-
1
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, et al. (2004) The Pfam protein families database. Nucleic Acids Res 32:D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
-
2
-
-
33745126550
-
Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus. Acta Crystallogr F
-
Pleshe E, Truesdell J, Batey RT (2005) Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus. Acta Crystallogr F 61:722-728.
-
(2005)
, vol.61
, pp. 722-728
-
-
Pleshe, E.1
Truesdell, J.2
Batey, R.T.3
-
3
-
-
1842607227
-
Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme
-
Nureki O, et al. (2004) Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme. Structure 12:593-602.
-
(2004)
Structure
, vol.12
, pp. 593-602
-
-
Nureki, O.1
-
4
-
-
0035997122
-
An enzyme with a deep trefoil knot for the active-site architecture
-
Nureki O, et al. (2002) An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr D 58:1129-1137.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 1129-1137
-
-
Nureki, O.1
-
5
-
-
9644281537
-
Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes
-
Mosbacher TG, Bechthold A, Schulz GE (2005) Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes. J Mol Biol 345:535-545.
-
(2005)
J Mol Biol
, vol.345
, pp. 535-545
-
-
Mosbacher, T.G.1
Bechthold, A.2
Schulz, G.E.3
-
6
-
-
0036774065
-
The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot
-
Michel G, et al. (2002) The structure of the RlmB 23S rRNA methyltransferase reveals a new methyltransferase fold with a unique knot. Structure 10:1303-1315.
-
(2002)
Structure
, vol.10
, pp. 1303-1315
-
-
Michel, G.1
-
7
-
-
0037375572
-
Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot
-
Lim K, et al. (2003) Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot. Proteins Struct Funct Genet 51:56-67.
-
(2003)
Proteins Struct Funct Genet
, vol.51
, pp. 56-67
-
-
Lim, K.1
-
8
-
-
0142216637
-
Insights into catalysis by a knotted TrmD tRNA methyltransferase
-
Elkins PA, et al. (2003) Insights into catalysis by a knotted TrmD tRNA methyltransferase. J Mol Biol 333:931-949.
-
(2003)
J Mol Biol
, vol.333
, pp. 931-949
-
-
Elkins, P.A.1
-
9
-
-
0037526102
-
Crystal structure of tRNA(m1G37) methyltransferase: Insights into tRNA recognition
-
Ahn HJ, et al. (2003) Crystal structure of tRNA(m1G37) methyltransferase: Insights into tRNA recognition. EMBO J 22:2593-2603.
-
(2003)
EMBO J
, vol.22
, pp. 2593-2603
-
-
Ahn, H.J.1
-
10
-
-
0034710671
-
A deeply knotted protein structure and how it might fold
-
Taylor WR (2000) A deeply knotted protein structure and how it might fold. Nature 406:916-919.
-
(2000)
Nature
, vol.406
, pp. 916-919
-
-
Taylor, W.R.1
-
11
-
-
34248570354
-
Protein knots and fold complexity: Some new twists
-
Taylor WR (2007) Protein knots and fold complexity: Some new twists. Comput Biol Chem 31:151-162.
-
(2007)
Comput Biol Chem
, vol.31
, pp. 151-162
-
-
Taylor, W.R.1
-
12
-
-
0037413604
-
Protein knots: A tangled problem
-
Taylor WR, Lin K (2003) Protein knots: A tangled problem. Nature 421:25.
-
(2003)
Nature
, vol.421
, pp. 25
-
-
Taylor, W.R.1
Lin, K.2
-
14
-
-
36549032188
-
Knotted and topologically complex proteins as models for studying folding and stability
-
Yeates TO, Norcross TS, King NP (2007) Knotted and topologically complex proteins as models for studying folding and stability. Curr Opin Chem Biol 11:595-603.
-
(2007)
Curr Opin Chem Biol
, vol.11
, pp. 595-603
-
-
Yeates, T.O.1
Norcross, T.S.2
King, N.P.3
-
15
-
-
33749347406
-
Intricate knots in proteins: Function and evolution
-
Virnau P, Mirny LA, Kardar M (2006) Intricate knots in proteins: Function and evolution. PLoS Comput Biol 2:1074-1079.
-
(2006)
PLoS Comput Biol
, vol.2
, pp. 1074-1079
-
-
Virnau, P.1
Mirny, L.A.2
Kardar, M.3
-
16
-
-
33745163582
-
Probing Nature's knots: The folding pathway of a knotted homodimeric protein
-
Mallam AL, Jackson SE (2006) Probing Nature's knots: The folding pathway of a knotted homodimeric protein. J Mol Biol 359:1420-1436.
-
(2006)
J Mol Biol
, vol.359
, pp. 1420-1436
-
-
Mallam, A.L.1
Jackson, S.E.2
-
17
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace CN (1986) Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol 131:266-280.
-
(1986)
Methods Enzymol
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
18
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers JK, Pace CN, Scholtz JM (1995) Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding. Protein Sci 4:2138-2148.
-
(1995)
Protein Sci
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
19
-
-
44449146446
-
Knotted fusion proteins reveal unexpected possibilities in protein folding
-
Mallam AL, Onuoha SC, Grossmann JG, Jackson SE (2008) Knotted fusion proteins reveal unexpected possibilities in protein folding. Mol Cell 30:642-648.
-
(2008)
Mol Cell
, vol.30
, pp. 642-648
-
-
Mallam, A.L.1
Onuoha, S.C.2
Grossmann, J.G.3
Jackson, S.E.4
-
20
-
-
33846099591
-
The dimerization of an alpha/beta-knotted protein is essential for structure and function
-
Mallam AL, Jackson SE (2007) The dimerization of an alpha/beta-knotted protein is essential for structure and function. Structure 15:111-122.
-
(2007)
Structure
, vol.15
, pp. 111-122
-
-
Mallam, A.L.1
Jackson, S.E.2
-
21
-
-
0024358426
-
Mapping the transition state and pathway of protein folding by protein engineering
-
Matouschek A, Kellis JT, Jr, Serrano L, Fersht AR (1989) Mapping the transition state and pathway of protein folding by protein engineering. Nature 340:122-126.
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis Jr, J.T.2
Serrano, L.3
Fersht, A.R.4
-
22
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht AR, Matouschek A, Serrano L (1992) The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. J Mol Biol 224:771-782.
-
(1992)
J Mol Biol
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
23
-
-
13844255609
-
Folding studies on a knotted protein
-
Mallam AL, Jackson SE (2005) Folding studies on a knotted protein. J Mol Biol 346:1409-1421.
-
(2005)
J Mol Biol
, vol.346
, pp. 1409-1421
-
-
Mallam, A.L.1
Jackson, S.E.2
-
24
-
-
0014364651
-
-
Tanford C (1968) Protein denaturation. Part A. Characterisation of the denatured state; Part B. The transition from native to denatured state. Adv Protein Chem 23:121-282.
-
Tanford C (1968) Protein denaturation. Part A. Characterisation of the denatured state; Part B. The transition from native to denatured state. Adv Protein Chem 23:121-282.
-
-
-
-
25
-
-
0014718113
-
Protein denaturation. Part C. Theoretical models for the mechanism of denaturation
-
Tanford C (1970) Protein denaturation. Part C. Theoretical models for the mechanism of denaturation. Adv Protein Chem 24:1-95.
-
(1970)
Adv Protein Chem
, vol.24
, pp. 1-95
-
-
Tanford, C.1
-
27
-
-
0016711868
-
Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues
-
Brandts JF, Halvorson HR, Brennan M (1975) Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues. Biochemistry 14:4953-4963.
-
(1975)
Biochemistry
, vol.14
, pp. 4953-4963
-
-
Brandts, J.F.1
Halvorson, H.R.2
Brennan, M.3
-
28
-
-
0027049568
-
Cis proline mutants of ribonuclease A. II. Elimination of the slow-folding forms by mutation
-
Schultz DA, Schmid FX, Baldwin RL (1992) Cis proline mutants of ribonuclease A. II. Elimination of the slow-folding forms by mutation. Protein Sci 1:917-924.
-
(1992)
Protein Sci
, vol.1
, pp. 917-924
-
-
Schultz, D.A.1
Schmid, F.X.2
Baldwin, R.L.3
-
29
-
-
0028176281
-
Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect
-
Munoz V, Lopez EM, Jager M, Serrano L (1994) Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect. Biochemistry 33:5858-5866.
-
(1994)
Biochemistry
, vol.33
, pp. 5858-5866
-
-
Munoz, V.1
Lopez, E.M.2
Jager, M.3
Serrano, L.4
-
30
-
-
0025311245
-
Replacement of a cis proline simplifies the mechanism of ribonuclease T1 folding
-
Kiefhaber T, Grunert HP, Hahn U, Schmid FX (1990) Replacement of a cis proline simplifies the mechanism of ribonuclease T1 folding. Biochemistry 29:6475-6480.
-
(1990)
Biochemistry
, vol.29
, pp. 6475-6480
-
-
Kiefhaber, T.1
Grunert, H.P.2
Hahn, U.3
Schmid, F.X.4
-
31
-
-
0028870213
-
Non-prolyl cis-trans peptide bond isomerization as a rate-determining step in protein unfolding and refolding
-
Odefey C, Mayr LM, Schmid FX (1995) Non-prolyl cis-trans peptide bond isomerization as a rate-determining step in protein unfolding and refolding. J Mol Biol 245:69-78.
-
(1995)
J Mol Biol
, vol.245
, pp. 69-78
-
-
Odefey, C.1
Mayr, L.M.2
Schmid, F.X.3
-
32
-
-
0037126686
-
Proline cis-trans isomerization and protein folding
-
Wedemeyer WJ, Welker E, Scheraga HA (2002) Proline cis-trans isomerization and protein folding. Biochemistry 41:14637-14644.
-
(2002)
Biochemistry
, vol.41
, pp. 14637-14644
-
-
Wedemeyer, W.J.1
Welker, E.2
Scheraga, H.A.3
-
33
-
-
27544511752
-
Knots in globule and coil phases of a model polyethylene
-
Virnau P, Kantor Y, Kardar M (2005) Knots in globule and coil phases of a model polyethylene. J Am Chem Soc 127:15102-15106.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 15102-15106
-
-
Virnau, P.1
Kantor, Y.2
Kardar, M.3
-
34
-
-
36749095666
-
Spontaneous knotting of an agitated string
-
Raymer DM, Smith DE (2007) Spontaneous knotting of an agitated string. Proc Natl Acad Sci USA 104:16432-16437.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 16432-16437
-
-
Raymer, D.M.1
Smith, D.E.2
-
35
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
Daggett V, Fersht AR (2003) Is there a unifying mechanism for protein folding? Trends Biochem Sci 28:18-25.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
36
-
-
0037686252
-
The present view of the mechanism of protein folding
-
Daggett V, Fersht A (2003) The present view of the mechanism of protein folding. Nat Rev Mol Cell Biol 4:497-502.
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
37
-
-
33846362515
-
A comparison of the folding of two knotted proteins: YbeA and YibK
-
Mallam AL, Jackson SE (2007) A comparison of the folding of two knotted proteins: YbeA and YibK. J Mol Biol 366:650-665.
-
(2007)
J Mol Biol
, vol.366
, pp. 650-665
-
-
Mallam, A.L.1
Jackson, S.E.2
-
38
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
-
Jackson SE, Fersht AR (1991) Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition. Biochemistry 30:10428-10435.
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
|