Chromatin and the cell cycle meet in Madrid

Development

Volumn 135, Issue 21, 2008, Pages 3475-3480

  Dominguez, Maria ^a   Berger, Frédéric ^b  

^a INSTITUTO DE NEUROCIENCIAS   (Spain)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; TRANSCRIPTION FACTOR;

CANCER GENETICS; CELL CYCLE REGULATION; CELL DIFFERENTIATION; CELL DIVISION; CELL PROLIFERATION; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOME ANALYSIS; CHROMOSOME REPLICATION; CONFERENCE PAPER; DEMETHYLATION; DEVELOPMENTAL BIOLOGY; DNA METHYLATION; DNA MODIFICATION; DNA REPLICATION; DNA SEQUENCE; EMBRYO DEVELOPMENT; EMBRYONIC STEM CELL; EPIGENETICS; GENE EXPRESSION REGULATION; GENE REPRESSION; GENE SILENCING; GENETIC CONSERVATION; GENETIC DISORDER; GENOME ANALYSIS; HETEROCHROMATIN; HUMAN; INHERITANCE; MALIGNANT NEOPLASTIC DISEASE; MITOSIS; NONHUMAN; ORGANOGENESIS; PLURIPOTENT STEM CELL; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN MODIFICATION; REGULATORY MECHANISM; TRANSCRIPTION REGULATION; ANIMAL; CELL CYCLE; METABOLISM; NUCLEAR REPROGRAMMING; SPAIN;

ANIMALIA;

ANIMALS; CELL CYCLE; CHROMATIN; HUMANS; NUCLEAR REPROGRAMMING; PLURIPOTENT STEM CELLS; SPAIN;

EID: 58149357536     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.000844     Document Type: Conference Paper

References (47)

1. Ahmad, K. and Henikoff, S. (2002). Epigenetic consequences of nucleosome dynamics. Cell 111, 281-284.
2. Bastow, R., Mylne, J. S., Lister, C., Lippman, Z., Martienssen, R. A. and Dean, C. (2004). Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427, 164-167.
3. Benetti, R., Gonzalo, S., Jaco, I., Muñoz, P., Gonzalez, S., Schoeftner, S., Murchison, E., Andl, T., Chen, T., Klatt, P. et al. (2008). A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases. Nat. Struct. Mol. Biol. 15, 268-279.
4. Bezhani, S., Winter, C., Hershman, S., Wagner, J. D., Kennedy, J. F., Kwon, C. S., Pfluger, J., Su, Y. and Wagner, D. (2007). Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. Plant Cell 19, 403-416.
5. Caro, E. and Gutierrez, C. (2007). A green GEM: intriguing analogies with animal geminin. Trends Cell Biol. 17, 580-585.
6. Caro, E., Castellano, M. M. and Gutierrez, C. (2007). A chromatin link that couples cell division to root epidermis patterning in Arabidopsis. Nature 447, 213-217.
7. Chan, S. W., Henderson, I. R. and Jacobsen, S. E. (2005). Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6, 351-360.
8. Eminli, S., Utikal, J. S., Arnold, K., Jaenisch, R. and Hochedlinger, K. (2008). Reprogramming of neural progenitor cells into iPS cells in the absence of exogenous Sox2 expression. Stem Cells (in press).
9. Farthing, C. R., Ficz, G., Ng, R. K., Chan, C. F., Andrews, S., Dean, W., Hemberger, M. and Reik, W. (2008). Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS Genet. 4, e1000116.
10. Feil, R. and Berger, F. (2007). Convergent evolution of genomic imprinting in plants and mammals. Trends Genet. 23, 192-199.
11. Ferres-Marco, D., Gutierrez-Garcia, I., Vallejo, D. M., Bolivar, J., Gutierrez-Avino, F. J. and Dominguez, M. (2006). Epigenetic silencers and Notch collaborate to promote malignant tumours by Rb silencing. Nature 439, 430-436.
12. Fuller, M. T. and Spradling, A. C. (2007). Male and female Drosophila germline stem cells: two versions of immortality. Science 316, 402-404.
13. Greb, T., Mylne, J. S., Crevillen, P., Geraldo, N., An, H., Gendall, A. R. and Dean, C. (2007). The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. Curr. Biol. 17, 73-78.
14. Grieneisen, V. A., Xu, J., Maree, A. F., Hogeweg, P. and Scheres, B. (2007). Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449, 1008-1013.
15. Grimanelli, D., Perotti, E., Ramirez, J. and Leblanc, O. (2005). Timing of the maternal-to-zygotic transition during early seed development in maize. Plant Cell 17, 1061-1072.
16. Hake, S. B. and Allis, C. D. (2006). Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis". Proc. Natl. Acad. Sci. USA 103, 6428-6435.
17. Henderson, I. R., Shindo, C. and Dean, C. (2003). The need for winter in the switch to flowering. Annu. Rev. Genet. 37, 371-392.
18. Henikoff, S. and Ahmad, K. (2005). Assembly of variant histones into chromatin. Annu. Rev. Cell Dev. Biol. 21, 133-153.
19. Jansen, L. E., Black, B. E., Foltz, D. R. and Cleveland, D. W. (2007). Propagation of centromeric chromatin requires exit from mitosis. J. Cell Biol. 176, 795-805.
20. Johnson, L. M., Bostick, M., Zhang, X., Kraft, E., Henderson, I., Callis, J. and Jacobsen, S. E. (2007). The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. 17, 379-384.
21. Jullien, P. E., Kinoshita, T., Ohad, N. and Berger, F. (2006a). Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18, 1360-1372.
22. Jullien, P. E., Katz, A., Oliva, M., Ohad, N. and Berger, F. (2006b). Polycomb Group complexes self-regulate imprinting of the Polycomb Group gene MEDEA in Arabidopsis. Curr. Biol. 16, 486-492.
23. Jullien, P. E., Mosquna, A., Ingouff, M., Sakata, T., Ohad, N. and Berger, F. (2008). Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol. 6, e194.
24. Kakutani, T., Munakata, K., Richards, E. J. and Hirochika, H. (1999). Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana. Genetics 151, 831-838.
25. Kloc, A., Zaratiegui, M., Nora, E. and Martienssen, R. (2008). RNA interference guides histone modification during the S phase of chromosomal replication. Curr. Biol. 18, 490-495.
26. Kwon, C. S., Hibara, K., Pfluger, J., Bezhani, S., Metha, H., Aida, M., Tasaka, M. and Wagner, D. (2006). A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary. Development 133, 3223-3230.
27. Lermontova, I., Schubert, V., Fuchs, J., Klatte, S., Macas, J. and Schubert, I. (2006). Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain. Plant Cell 18, 2443-2451.
28. Lermontova, I., Fuchs, J., Schubert, V. and Schubert, I. (2007). Loading time of the centromeric histone H3 variant differs between plants and animals. Chromosoma 116, 507-510.
29. Lessard, J., Schumacher, A., Thorsteinsdottir, U., van Lohuizen, M., Magnuson, T. and Sauvageau, G. (1999). Functional antagonism of the Polycomb-group genes eed and Bmi1 in hemopoietic cell proliferation. Genes Dev. 13, 2691-2703.
30. Lippman, Z., Gendrel, A. V., Colot, V. and Martienssen, R. (2005). Profiling DNA methylation patterns using genomic tiling microarrays. Nat. Methods 2, 219-224.
31. Lister, R., O'Malley, R. C., Tonti-Filippini, J., Gregory, B. D., Berry, C. C., Millar, A. H. and Ecker, J. R. (2008). Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133, 523-536.
32. Lund, A. H. and van Lohuizen, M. (2004). Epigenetics and cancer. Genes Dev. 18, 2315-2335.
33. Maherali, N., Sridharan, R., Xie, W., Utikal, J., Eminli, S., Arnold, K., Stadtfeld, M., Yachechko, R., Tchieu, J., Jaenisch, R. et al. (2007). Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell 1, 55-70.
34. Makarevich, G., Villar, C. B., Erilova, A. and Kohler, C. (2008). Mechanism of PHERES1 imprinting in Arabidopsis. J. Cell Sci. 121, 906-912.
35. Mathieu, O., Reinders, J., Caikovski, M., Smathajitt, C. and Paszkowski, J. (2007). Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation. Cell 130, 851-862.
36. Meyer, S. and Scholten, S. (2007). Equivalent parental contribution to early plant zygotic development. Curr. Biol. 17, 1686-1691.
37. Richards, E. J. (2006). Inherited epigenetic variation - revisiting soft inheritance. Nat. Rev. Genet. 7, 395-401.
38. Saze, H., Scheid, O. M. and Paszkowski, J. (2003). Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat. Genet. 34, 65-69.
39. Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. and Cavalli, G. (2007). Genome regulation by polycomb and trithorax proteins. Cell 128, 735-745.
40. Schuh, M., Lehner, C. F. and Heidmann, S. (2007). Incorporation of Drosophila CID/CENP-A and CENP-C into centromeres during early embryonic anaphase. Curr. Biol. 17, 237-243.
41. Sharif, J., Muto, M., Takebayashi, S., Suetake, I., Iwamatsu, A., Endo, T. A., Shinga, J., Mizutani-Koseki, Y., Toyoda, T., Okamura, K. et al. (2007). The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA. Nature 450, 908-912.
42. Stadtfeld, M., Brennand, K. and Hochedlinger, K. (2008). Reprogramming of pancreatic beta cells into induced pluripotent stem cells. Curr. Biol. 18, 890-894.
43. Vielle-Calzada, J. P., Baskar, R. and Grossniklaus. U. (2000). Delayed activation of the paternal genome during seed development. Nature 404, 91-94.
44. Weijers, D., Geldner, N., Offringa, R. and Jurgens, G. (2001). Seed development: early paternal gene activity in Arabidopsis. Nature 414, 709-710.
45. Wildwater, M., Campilho, A., Perez-Perez, J. M., Heidstra, R., Blilou, I., Korthout, H., Chatterjee, J., Mariconti, L., Gruissem, W. and Scheres, B. (2005). The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell 123, 1337-1349.
46. Woo, H. R., Pontes, O., Pikaard, C. S. and Richards, E. J. (2007). VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes Dev. 21, 267-277.
47. Woo, H. R., Dittmer, T. A. and Richards, E. J. (2008). Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet. 4, e1000156.