Computer-aided design to select optimal polypeptide tags to assist the purification of recombinant proteins

Separation and Purification Technology

Volumn 65, Issue 1, 2009, Pages 86-94

  Lienqueo, M E ^a   Salgado, J C ^a   Giaverini, O ^a   Asenjo, J A ^a  

^a Centre for Biochemical Engineering and Biotechnology   (Chile)

Author keywords

Cutinase; Protein purification processes; Tagged proteins

Indexed keywords

AMINES; COMPUTER AIDED DESIGN; EXPERIMENTS; FUNCTIONS; PROTEINS; PURIFICATION; SYNTHESIS (CHEMICAL);

AND DETECTIONS; BINARY VARIABLES; COMPUTER-AIDED DESIGNS; CUTINASE; DO-MAINS; EXAMPLE BASED; EXPERIMENTAL DATUMS; EXPERIMENTAL TESTS; FUSION PARTNERS; FUSION PROTEINS; IN SILICO; LINEAR RELATIONSHIPS; MINLP MODELS; OBJECTIVE FUNCTIONS; PEPTIDE TAGS; PROTEIN PURIFICATION PROCESSES; PURIFICATION PROCESSES; PURIFICATION SYSTEMS; PURIFICATION TAGS; PURITY LEVELS; RECOMBINANT PROTEINS; TAGGED PROTEINS; TARGET PROTEINS;

MATHEMATICAL MODELS;

EID: 58149316236     PISSN: 13835866     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.seppur.2008.09.001     Document Type: Article

References (46)

1. Nygren P.A., Stahl S., and Uhlen M. Trends Biotechnol. 12 (1994) 184
2. Terpe K. Appl. Microbiol. Biotechnol. 60 (2003) 523
3. Berggren K., Tjerneld F., and Veide A. Bioseparation 9 (2000) 69
4. Bernaudat F., and Bulow L. Protein Exp. Purif. 46 (2006) 438
5. Collen A., Ward M., Tjerneld F., and Stalbrand H. J. Biotechnol. 87 (2001) 179
6. Fexby S., and Bulow L. Trends Biotechnol. 22 (2004) 511
7. Kepka C., Collet E., Roos F., Tjernelda F., and Veide A. J. Chromatogr. A 1075 (2005) 33
8. Nilsson A., Mannesse M., Egmond M.R., and Tjerneld F. J. Chromatogr. A 946 (2002) 141
9. Salazar O., Molitor J., Lienqueo M.E., and Asenjo J.A. Protein Exp. Purif. 23 (2001) 219
10. Ueda E.K., Gout P.W., and Morganti L. J. Chromatogr. A 988 (2003) 1
11. Fexby S., Ihre H., Van Alstine J., and Bulow L. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 807 (2004) 25
12. Hochuli E., Dobeli H., and Schacher A. J. Chromatogr. 411 (1987) 177
13. Rodenbrock A., Selber K., Egmond M.R., and Kula M.-R. Bioseparation 9 (2001) 269
14. Flaschel E., and Friehs K. Biotechnol. Adv. 11 (1993) 31
15. Finn R.D., Kapelioukh I., and Paine M.J. Biotechniques 38 (2005) 387
16. Esposito D., and Chatterjee D.K. Curr. Opin. Biotechnol. 17 (2006) 353
17. Steffens M.A., Fraga E.S., and Bogle I.D. Biotechnol. Bioeng. 68 (2000) 218
18. Waugh D.S. Trends Biotechnol. 23 (2005) 316
19. Bandmann N., Collet E., Leijen J., Uhlen M., Veide A., and Nygren P.A. J. Biotechnol. 79 (2000) 161
20. Niederauer M.Q., Suominen I., Rougvie M.A., Ford C.F., and Glatz C.E. Biotechnol. Prog. 10 (1994) 237
21. Sassenfeld H.M., and Brewer S.J. Biotechnology (NY) 2 (1984) 76
22. Hopp T.P., Pricket K.S., Price V.L., Libby R.T., March C.J., Cerretti D.P., Urdal D.L., and Conlon P.J. Biotechnology (NY) 6 (1988) 1204
23. Schmidt T.G., Koepke J., Frank R., and Skerra A. J. Mol. Biol. 255 (1996) 753
24. Schmidt T.G., and Skerra A. Protein Eng. 6 (1993) 109
25. Evan G.I., Lewis G.K., Ramsay G., and Bishop J.M. Mol. Cell. Biol. 5 (1985) 3610
26. Simeonidis E., Pinto J.M., Lienqueo M.E., Tsoka S., and Papageorgiou L.G. Biotechnol. Prog. 21 (2005) 875
27. Lakhdar K., Farid S.S., Titchener-Hooker N.J., and Papageorgiou L.G. Biotechnol. Prog. 22 (2006) 1630
28. Lakhdar K., Zhou Y., Savery J., Titchener-Hooker N.J., and Papageorgiou L.G. Biotechnol. Prog. 21 (2005) 1478
29. Leser E.W., and Asenjo J.A. Ann. N.Y. Acad. Sci. 721 (1994) 337
30. Steffens M.A., Fraga E.S., and Bogle I.D.L. Comput. Chem. Eng. 24 (2000) 717
31. Vasquez-Alvarez E., Lienqueo M.E., and Pinto J.M. Biotechnol. Prog. 17 (2001) 685
32. Vasquez-Alvarez E., and Pinto J.M. J. Biotechnol. 110 (2004) 295
33. Groep M.E., Gregory M.E., Kershenbaum L.S., and Bogle I.D.L. Biotechnol. Bioeng. 67 (2000) 300
34. Mosher R.A., Gebauer P., and Thormann W. J. Chromatogr. 638 (1993) 155
35. Hopp T.P., and Woods K.R. Proc. Natl. Acad. Sci. U.S.A. 78 (1981) 3824
36. Lienqueo M.E., Salazar O., Henriquez K., Calado C.R., Fonseca L.P., and Cabral J.M. J. Chromatogr. A 1154 (2007) 460
37. Lienqueo M.E., Mahn A., and Asenjo J.A. J. Chromatogr. A 978 (2002) 71
38. M.E. Lienqueo, Development of an Expert System for the Rational Selection of Protein Purification Processes: Optimisation of Sequence Selection Criteria, PhD Thesis, University of Chile, Santiago, Chile (1999).
39. L. Castilho, Personal communication, 2005.
40. O. Giaverini, Optimization of polypeptide tags for protein purification, Engineer Thesis, University of Chile, Santiago, Chile (2005).
41. Leser E.W., Lienqueo M.E., and Asenjo J.A. Ann. N. Y. Acad. Sci. 782 (1996) 441
42. P.W. Woolston, Database for an expert system for the selection of recombinant protein purification processes, PhD Thesis, The University of Reading, Reading, England (1994).
43. Sigma, Biochemicals & Reagents for Life Science Research, first ed., 2004-2005.
44. Merck, Chemical reagents, first ed., 2002.
45. Miyazawa S., and Jernigan R. Macromolecules 18 (1985) 534
46. Miller S., Janin J., Lesk A.M., and Chothia C. J. Mol. Biol. 196 (1987) 641