Alternative modes of binding of recombinant human histone deacetylase 8 to colloidal gold nanoparticles

Journal of Biomedical Nanotechnology

Volumn 4, Issue 4, 2008, Pages 463-468

  Sule, Nitesh ^a   Singh, Raushan ^a   Srivastava, D K ^a  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

Binding; Cancer; Gold nanoparticles; Histone deacetylase

Indexed keywords

BINDING ENERGY; COLLOIDS; DRUG THERAPY; ENZYMES; FLOCCULATION; FLOW INTERACTIONS; GOLD; NANOPARTICLES; PYROLYSIS;

ACTIVE SITES; BINDING; BINDING AFFINITIES; CANCER; CANCER THERAPIES; CATALYTIC ACTIVITIES; COLLOIDAL GOLD NANOPARTICLES; DRUG TARGETS; ENZYMATIC ACTIVITIES; ENZYME BOUNDS; FREE ENZYMES; GOLD NANOPARTICLES; HISTONE DEACETYLASE; HISTONE DEACETYLASES; NANOPARTICLE SURFACES; STRUCTURAL FEATURES; SULFHYDRYL GROUPS; THERAPEUTIC APPLICATIONS; THIOL GROUPS; TRANSCRIPTIONAL REGULATIONS; TRICHOSTATIN A;

ENZYME ACTIVITY;

COLLOIDAL GOLD; HISTONE DEACETYLASE 8; NANOPARTICLE; RECOMBINANT HISTONE DEACETYLASE 8; THIOL GROUP; TRICHOSTATIN A; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CATALYSIS; COMPLEX FORMATION; CONTROLLED STUDY; DENATURATION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME BINDING; ENZYME STABILITY; ENZYME STRUCTURE; FLOCCULATION; THERMAL EXPOSURE; THERMOSTABILITY;

EID: 58149289831     PISSN: 15507033     EISSN: 15507041     Source Type: Journal    
DOI: 10.1166/jbn.2008.011     Document Type: Article

References (29)

1. J. Wu and M. GrunStein, 25 years after the nucleosome model: Chromatin modifications. Trends Biochem. Sci. 25, 619 (2000).
2. B. D. Strahl and C. D. Allis, The language of covalent histone modifications. Nature 403, 41 (2000).
3. S. Minucci and P. G. Pelicci, Histone deacetylase inhibitors and the promise of epigenetic (and more) treatment for cancer. Nature Rev. Cancer 6, 38 (2006).
4. M. Nakagawa, Y. Oda, T. Eguchi, S. Aishima, T. Yao, F. Hosoi, Y. Basaki, M. Ono, M. Kuwano, M. Tanaka, and M. Tsuneyoshi, Expression profile of class I histone deacetylases in human cancer tissues. Oncol Report 18, 769 (2007).
5. M. A. Glozak and E. Seto, Histone deacetylase and cancer. Oncogene 26, 5420 (2007).
6. P. Gallinari, S. Di Marco, P. Jones, M. Pallaoro, and C. Steinkuhler, HDACs, histone deacetylation and gene transcription: From molecular biology to cancer therapeutics. Cell Res. 17, 195 (2007).
7. R. W. Johnstone, Histone-deacetylase inhibitors: Novel drugs for the treatment of cancer. Nature Rev. Drug Discov. 1, 287 (2002).
8. G. Ken, HDAC inhibitors overcome first hurdle, News feature. Nature Biotechnol. 25, 17 (2007).
9. I. V. Gregoretti, Y. Lee, and H. V. Goodson, Molecular evolution of the histone deacetylase family: Functional implications of phylogenetic analysis. J. Mol. Bio. 338, 31 (2004).
10. N. Sengupta and E. Seto, Regulation of histone deacetylase activities. J. Cell Biochem. 93, 57 (2004).
11. X. J. Yang and E. Seto, Collaborative spirit of histone deacetylases in regulating chromatin structure and gene expression. Curr. Opin. Genet. Dev. 13, 143 (2003).
12. E. Hu, Z. Chen, T. Fredrickson, Y. Zhu, R. Kirkpatrick, G.-F. Zhang, K. Johanson, C.-M. Sung, R. Liu, and J. Winkler, Cloning and characterization of a novel human class I histone deacetylase that functions as a transcription repressor. J. Biol. Chem. 275, 15254 (2000).
13. A. Vannini, C. Volpari, G. Filocamo, E. C. Casavola, M. Brunetti, D. Renzoni, P. Chakravarty, C. Paolini, R. D. Francesco, P. Gallinari, C. Steinkiihler, and S. D. Marco, Crystal structure of a eukaryotic zinc-dependent histone deacetylase, human HDAC8, complexed with a hydroxamic acid inhibitor. Proc. Natl. Acad. Sci. USA 101, 115064 (2004).
14. M. M. Bradford, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248 (1976).
15. W. D. Geoghegan and G. A. Ackerman, Adsorption of horseradish peroxidase, ovomucoid and anti-immunoglobulin to colloidal gold for the indirect detection of Concanavalin A, wheat germ agglutinin and goat anti-human immunoglobulin G on cell surfaces at the electron microscopic level: A new method, theory and application. J. Hist. Cyt. 25, 1187 (1977).
16. L. Qin and D. K. Srivastava, Energetics of two-step binding of a chromophoric reaction product, trans-3-indoleacryloyl-coa, to medium-chain acyl-coenzyme-a dehydrogenase. Biochemistry 37, 3499 (1998).
17. M. Horisberger, J. Rosset, and H. Bauer, Colloidal gold granules as markers for cell surface receptors in the scanning electron microscope. Experientia 31, 1147 (1975).
18. A. L. Banerjee, M. Swanson, B. C. Roy, X. Jia, M. K. Haldar, S. Mallik, and D. K. Srivastava, Protein surface-assisted enhancement in the binding affinity of an inhibitor for recombinant human carbonic anhydrase-II. J. Am. Chem. Soc. 126, 10875 (2004).
19. B. E. Schultz, S. Misialek, J. Wu, J. Tang, M. T. Conn, R. Tahilramani, and L. Wong, Kinetics and comparative reactivity of human class I and class IIb histone deacetylases. Biochemistry 43, 11083 (2004).
20. Y. C. Sasaki, K. Yasuda, Y. Suzuki, T. Ishibashi, I. Satoh, Y. Fujiki, and S. Ishiwata, Two dimensional arrangement of a functional protein by cysteine-gold interaction: Enzyme activity and characterization of a protein monolayer on a gold substrate. Biophys. J. 72, 1842 (1997).
21. A. Ulman, Introduction to Thin Films: From Langmuir-Blodgett Films to Self Assembly, Academic Press, Boston (1991).
22. Q. Sun, B. V. Reddy, M. Marquez, P. Jena, C. Gonzales, and Q. Wang, Theoretical study on gold-coated iron oxide nanostructure: Magnetism and bioselectivity for amino acids. J. Phys. Chem. C 111, 4159 (2007).
23. D. Li, Q. He, Y. Cui, L. Duan, and J. Li, Immobilization of glucose oxidase onto gold nanoparticles with enhanced thermostability. Biochem. Biophys. Res. Comm. 355, 488 (2007).
24. X. Jiang, L. Shang, Y. Wang, and S. Dong, Cytochrome c superstructure biocomposite nucleated by gold nanoparticle: Thermal stability and voltammetric behaviour. Biomacromolecules 6, 3030 (2005).
25. A. Sadana, Protein adsorption and inactivation on surfaces: Influence of heterogeneities. Chem. Rev. 92, 1799 (1992).
26. H. S. Mandal and H.-B. Kraatz, Effect of the surface curvature on the secondary structure of peptide adsorbed on nanoparticles. J. Am. Chem. Soc. 129, 6356 (2007).
27. S. Chah, M. R. Hammond, and R. N. Zare, Gold nanoparticles as a colorimetric sensor for protein conformational changes. Chem. and Biol. 12, 323 (2005).
28. S. H. Brewer, W. R. Glomm, M. C. Johnson, M. K. Knag, and S. Franzen, Probing BSA binding to citrate-coated gold nanoparticles and surfaces. Langmuir 21, 9303 (2005).
29. C. Lin, Y.-C. Yeh, C.-Y. Yang, C.-L. Chen, G.-F. Chen, C. Chen, and Y. Wu, Selective binding of mannose-encapsulated gold nanoparticles to type 1 pili in Escherichia coli. J. Am. Chem. Soc. 124, 3508 (2002).