scopus 로고
    • Univariate and bivariate variance component linkage analysis of a whole-genome scan for loci contributing to bone mineral density
    • M Devoto LD Spotila DL Stabley 2005 Univariate and bivariate variance component linkage analysis of a whole-genome scan for loci contributing to bone mineral density Eur J Hum Genet 13 781 788
    • (2005) Eur J Hum Genet , vol.13 , pp. 781-788
    • Devoto, M.1    Spotila, L.D.2    Stabley, D.L.3
  • 12
    • 0032231941 scopus 로고    scopus 로고
    • PedCheck: A program for identifying genotype incompatibilities in linkage analysis
    • JR O'Connell DE Weeks 1998 PedCheck: A program for identifying genotype incompatibilities in linkage analysis Am J Hum Genet 63 259 266
    • (1998) Am J Hum Genet , vol.63 , pp. 259-266
    • O'Connell, J.R.1    Weeks, D.E.2
  • 13
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • JC Barrett B Fry J Maller 2005 Haploview: analysis and visualization of LD and haplotype maps Bioinformatics 21 263 265
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3
  • 15
    • 0031966959 scopus 로고    scopus 로고
    • Multipoint quantitative trait linkage analysis in general pedigrees
    • L Almasy J Blangero 1998 Multipoint quantitative trait linkage analysis in general pedigrees Am J Hum Genet 62 1198 1211
    • (1998) Am J Hum Genet , vol.62 , pp. 1198-1211
    • Almasy, L.1    Blangero, J.2
  • 16
    • 0033909546 scopus 로고    scopus 로고
    • A general test of association for quantitative traits in nuclear families
    • GR Abecasis LR Cardon WO Cookson 2000 A general test of association for quantitative traits in nuclear families Am J Hum Genet 66 279 292
    • (2000) Am J Hum Genet , vol.66 , pp. 279-292
    • Abecasis, G.R.1    Cardon, L.R.2    Cookson, W.O.3
  • 17
    • 30344463185 scopus 로고    scopus 로고
    • The quantitative trait linkage disequilibrium test: A more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification
    • LM Havill TD Dyer DK Richardson 2005 The quantitative trait linkage disequilibrium test: a more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification BMC Genet 6 S91 95
    • (2005) BMC Genet , vol.6 , pp. 91-95
    • Havill, L.M.1    Dyer, T.D.2    Richardson, D.K.3
  • 18
    • 27244437783 scopus 로고    scopus 로고
    • Handling marker-marker linkage disequilibrium: Pedigree analysis with clustered markers
    • GR Abecasis JE Wigginton 2005 Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers Am J Hum Genet 77 754 767
    • (2005) Am J Hum Genet , vol.77 , pp. 754-767
    • Abecasis, G.R.1    Wigginton, J.E.2
  • 19
    • 0036338150 scopus 로고    scopus 로고
    • Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
    • GR Abecasis SS Cherny WO Cookson 2002 Merlin-rapid analysis of dense genetic maps using sparse gene flow trees Nat Genet 30 97 101
    • (2002) Nat Genet , vol.30 , pp. 97-101
    • Abecasis, G.R.1    Cherny, S.S.2    Cookson, W.O.3
  • 20
    • 3042548992 scopus 로고    scopus 로고
    • Whole-genome scan, in a complex disease, using 11,245 single-nucleotide polymorphisms: Comparison with microsatellites
    • S John N Shephard G Liu 2004 Whole-genome scan, in a complex disease, using 11,245 single-nucleotide polymorphisms: comparison with microsatellites Am J Hum Genet 75 54 64
    • (2004) Am J Hum Genet , vol.75 , pp. 54-64
    • John, S.1    Shephard, N.2    Liu, G.3
  • 21
    • 8844250042 scopus 로고    scopus 로고
    • Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis
    • Q Huang S Shete CI Amos 2004 Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis Am J Hum Genet 75 1106 1112
    • (2004) Am J Hum Genet , vol.75 , pp. 1106-1112
    • Huang, Q.1    Shete, S.2    Amos, C.I.3
  • 22
    • 23844506823 scopus 로고    scopus 로고
    • Linkage disequilibrium inflates type i error rates in multipoint linkage analysis when parental genotypes are missing
    • AL Boyles WK Scott ER Martin 2005 Linkage disequilibrium inflates type I error rates in multipoint linkage analysis when parental genotypes are missing Hum Hered 59 220 227
    • (2005) Hum Hered , vol.59 , pp. 220-227
    • Boyles, A.L.1    Scott, W.K.2    Martin, E.R.3
  • 23
    • 0031439473 scopus 로고    scopus 로고
    • Bivariate quantitative trait linkage analysis: Pleiotropy versus co-incident linkages
    • L Almasy TD Dyer J Blangero 1997 Bivariate quantitative trait linkage analysis: pleiotropy versus co-incident linkages Genet Epidemiol 14 953 958
    • (1997) Genet Epidemiol , vol.14 , pp. 953-958
    • Almasy, L.1    Dyer, T.D.2    Blangero, J.3
  • 24
    • 0037223851 scopus 로고    scopus 로고
    • Association of the -381T/C promoter variation of the brain natriuretic peptide gene with low bone-mineral density and rapid postmenopausal bone loss
    • M Kajita Y Ezura H Iwasaki 2003 Association of the -381T/C promoter variation of the brain natriuretic peptide gene with low bone-mineral density and rapid postmenopausal bone loss J Hum Genet 48 77 81
    • (2003) J Hum Genet , vol.48 , pp. 77-81
    • Kajita, M.1    Ezura, Y.2    Iwasaki, H.3
  • 25
    • 0041836220 scopus 로고    scopus 로고
    • Association analysis of bone mineral density and single nucleotide polymorphisms in two candidate genes on chromosome 1p36
    • LD Spotila H Rodriguez M Koch 2003 Association analysis of bone mineral density and single nucleotide polymorphisms in two candidate genes on chromosome 1p36 Calcif Tissue Int 73 140 146
    • (2003) Calcif Tissue Int , vol.73 , pp. 140-146
    • Spotila, L.D.1    Rodriguez, H.2    Koch, M.3
  • 26
    • 33744975547 scopus 로고    scopus 로고
    • Association of PLOD1 polymorphisms with bone mineral density in a population-based study of women from the UK
    • PN Tasker H Macdonald WD Fraser 2006 Association of PLOD1 polymorphisms with bone mineral density in a population-based study of women from the UK Osteoporos Int 17 1078 1085
    • (2006) Osteoporos Int , vol.17 , pp. 1078-1085
    • Tasker, P.N.1    MacDonald, H.2    Fraser, W.D.3
  • 27
    • 34248585741 scopus 로고    scopus 로고
    • Association of candidate gene polymorphisms with bone mineral density in community-dwelling Japanese women and men
    • Y Yamada F Ando H Shimokata 2007 Association of candidate gene polymorphisms with bone mineral density in community-dwelling Japanese women and men Int J Mol Med 19 791 801
    • (2007) Int J Mol Med , vol.19 , pp. 791-801
    • Yamada, Y.1    Ando, F.2    Shimokata, H.3
  • 28
    • 0034089081 scopus 로고    scopus 로고
    • Association of a polymorphism in the TNFR2 gene with low bone mineral density
    • LD Spotila H Rodriguez M Koch 2000 Association of a polymorphism in the TNFR2 gene with low bone mineral density J Bone Miner Res 15 1376 1383
    • (2000) J Bone Miner Res , vol.15 , pp. 1376-1383
    • Spotila, L.D.1    Rodriguez, H.2    Koch, M.3
  • 29
    • 0037106438 scopus 로고    scopus 로고
    • Linkage disequilibrium between polymorphisms in the human TNFRSF1B gene and their association with bone mass in perimenopausal women
    • OM Albagha PN Tasker FE McGuigan 2002 Linkage disequilibrium between polymorphisms in the human TNFRSF1B gene and their association with bone mass in perimenopausal women Hum Mol Genet 11 2289 2295
    • (2002) Hum Mol Genet , vol.11 , pp. 2289-2295
    • Albagha, O.M.1    Tasker, P.N.2    McGuigan, F.E.3
  • 30
    • 8644227628 scopus 로고    scopus 로고
    • Association between TNFRSF1B polymorphisms and bone mineral density, bone loss and fracture
    • PN Tasker OM Albagha CB Masson 2004 Association between TNFRSF1B polymorphisms and bone mineral density, bone loss and fracture Osteoporos Int 15 903 908
    • (2004) Osteoporos Int , vol.15 , pp. 903-908
    • Tasker, P.N.1    Albagha, O.M.2    Masson, C.B.3
  • 31
    • 33646482000 scopus 로고    scopus 로고
    • CA repeat polymorphism of the TNFR2 gene is not associated with bone mineral density in two independent Caucasian populations
    • QY Huang H Shen HY Deng 2006 CA repeat polymorphism of the TNFR2 gene is not associated with bone mineral density in two independent Caucasian populations J Bone Miner Metab 24 132 137
    • (2006) J Bone Miner Metab , vol.24 , pp. 132-137
    • Huang, Q.Y.1    Shen, H.2    Deng, H.Y.3
  • 32
    • 10344253804 scopus 로고    scopus 로고
    • A deletion polymorphism in the RIZ gene, a female sex steroid hormone receptor coactivator, exhibits decreased response to estrogen in vitro and associates with low bone mineral density in young Swedish women
    • E Grundberg T Carling H Brändström 2004 A deletion polymorphism in the RIZ gene, a female sex steroid hormone receptor coactivator, exhibits decreased response to estrogen in vitro and associates with low bone mineral density in young Swedish women J Clin Endocrinol Metab 89 6173 6178
    • (2004) J Clin Endocrinol Metab , vol.89 , pp. 6173-6178
    • Grundberg, E.1    Carling, T.2    Brändström, H.3
  • 33
    • 37849047819 scopus 로고    scopus 로고
    • The RIZ Pro704 insertion-deletion polymorphism, bone mineral density and fracture risk: The Rotterdam study
    • L Stolk JB van Meurs PP Arp 2008 The RIZ Pro704 insertion-deletion polymorphism, bone mineral density and fracture risk: The Rotterdam study Bone 42 286 293
    • (2008) Bone , vol.42 , pp. 286-293
    • Stolk, L.1    Van Meurs, J.B.2    Arp, P.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.