Mapping of quantitative trait loci controlling heading date among rice cultivars in the northernmost region of Japan

Breeding Science

Volumn 58, Issue 4, 2008, Pages 367-373

  Fujino, Kenji ^a   Sekiguchi, Hiroshi ^a  

^a Agricultural Research Institute   (Japan)

Author keywords

Heading date; Quantitative trait loci; Rice

Indexed keywords

EID: 57649131138     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.367     Document Type: Article

References (49)

1. Cai, H.W. and H. Morishima (2002) QTL clusters reflect character associations in wild and cultivated rice. Theor. Appl. Genet. 104: 1217-1228.
2. Cuevas-Perez, F.E., E.P. Guimaraes, L.E. Berrio and D.I. Gonzalez (1992) Genetic base of irrigated rice in Latin America and the Caribbean, 1971 to 1989. Crop Sci. 32: 1054-1059.
3. Dilday, R.H. (1990) Contribution of ancestral lines in the development of new cultivars of rice. Crop Sci. 30: 905-911.
4. Doi, K., A. Yoshimura and N. Iwata (1998) RFLP mapping and QTL analysis of heading date and pollen sterility using backcross population between Oryza sativa L. and Oryza glaberrima Steud. Breed. Sci. 48: 395-399.
5. Doi, K., T. Izawa, T. Fuse, U. Yamanouchi, T. Kubo, Z. Shimatani, M.Yano and A. Yoshimura (2004) Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev. 18: 926-936.
6. Fujino, K. (2003) Photoperiod sensitivity gene controlling heading date in rice cultivars in the northernmost region of Japan. Euphytica 131: 97-103.
7. Fujino, K., H. Sekiguchi, T. Sato, H. Kiuchi, Y. Nonoue, Y. Takeuchi, T.Ando, S.Y. Lin and M. Yano (2004) Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.). Theor. Appl. Genet. 108: 794-799.
8. Fujino, K. and H. Sekiguchi (2005a) Mapping of QTLs conferring extremely early heading in rice (Oryza sativa L.). Theor. Appl. Genet. 111: 393-398.
9. Fujino, K. and H. Sekiguchi (2005b) Identification of QTLs conferring genetic variation for heading date among rice varieties at the northern-limit of rice cultivation. Breed. Sci. 55: 141-146.
10. Gu, X.Y. and M.E. Foley (2007) Epistatic interactions of three loci regulate flowering time under short and long daylengths in a backcross population of rice. Theor. Appl. Genet. 114: 745-754.
11. 2 population. Genetics 148: 479-494.
12. Hayama, R., S. Yokoi, S. Tamaki, M. Yano and K. Shimamoto (2003) Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422: 719-722.
13. Hayama, R. and G. Coupland (2004) The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol. 135: 677-684.
14. Ichitani, K., Y. Okumoto and T. Tanisaka (1998) Genetic analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1. Breed. Sci. 48: 51-57.
15. Izawa, T., Y. Takahashi and M. Yano (2003) Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Curr. Opin. Plant Biol. 6: 113-120.
16. Kojima, S., Y. Takahashi, Y. Kobayashi, L. Monna, T. Sasaki, T. Araki and M. Yano (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 10: 1096-1105.
17. Kosambi, D.D. (1944) The estimation of map distances from recombination value. Ann. Eugenet. 12: 172-175.
18. Lander, E.S., P. Green, J. Abrahamson, A. Barlow, M.J. Daly, S.E. Lincoln and L. Newburg (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
19. Li, Z.K., S.R.M. Pinson, J.W. Stansel and W.D. Park (1995) Identification of quantitative trait loci (QTLs) for heading date and plant heigth in cultivated rice (Oryza Sativa L.). Theor. Appl. Genet. 91: 374-381.
20. Lin, H.X., T. Yamamoto, T. Sasaki and M. Yano (2000) Characterization and detection of epistatic interactions of three QTLs, Hd1, Hd2 and Hd3, controlling heading date in rice using nearly isogenic lines. Theor. Appl. Genet. 101: 1021-1028.
21. Lin, H.X., M. Ashikari, U. Yamanouchi, T. Sasaki and M. Yano (2002) Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Breed. Sci. 52: 35-41.
22. Lin, H.X., Z.W. Liang, T. Sasaki and M. Yano (2003) Fine mapping and characterization of quantitative trait loci Hd4 and Hd5 controlling heading date in rice. Breed. Sci. 53: 51-59.
23. Lin, S.Y., T. Sasaki and M. Yano (1998) Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor. Appl. Genet. 96: 997-1003.
24. Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu (1996) Comparative mapping of QTLs for agronomic traits of rice across environments using a double-haploid population. Theor. Appl. Genet. 93: 1211-1217.
25. Lu, J.J. and T.T. Chang (1980) Rice in its temporal and spatial perspectives. In: Luh, B.S. (ed.) Rice: Production and utilization. AVI Publishing Co., Inc., Westport, CT, pp. 1-74.
26. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
27. Mei, H.W., Z.K. Li, Q.Y. Shu, L.B. Guo, Y.P. Wang, X.Q. Yu, C.S. Ying and L.J. Luo (2005) Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross populations. Theor. Appl. Genet. 110: 649-659.
28. Monna, L., H.X. Lin, S. Kojima, T. Sasaki and M. Yano (2002) Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice. Theor. Appl. Genet. 104: 772-778.
29. Murray, M.G. and W.F. Thompson (1980) Rapid isolation of high molecular weight plant DNA. Nucl. Acids. Res. 8: 4321-4325.
30. Nei, M. (1973) Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323.
31. Nonoue, Y., K. Fujino, Y. Hirayama, U. Yamanouchi, S.Y. Lin and M.Yano (2008) Detection of quantitative trait loci controlling extremely early heading in rice. Theor. Appl. Genet. 116: 715-722.
32. Okumoto, Y., K. Ichitani, H. Inoue and T. Tanisaka (1996) Photoperiod insensitivity gene essential to the varieties grown in the northern limit region of paddy rice (Oryza sativa L.) cultivation. Euphytica 92: 63-66.
33. Septiningsih, E.M., J. Prasetiyono, E. Lubis, T.H. Tai, T. Tjubaryat, S.Moeljopawiro and S.R. McCouch (2003) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor. Appl. Genet. 107: 1419-1432.
34. Takahashi, Y., A. Shomura, T. Sasaki and M. Yano (2001) Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. Proc. Natl. Acad. Sci. USA 98: 7922-7927.
35. Takeuchi, Y., S.Y. Lin, T. Sasaki and M. Yano (2003) Fine linkage mapping enables dissection of closely linked quantitative trait loci for seed dormancy and heading in rice. Theor. Appl. Genet. 107: 1174-1180.
36. Tanisaka, T., H. Inoue, S. Uozu and H. Yamagata (1992) Basic vegitative growth and photoperiod sensitivity of heading-time mutants induced in rice. Jpn J. Breed. 42: 657-668.
37. Thomson, M.J., T.H. Tai, A.M. McClung, X.H. Lai, M.E. Hinga, K.B.Lobos, Y. Xu, C.P. Martinez and S.R. McCouch (2003) Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor. Appl. Genet. 107: 479-493.
38. Uga, Y., Y. Nonoue, Z.W. Liang, H.X. Lin, S. Yamamoto, U. Yamanouchi and M. Yano (2007) Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar 'Nona Bokra'. Theor. Appl. Genet.114: 1457-1466.
39. Xiao, J., J. Li, L. Yuan and S.D. Tanksley (1995) Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140: 745-754.
40. Xiao, J., J. Li, L. Yuan and S.D. Tanksley (1996) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor. Appl. Genet. 92: 230-244.
41. Xiao, J., J. Li, S. Grandillo, S.N. Ahn, L. Yuan, S.D. Tanksley and S.R.McCouch (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150: 899-909.
42. 2 population of a cross between Oryza sativa and O. rufipogon. Theor. Appl. Genet. 98: 243-251.
43. Yamamoto, T., Y. Kuboki, S.Y. Lin, T. Sasaki and M. Yano (1998) Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theor. Appl. Genet. 97: 37-44.
44. Yamamoto, T., H.X. Lin, T. Sasaki and M. Yano (2000) Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice. Genetics 154: 885-891.
45. Yano, M., Y. Harushima, Y. Nagamura, N. Kurata, Y. Minobe and T.Sasaki (1997) Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map. Theor. Appl. Genet. 95: 1025-1032.
46. Yano, M., Y. Katayose, M. Ashikari, U. Yamanouchi, L. Monna, T.Fuse, T. Baba, K. Yamamoto, Y. Umehara, Y. Naganura and T.Sasaki (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473-2484.
47. Yano, M., S. Kojima, Y. Takahashi, H.X. Lin and T. Sasaki (2001) Genetic control of flowering time in rice, a short-day plant. Plant Physiol. 127: 1425-1429.
48. Yokoo, M. and F. Kikuchi (1977) Multiple allelism of the locus controlling heading time of rice, detected using close linkage with blast-resistance. Japan J. Breed. 21: 123-130.
49. Yu, S.B., J.X. Li, C.G. Xu, Y.F. Tan, X.H. Li and Q. Zhang (2002) Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice. Theor. Appl. Genet. 104: 619-625.