Tandem leader proteases of Grapevine leafroll-associated virus-2: Host-specific functions in the infection cycle

Virology

Volumn 383, Issue 2, 2009, Pages 291-299

  Liu, Yu Ping ^a   Peremyslov, Valera V ^a   Medina, Vicente ^b   Dolja, Valerian V ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF LLEIDA   (Spain)

Author keywords

Closterovirus; Grapevine leafroll associated virus 2; Papain like protease; Systemic transport

Indexed keywords

L1 ENZYME; L2 ENZYME; PROTEINASE; UNCLASSIFIED DRUG;

ARTICLE; CLOSTEROVIRUS; CONTROLLED STUDY; GRAPE; GRAPEVINE LEAFROLL ASSOCIATED VIRUS 2; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; REPLICON; TOBACCO; VIRUS INFECTION; VIRUS REPLICATION;

CLOSTEROVIRUS; GENE DELETION; GENES, REPORTER; MEMBRANE PROTEINS; PLANT DISEASES; RNA, VIRAL; SERINE ENDOPEPTIDASES; TOBACCO; VIRAL PROTEINS; VIRUS REPLICATION; VITIS;

CLOSTEROVIRUS; GRAPEVINE LEAFROLL-ASSOCIATED VIRUS 2; NICOTIANA BENTHAMIANA; VITIS VINIFERA;

EID: 58149117727     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.09.035     Document Type: Article

References (65)

1. Agranovsky A.A., Lesemann D.E., Maiss E., Hull R., and Atabekov J.G. "Rattlesnake" structure of a filamentous plant RNA virus built of two capsid proteins. Proc. Natl. Acad. Sci. U.S.A. 92 7 (1995) 2470-2473
2. Alzhanova D.V., Hagiwara Y., Peremyslov V.V., and Dolja V.V. Genetic analysis of the cell-to-cell movement of beet yellows Closterovirus. Virology 268 1 (2000) 192-200
3. Alzhanova D.V., Napuli A., Creamer R., and Dolja V.V. Cell-to-cell movement and assembly of a plant Closterovirus: roles for the capsid proteins and Hsp70 homolog. EMBO J. 20 (2001) 6997-7007
4. Alzhanova D.V., Prokhnevsky A.I., Peremyslov V.V., and Dolja V.V. Virion tails of Beet yellows virus: coordinated asembly by three structural proteins. Virology 359 (2007) 220-226
5. Barrett A.J., and Rawlings N.D. Evolutionary lines of cysteine peptidases. Biol. Chem. 382 (2001) 727-733
6. Boyko V.P., Karasev A.V., Agranovsky A.A., Koonin E.V., and Dolja V.V. Coat protein gene duplication in a filamentous RNA virus of plants. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 9156-9160
7. Chiba M., Reed J.C., Prokhnevsky A.I., Chapman E.J., Mawassi M., Koonin E.V., Carrington J.C., and Dolja V.V. Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon. Virology 346 (2006) 7-14
8. de los Santos T., de Avila Botton S., Weiblen R., and Grubman M.J. The leader proteinase of foot-and-mouth disease virus inhibits the induction of beta interferon mRNA and blocks the host innate immune response. J. Virol. 80 (2006) 1906-1914
9. Ding S.W., and Voinnet O. Antiviral immunity directed by small RNAs. Cell 130 (2007) 413-426
10. Dolja V.V. Beet yellows virus: the importance of being different. Mol. Plant Pathol. 4 (2003) 91-98
11. Dolja V.V., McBride H.J., and Carrington J.C. Tagging of plant potyvirus replication and movement by insertion of beta-glucuronidase into the viral polyprotein. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 10208-10212
12. Dolja V.V., Kreuze J.F., and Valkonen J.P. Comparative and functional genomics of closteroviruses. Virus Res. 117 (2006) 38-51
13. Dougherty W.G., and Semler B.L. Expression of virus-encoded proteinases: functional and structural similarities with cellular enzymes. Microbiol. Rev. 57 4 (1993) 781-822
14. Folimonov A.S., Folimonova S.Y., Bar-Joseph M., and Dawson W.O. A stable RNA virus-based vector for citrus trees. Virology 368 1 (2007) 205-216
15. Gabrenaite-Verkhovskaya R., Andreev I.A., Kalinina N.O., Torrance L., Taliansky M.E., and Mäkinen K. Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants. J. Gen. Virol. 89 (2008) 829-838
16. Goodin M.M., Zaitlin D., Naidu R.A., and Lommel S.A. Nicotiana benthamiana: its history and future as a model for plant-pathogen interactions. Mol. Plant Microbe. Interact. 21 (2008) 1015-1026
17. Gorbalenya A.E., Donchenko A.P., Blinov V.M., and Koonin E.V. Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural fold. FEBS Lett. 243 (1989) 103-114
18. Gorbalenya A.E., Koonin E.V., and Lai M.M. Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses. FEBS Lett. 288 1-2 (1991) 201-205
19. Gorbalenya A.E., Enjuanes L., Ziebuhr J., and Snijder E.J. Nidovirales: evolving the largest RNA virus genome. Virus Res 117 1 (2006) 17-37
20. Goszczynski D.E., Kasdorf G.G.F., Pietersen G., and van Tonder H. Detection of two strains of grapevine leafroll-associated virus 2. Vitis 35 (1996) 133-135
21. Hagiwara Y., Peremyslov V.V., and Dolja V.V. Regulation of closterovirus gene expression examined by insertion of a self-processing reporter and by northern hybridization. J. Virol. 73 (1999) 7988-7993
22. Haseloff J., Siemering K.R., Prasher D.C., and Hodge S. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc. Natl. Acad. Sci. U.S.A. 94 6 (1997) 2122-2127
23. Karasev A.V. Genetic Diversity and Evolution of Closteroviruses. Annu. Rev. Phytopathol. 38 (2000) 293-324
24. Karasev A.V., Boyko V.P., Gowda S., Nikolaeva O.V., Hilf M.E., Koonin E.V., Niblett C.L., Cline K., Gumpf D.J., Lee R.F., Garnsey S.M., Lewandowski D.J., and Dawson W.O. Complete sequence of the citrus tristeza virus RNA genome. Virology 208 (1995) 511-520
25. Kasschau K.D., Cronin S., and Carrington J.C. Genome amplification and long-distance movement functions associated with the central domain of tobacco etch potyvirus helper component-proteinase. Virology 228 2 (1997) 251-262
26. Koonin E.V., and Dolja V.V. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28 5 (1993) 375-430
27. Koonin E.V., and Dolja V.V. Evolution of complexity in the viral world: the dawn of a new vision. Virus Res. 117 (2006) 1-4
28. Lakatos L., Csorba T., Pantaleo V., Chapman E.J., Carrington J.C., Liu Y.P., Dolja V.V., Calvino L.F., Lopez-Moya J.J., and Burgyan J. Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J. 25 (2006) 2768-2780
29. Lindner H.A. Deubiquitination in virus infection. Virology 362 (2007) 245-256
30. Lu R., Folimonov A.S., Shintaku M., Li W.X., Falk B.W., Dawson W.O., and Ding S.W. Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 15742-15747
31. Martelli G.P., Adams M.J., Kreuze J.F., and Dolja V.V. Family Flexiviridae: a case study in virion and genome plasticity. Annu. Rev. Phytopathol. 45 (2007) 73-100
32. Medina V., Peremyslov V.V., Hagiwara Y., and Dolja V.V. Subcellular localization of the HSP70-homolog encoded by beet yellows Closterovirus. Virology 260 1 (1999) 173-181
33. Meng B., Li C., Goszczynski D.E., and Gonsalves D. Genome sequences and structures of two biologically distinct strains of Grapevine leafroll-associated virus 2 and sequence analysis. Virus Genes 31 (2005) 31-41
34. Napuli A.J., Falk B.W., and Dolja V.V. Interaction between HSP70 homolog and filamentous virions of the Beet yellows virus. Virology 274 1 (2000) 232-239
35. Napuli A.J., Alzhanova D.V., Doneanu C.E., Barofsky D.F., Koonin E.V., and Dolja V.V. The 64-kDa capsid protein homolog of beet yellows virus is required for assembly of virion tails. J. Virol. 77 (2003) 2377-2384
36. Ng J.C.K., and Falk B.W. Virus-vector interactions mediating nonpersistent and semipersistent transmission of plant viruses. Annu. Rev. Phytopathol. 44 (2006) 183-212
37. Peng C.W., and Dolja V.V. Leader proteinase of the beet yellows Closterovirus: mutation analysis of the function in genome amplification. J. Virol. 74 (2000) 9766-9770
38. Peng C.W., Peremyslov V.V., Mushegian A.R., Dawson W.O., and Dolja V.V. Functional specialization and evolution of leader proteinases in the family Closteroviridae. J. Virol. 75 24 (2001) 12153-12160
39. Peng C.W., Peremyslov V.V., Snijder E.J., and Dolja V. A replication-competent chimera of the plant and animal viruses. Virology 294 (2002) 75-84
40. Peng C.W., Napuli A.J., and Dolja V.V. Leader proteinase of the beet yellows virus functions in long-distance transport. J. Virol. 77 (2003) 2843-2849
41. Peremyslov V.V., and Dolja V.V. Cloning of large positive-strand RNA viruses. Curr. Protocols Microbiol. Suppl. 7 (2007) 16F.1.1-16F.1.26
42. Peremyslov V.V., Hagiwara Y., and Dolja V.V. Genes required for replication of the 15.5-kilobase RNA genome of a plant Closterovirus. J. Virol. 72 (1998) 5870-5876
43. Peremyslov V.V., Hagiwara Y., and Dolja V.V. HSP70 homolog functions in cell-to-cell movement of a plant virus. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 14771-14776
44. Peremyslov V.V., Andreev I.A., Prokhnevsky A.I., Duncan G.H., Taliansky M.E., and Dolja V.V. Complex molecular architecture of beet yellows virus particles. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 5030-5035
45. Peremyslov V.V., Pan Y.-W., and Dolja V.V. Movement protein of a Closterovirus is a type III integral transmembrane protein localized to the endoplasmic reticulum. J. Virol. 78 (2004) 3704-3709
46. Pogue G.P., Lindbo J.A., Garder S.J., and Fitzmaurice W.P. Making an ally from an enemy: plant virology and the new agriculture. Annu. Rev. Phytopathol. 40 (2002) 45-74
47. Prokhnevsky A.I., Peremyslov V.V., Napuli A.J., and Dolja V.V. Interaction between long-distance transport factor and Hsp70-related movement protein of beet yellows virus. J. Virol. 76 (2002) 11003-11011
48. Reed J.C., Kasschau K.D., Prokhnevsky A.I., Gopinath K., Pogue G.P., Carrington J.C., and Dolja V.V. Suppressor of RNA silencing encoded by beet yellows virus. Virology 306 (2003) 203-209
49. Satyanarayana T., Gowda S., Mawassi M., Albiach-Marti M.R., Ayllon M.A., Robertson C., Garnsey S.M., and Dawson W.O. Closterovirus encoded HSP70 homolog and p61 in addition to both coat proteins function in efficient virion assembly. Virology 278 1 (2000) 253-265
50. Satyanarayana T., Gowda S., Ayllon M.A., and Dawson W.O. Closterovirus bipolar virion: evidence for initiation of assembly by minor coat protein and its restriction to the genomic RNA 5′ region. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 799-804
51. Segers G.C., van Wezel R., Zhang X., Hong Y., and Nuss D.L. Hypovirus papin-like protease p29 suppresses RNA silencing in the natural fungal host and in a heterologous plant system. Eukaryot. Cell 5 (2006) 896-904
52. Susaimuthu J., Tzanetakis I.E., Gergerich R.C., and Martin R.R. A member of a new genus in the Potyviridae infects Rubus. Virus Res. 131 (2008) 145-151
53. Tian T., Rubio L., Yeh H.-H., Crawford B., and Falk B.W. Lettuce infectious yellows virus: in vitro acquisition analysis using partially purified virions and the whitefly, Bemisia tabaci. J. Gen. Virol. 80 (1999) 1111-1117
54. Tijms M.A., Nedialkova D.D., Zevenhoven-Dobbe J.C., Gorbalenya A.E., and Snijder E.J. Arterivirus subgenomic mRNA synthesis and virion biogenesis depend on the multifunctional nsp1 autoprotease. J. Virol. 81 (2007) 10496-10505
55. Torrance L., Andreev I.A., Gabrenaite-Verhovskaya R., Cowan G., Makinen K., and Taliansky M.E. An unusual structure at one end of potato potyvirus particles. J. Mol. Biol. 357 (2005) 1-8
56. Tzanetakis I.E., and Martin R.R. Strawberry chlorotic fleck: identification and characterization of a novel Closterovirus associated with the disease. Virus Res. 124 (2007) 88-94
57. Tzanetakis I.E., Postman J., and Martin R.R. Characterization of a novel member of the family Closteroviridae from Mentha spp. Phytopathology 95 (2005) 1043-1048
58. Tzanetakis I.E., Halgren A., Mosier N., and Martin R.R. Identification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae. Virus Res. 127 (2007) 26-33
59. Urcuqui-Inchima S., Haenni A.L., and Bernardi F. Potyvirus proteins: a wealth of functions. Virus Res. 74 (2001) 157-175
60. Valli A., Martín-Hernández A.M., López-Moya J.J., and García J.A. RNA silencing suppression by a second copy of the P1 serine protease of Cucumber vein yellowing ipomovirus (CVYV), a member of the family Potyviridae that lacks the cysteine protease HCPro. J. Virol. 80 (2006) 10055-10063
61. van den Born E., Omelchenko M.V., Bekkelund A., Leihne V., Koonin E.V., Dolja V.V., and Falnes P.O. Viral AlkB proteins repair RNA damage by oxidative demethylation. Nucleic Acids Res. 36 (2008) 5451-5461
62. Xiang C., Han P., Lutziger I., Wang K., and Oliver D.J. A mini binary vector series for plant transformation. Plant Mol. Biol. 40 (1999) 711-717
63. Zhu H.Y., Ling K.S., Goszczynski D.E., McFerson J.R., and Gonsalves D. Nucleotide sequence and genome organization of grapevine leafroll-associated virus-2 are similar to beet yellows virus, the Closterovirus type member. J. Gen. Virol. 79 (1998) 1289-1298
64. Ziebuhr J., Schelle B., Karl N., Minskaia E., Bayer S., Siddell S.G., Gorbalenya A.E., and Thiel V. Human coronavirus 229E papain-like proteases have overlapping specificities but distinct functions in viral replication. J. Virol. 81 (2007) 3922-3932
65. Ziebuhr J., Snijder E.J., and Gorbalenya A.E. Virus-encoded proteinases and proteolytic processing in the Nidovirales. J. Gen. Virol. 81 (2000) 853-879