High genetic divergence characterizes populations of the endemic plant Lithophragma maximum (Saxifragaceae) on San Clemente Island

Conservation Genetics

Volumn 10, Issue 1, 2009, Pages 115-126

  Furches, M Steven ^a   Wallace, L E ^b   Helenurm, K ^c  

^a UNIVERSITY OF TENNESSEE   (United States)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

^c UNIVERSITY OF SOUTH DAKOTA   (United States)

Author keywords

Channel Islands; Conservation genetics; Endemic species; Lithophragma; Microsatellites

Indexed keywords

BAYESIAN ANALYSIS; CANYON; CONSERVATION GENETICS; DIVERGENCE; ENDEMIC SPECIES; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; HERB; INVASIVE SPECIES; ISOLATED POPULATION; POPULATION BOTTLENECK; POPULATION STRUCTURE; SPECIES OCCURRENCE;

CALIFORNIA; CHANNEL ISLANDS [CALIFORNIA]; NORTH AMERICA; SAN CLEMENTE ISLAND; UNITED STATES;

LITHOPHRAGMA; LITHOPHRAGMA MAXIMUM; SAXIFRAGACEAE;

EID: 58149458138     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-008-9531-3     Document Type: Article

References (60)

1. R Bacigalupi 1963 A new species of Lithophragma from San Clemente Island, California Aliso 5 349 350
2. Barrett SCH, Husband BC (1990) Genetics of plant migration and colonization. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding and genetic resources. Sinauer Associates, MA, pp 254-277
3. Beauchamp RM, Ferguson HL (1980) Endangered plant species status report for Lithophragma maximum (Bacigalupi). U.S. Fish and Wildlife Service, Sacramento Endangered Species Office, Sacramento, pp 1-2
4. JM Brown JH Leebens-Mack JN Thompson O Pellmyr RG Harrison 1997 Phylogeography and host association in a pollinating seed parasite Greya politella (Lepidoptera: Prodoxidae) Mol Ecol 6 215 224
5. Carroll MC, Laughrin LL, Broomfield AC (1993) Fire on the California Islands: Does it play a role in chaparral and closed cone pine forest habitats? In: Hochberg FG (ed) Third California Islands Symposium: recent advances in research on California Islands. Santa Barbara Museum of Natural History, Santa Barbara, pp 73-88
6. RG Collevatti D Grattapaglia JD Hay 2001 Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci Mol Ecol 10 349 356
7. J Corander P Marttinen 2006 Bayesian identification of admixture events using multi-locus molecular markers Mol Ecol 15 2833 2843
8. J Corander P Waldmann MJ Sillanpää 2003 Bayesian analysis of genetic differentiation between populations Genetics 163 367 374
9. J Corander P Waldmann P Marttinen MJ Sillanpää 2004 BAPS 2: enhanced possibilities for the analysis of genetic population structure Bioinformatics 20 2363 2369
10. JM Cornuet G Luikart 1996 Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data Genetics 144 2001 2014
11. D Couvet 2002 Deleterious effects of restricted gene flow in fragmented populations Conserv Biol 16 369 376
12. Davis S, Heywood V, Hamilton A (1994) Centres of plant diversity: a guide and strategy for their conservation, vol 1. Europe, Africa, South West Asia and the Middle East WWF and IUCN, Cambridge
13. Davis S, Heywood V, Hamilton A (1995) Centres of plant diversity: a guide and strategy for their conservation, vol 2. Asia, Australasia and the Pacific WWF and IUCN, Cambridge
14. A Di Rienzo AC Peterson JC Garza AM Valdes M Slatkin NB Freimer 1994 Mutational processes of simple sequence repeat loci in human populations Proc Natl Acad Sci USA 91 3166 3170
15. SC Dodd K Helenurm 2002 Genetic diversity in Delphinium variegatum (Ranunculaceae): a comparison of two insular endemic subspecies and their widespread mainland relative Am J Bot 89 613 622
16. NC Ellstrand DR Elam 1993 Population genetic consequences of small population size: implications for conservation Annu Rev Ecol Syst 23 237 261
17. Elvander PE (1993) Lithophragma. In: Hickman JC (ed) The Jepson manual: higher plants of California. University of California Press, Berkeley, pp 1005-1006
18. G Evanno S Regnaut J Goudet 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study Mol Ecol 14 2611 2620
19. R Frankham 1997 Do island populations have less genetic variation than mainland populations? Heredity 78 311 327
20. R Frankham 1998 Inbreeding and extinction: island populations Conserv Biol 12 665 675
21. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge, pp 45-70
22. L-Z Gao 2005 Microsatellite variation within and among populations of Oryza officinalis (Poaceae), an endangered wild rice from China Mol Ecol 14 4287 4297
23. JC Garza EG Williamson 2001 Detection of reduction in population size using data from microsatellite loci Mol Ecol 10 205 318
24. M Gaudeul Y Naciri-Graven P Gauthier F Pompanon 2002 Isolation and characterization of microsatellites in a perennial Apiaceae, Eryngium alpinum L Mol Ecol Notes 2 107 109
25. Goudet J (2001) FSTAT, A program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/ softwares/fstat.html
26. K Helenurm 2001 High levels of genetic polymorphism in the insular endemic herb Jepsonia malvifolia J Hered 92 427 432
27. K Helenurm 2003 Genetic diversity in the rare insular endemic Sibara filifolia (Brassicaceae) Madrono 50 181 186
28. K Helenurm SS Hall 2005 Dissimilar patterns of genetic variation in two insular endemic plants sharing species characteristics, distribution, habitat, and ecological history Conserv Genet 6 341 353
29. K Helenurm R West SJ Burckhalter 2005 Allozyme variation in the endangered insular endemic Castilleja grisea Ann Bot-London 95 1221 1227
30. Holsinger KE, Gottlieb LD (1991) Conservation of rare and endangered plants: principles and concepts. In: Holsinger KE, Falk DE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 195-208
31. Huenneke LF (1991) Ecological implications of genetic variation in plant populations. In: Holsinger KE, Falk DE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 31-44
32. Junak S, Ayers T, Scott R, Wilken D, Young D (1995) A flora of Santa Cruz Island. Santa Barbara Botanic Garden, Santa Barbara
33. Kellogg EM, Kellogg JL (1994) San Clemente Island vegetation condition and trend and the elements of ecological restoration. Tierra Data Systems, Reedley
34. S Kikuchi Y Isagi 2002 Microsatellite genetic variation in small and isolated populations of Magnolia sieboldii ssp. japonica Heredity 88 313 321
35. MD Loveless JL Hamrick 1984 Ecological determinants of genetic structure in plant populations Annu Rev Ecol Syst 15 65 95
36. G Luikart JM Cornuet 1998 Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data Conserv Biol 12 228 237
37. T Maruyama PA Fuerst 1985 Population bottlenecks and non-equilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck Genetics 111 675 689
38. Miller MP (1997) Tools for Population Genetic Analyses (TFPGA). Version 1.3: Department of Biological Sciences, Northern Arizona University
39. A Moody 2000 Analysis of plant species diversity with respect to island characteristics on Channel Islands, California J Biogeogr 27 711 723
40. Munz PA (1974) A flora of Southern California. University of California Press, Berkeley
41. H Nybom 2004 Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants Mol Ecol 13 1143 1155
42. O Pellmyr JN Thompson JM Brown RG Harrison 1996 Evolution of pollination and mutualism in the Yucca moth lineage Am Nat 148 827 847
43. Philbrick R (1967) Introduction. In: Philbrick R (ed) Proceedings of the symposium on the biology of the California Islands. Santa Barbara Botanic Garden, Santa Barbara, CA. pp 3-8
44. S Piry G Luikart JM Cournet 1999 BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data J Hered 90 502 503
45. JK Pritchard M Stephens P Donnely 2000 Inference of population structure using multilocus genotype data Genetics 155 945 959
46. Raven PH (1967) The floristics of the California Channel Islands. Santa Barbara Botanic Garden, Santa Barbara
47. J Reynolds B Weir C Cockerham 1983 Estimation of the coancestry coefficient: basis for a short-term genetic distance Genetics 105 767 779
48. JG Segarra-Moragues M Palop-Esteban F Gonzalez-Candelas P Catalan 2005 On the verge of extinction: genetics of the critically endangered Iberian plant species, Borderea chouardii (Dioscoreaceae) and implications for conservation management Mol Ecol 14 969 982
49. S Setsuko K Ishida N Tomaru 2004 Size distribution and genetic structure in relation to clonal growth within a population of Magnolia tomentosa Thumb. (Magnoliaceae) Mol Ecol 13 2645 2653
50. Taylor RL (1965) The genus Lithophragma (Saxifragaceae), vol 37. University of California Publications in Botany, Berkeley
51. K Theodorou D Couvet 2006 Genetic load in subdivided populations: interactions between the migration rate, the size and the number of subpopulations Heredity 96 69 78
52. JN Thompson 1997 Evaluating the dynamics of coevolution among geographically structured populations Ecology 78 1619 1623
53. JN Thompson BM Cunningham 2002 Geographic structure and dynamics of coevolutionary selection Nature 417 735 738
54. U.S. Fish Wildlife Service (1997) Endangered and threatened wildlife and plants: determination of endangered status for three plants from the Channel Islands of Southern California. Federal Register 62:153
55. LE Wallace 2002 Examining the effects of fragmentation on genetic variation in Platanthera leucophaea (Orchidaceae): inferences from allozymes & random amplified polymorphic DNA markers Plant Spec Biol 17 37 49
56. LE Wallace K Helenurm 2005 Isolation of polymorphic microsatellite loci in Crossosoma californicum (Crossosomataceae) Mol Ecol Notes 5 246 248
57. LE Wallace MS Furches K Helenurm 2006 Polymorphic microsatellite loci in Lithophragma maximum (Saxifragaceae), an endemic plant of San Clemente Island Mol Ecol Notes 6 459 461
58. B Weir C Cockerham 1984 Estimating F-statistics for the analysis of population structure Evolution 38 1358 1370
59. GA Wilson B Rannala 2003 Bayesian inference of recent migration rates using multilocus genotypes Genetics 163 1177 1191
60. Yeh FC, Yang RC, Boyle T (1999) POPGENE Version 1.31: University of Alberta and Centre for International Forestry Research. Available at http://www.ualberta.ca/∼fyeh/