메뉴 건너뛰기




Volumn 47, Issue 51, 2008, Pages 13659-13665

Probing the catalytic triad of an archaeal RNA splicing endonuclease

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL; CATALYTIC TRIADS; CLEAVAGE REACTIONS; CONSERVED RESIDUES; DATA SUPPORTS; DIVALENT METALS; DOUBLE MUTATIONS; ENDONUCLEASE; FUNCTIONAL ROLES; GLUTAMIC ACIDS; RNA CLEAVAGES; RNA MOLECULES; RNA SPLICING; SINGLE MUTATIONS;

EID: 58149144731     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi801141q     Document Type: Article
Times cited : (11)

References (23)
  • 1
    • 42449113800 scopus 로고    scopus 로고
    • RNA-splicing endonuclease structure and function
    • Calvin, K., and Li, H. (2008) RNA-splicing endonuclease structure and function. Cell. Mol. Life Sci. 65, 1176-1185.
    • (2008) Cell. Mol. Life Sci , vol.65 , pp. 1176-1185
    • Calvin, K.1    Li, H.2
  • 4
    • 0032831634 scopus 로고    scopus 로고
    • Relationship between internucleotide linkage geometry and the stability of RNA
    • Soukup, G. A., and Breaker, R. R. (1999) Relationship between internucleotide linkage geometry and the stability of RNA. RNA 5, 1308-1325.
    • (1999) RNA , vol.5 , pp. 1308-1325
    • Soukup, G.A.1    Breaker, R.R.2
  • 6
    • 0020710638 scopus 로고
    • Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease
    • Peebles, C. L., Gegenheimer, P., and Abelson, J. (1983) Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32, 525-536.
    • (1983) Cell , vol.32 , pp. 525-536
    • Peebles, C.L.1    Gegenheimer, P.2    Abelson, J.3
  • 7
    • 33646538487 scopus 로고    scopus 로고
    • RNA recognition and cleavage by a splicing endonuclease
    • Xue, S., Calvin, K., and Li, H. (2006) RNA recognition and cleavage by a splicing endonuclease. Science 312, 906-910.
    • (2006) Science , vol.312 , pp. 906-910
    • Xue, S.1    Calvin, K.2    Li, H.3
  • 8
    • 34547622435 scopus 로고    scopus 로고
    • In-line attack conformational effect plays a modest role in an enzyme-catalyzed RNA cleavage: A free energy simulation study
    • Min, D., Xue, S., Li, H., and Yang, W. (2007) "In-line attack" conformational effect plays a modest role in an enzyme-catalyzed RNA cleavage: A free energy simulation study. Nucleic Acids Res. 35, 4001-4006.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4001-4006
    • Min, D.1    Xue, S.2    Li, H.3    Yang, W.4
  • 9
    • 0031828144 scopus 로고    scopus 로고
    • Hammerhead ribozyme kinetics
    • Stage-Zimmermann, T. K., and Uhlenbeck, O. C. (1998) Hammerhead ribozyme kinetics. RNA 4, 875-889.
    • (1998) RNA , vol.4 , pp. 875-889
    • Stage-Zimmermann, T.K.1    Uhlenbeck, O.C.2
  • 11
    • 0032062099 scopus 로고    scopus 로고
    • Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: The bulge-helix-bulge motif
    • Diener, J. L., and Moore, P. B. (1998) Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: The bulge-helix-bulge motif. Mol. Cell 1, 883-894.
    • (1998) Mol. Cell , vol.1 , pp. 883-894
    • Diener, J.L.1    Moore, P.B.2
  • 12
    • 0036294225 scopus 로고    scopus 로고
    • Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III: Insights into mechanism and conformational changes associated with binding and catalysis
    • Campbell, F. E., Jr., Cassano, A. G., Anderson, V. E., and Harris, M. E. (2002) Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III: Insights into mechanism and conformational changes associated with binding and catalysis. J. Mol. Biol. 317, 21-40.
    • (2002) J. Mol. Biol , vol.317 , pp. 21-40
    • Campbell Jr., F.E.1    Cassano, A.G.2    Anderson, V.E.3    Harris, M.E.4
  • 13
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech, T. R. (1990) Self-splicing of group I introns. Annu. Rev. Biochem. 59, 543-568.
    • (1990) Annu. Rev. Biochem , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 14
    • 0036493198 scopus 로고    scopus 로고
    • Compilation and analysis of group II intron insertions in bacterial genomes: Evidence for retroelement behavior
    • Dai, L., and Zimmerly, S. (2002) Compilation and analysis of group II intron insertions in bacterial genomes: Evidence for retroelement behavior. Nucleic Acids Res. 30, 1091-1102.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1091-1102
    • Dai, L.1    Zimmerly, S.2
  • 15
    • 31044448524 scopus 로고    scopus 로고
    • Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III
    • Gan, J., Tropea, J. E., Austin, B. P., Court, D. L., Waugh, D. S., and Ji, X. (2006) Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III. Cell 124, 355-366.
    • (2006) Cell , vol.124 , pp. 355-366
    • Gan, J.1    Tropea, J.E.2    Austin, B.P.3    Court, D.L.4    Waugh, D.S.5    Ji, X.6
  • 16
    • 0030750183 scopus 로고    scopus 로고
    • Effects of divalent metal ions on individual steps of the Tetrahymena ribozyme reaction
    • McConnell, T. S., Herschlag, D., and Cech, T. R. (1997) Effects of divalent metal ions on individual steps of the Tetrahymena ribozyme reaction. Biochemistry 36, 8293-8303.
    • (1997) Biochemistry , vol.36 , pp. 8293-8303
    • McConnell, T.S.1    Herschlag, D.2    Cech, T.R.3
  • 17
    • 21244451435 scopus 로고    scopus 로고
    • Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
    • Nowotny, M., Gaidamakov, S. A., Crouch, R. J., and Yang, W. (2005) Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis. Cell 121, 1005-1016.
    • (2005) Cell , vol.121 , pp. 1005-1016
    • Nowotny, M.1    Gaidamakov, S.A.2    Crouch, R.J.3    Yang, W.4
  • 19
    • 0030807507 scopus 로고    scopus 로고
    • Stress-Induced Production of Biofilm in the Hyperthermophile Archaeoglobus fulgidus
    • Lapaglia, C., and Hartzell, P. L. (1997) Stress-Induced Production of Biofilm in the Hyperthermophile Archaeoglobus fulgidus. Appl. Environ. Microbiol. 63, 3158-3163.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 3158-3163
    • Lapaglia, C.1    Hartzell, P.L.2
  • 21
    • 0030015272 scopus 로고    scopus 로고
    • Another heritage from the RNA world: Self-excision of intron sequence from nuclear pre-tRNAs
    • Weber, U., Beier, H., and Gross, H. J. (1996) Another heritage from the RNA world: Self-excision of intron sequence from nuclear pre-tRNAs. Nucleic Acids Res. 24, 2212-2219.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2212-2219
    • Weber, U.1    Beier, H.2    Gross, H.J.3
  • 22
    • 0034703232 scopus 로고    scopus 로고
    • Crystal structure of a dimeric archaeal splicing endonuclease
    • Li, H., and Abelson, J. (2000) Crystal structure of a dimeric archaeal splicing endonuclease. J. Mol. Biol. 302, 639-648.
    • (2000) J. Mol. Biol , vol.302 , pp. 639-648
    • Li, H.1    Abelson, J.2
  • 23
    • 33846354878 scopus 로고    scopus 로고
    • Achieving specific RNA cleavage activity by an inactive splicing endonuclease subunit through engineered oligomerization
    • Calvin, K., and Li, H. (2007) Achieving specific RNA cleavage activity by an inactive splicing endonuclease subunit through engineered oligomerization. J. Mol. Biol. 366, 642-649.
    • (2007) J. Mol. Biol , vol.366 , pp. 642-649
    • Calvin, K.1    Li, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.