-
1
-
-
0033014719
-
Osmosensing by bacteria: Signals and membrane-based sensors
-
Wood, J. M. (1999) Osmosensing by bacteria: Signals and membrane-based sensors. Microbiol. Mol. Biol. Rev. 63, 230-262.
-
(1999)
Microbiol. Mol. Biol. Rev
, vol.63
, pp. 230-262
-
-
Wood, J.M.1
-
2
-
-
0023956072
-
Rapid response to osmotic upshift by osmoregulated genes in Escherichia coli and Salmonella typhimurium
-
Jovanovich, S. B., Martinell, M., Record, M. T., Jr., and Burgess, R. R. (1988) Rapid response to osmotic upshift by osmoregulated genes in Escherichia coli and Salmonella typhimurium. J. Bacteriol. 170, 534-539.
-
(1988)
J. Bacteriol
, vol.170
, pp. 534-539
-
-
Jovanovich, S.B.1
Martinell, M.2
Record Jr., M.T.3
Burgess, R.R.4
-
3
-
-
0036777602
-
Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays
-
Weber, A., and Jung, K. (2002) Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays. J. Bacteriol. 184, 5502-5507.
-
(2002)
J. Bacteriol
, vol.184
, pp. 5502-5507
-
-
Weber, A.1
Jung, K.2
-
4
-
-
0036714331
-
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
-
Hengge-Aronis, R. (2002) Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66, 373-395.
-
(2002)
Microbiol. Mol. Biol. Rev
, vol.66
, pp. 373-395
-
-
Hengge-Aronis, R.1
-
5
-
-
0023276469
-
Short chain fatty acids in human large intestine, portal, hepatic and venous blood
-
Cummings, J. H., Pomare, E. W., Branch, W. J., Naylor, C. P., and Macfarlane, G. T. (1987) Short chain fatty acids in human large intestine, portal, hepatic and venous blood. Gut 28, 1221-1227.
-
(1987)
Gut
, vol.28
, pp. 1221-1227
-
-
Cummings, J.H.1
Pomare, E.W.2
Branch, W.J.3
Naylor, C.P.4
Macfarlane, G.T.5
-
6
-
-
0032508705
-
Grain feeding and the dissemination of acid-resistant Escherichia coli from cattle
-
Diez-Gonzalez, F., Callaway, T. R., Kizoulis, M. G., and Russell, J. B. (1998) Grain feeding and the dissemination of acid-resistant Escherichia coli from cattle. Science 281, 1666-1668.
-
(1998)
Science
, vol.281
, pp. 1666-1668
-
-
Diez-Gonzalez, F.1
Callaway, T.R.2
Kizoulis, M.G.3
Russell, J.B.4
-
7
-
-
0023712118
-
Transient accumulation of potassium glutamate and its replacement by trehalose during adaptation of growing cells of Escherichia coli K-12 to elevated sodium chloride concentrations
-
Dinnbier, U., Limpinsel, E., Schmid, R., and Bakker, E. P. (1988) Transient accumulation of potassium glutamate and its replacement by trehalose during adaptation of growing cells of Escherichia coli K-12 to elevated sodium chloride concentrations. Arch. Microbiol. 150, 348-357.
-
(1988)
Arch. Microbiol
, vol.150
, pp. 348-357
-
-
Dinnbier, U.1
Limpinsel, E.2
Schmid, R.3
Bakker, E.P.4
-
8
-
-
29144477720
-
Timing of induction of osmotically controlled genes in Salmonella enterica Serovar Typhimurium, determined with quantitative real-time reverse transcription-PCR
-
Balaji, B., O'Connor, K., Lucas, J. R., Anderson, J. M., and Csonka, L. N. (2005) Timing of induction of osmotically controlled genes in Salmonella enterica Serovar Typhimurium, determined with quantitative real-time reverse transcription-PCR. Appl. Environ. Microbiol. 71, 8273-8283.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 8273-8283
-
-
Balaji, B.1
O'Connor, K.2
Lucas, J.R.3
Anderson, J.M.4
Csonka, L.N.5
-
9
-
-
1942534676
-
Osmo-regulation of bacterial transcription via poised RNA polymerase
-
Lee, S. J., and Gralla, J. D. (2004) Osmo-regulation of bacterial transcription via poised RNA polymerase. Mol. Cell 14, 153-162.
-
(2004)
Mol. Cell
, vol.14
, pp. 153-162
-
-
Lee, S.J.1
Gralla, J.D.2
-
10
-
-
33645735690
-
Potassium glutamate as a transcriptional inhibitor during bacterial osmoregulation
-
Gralla, J. D., and Vargas, D. R. (2006) Potassium glutamate as a transcriptional inhibitor during bacterial osmoregulation. EMBO J. 25, 1515-1521.
-
(2006)
EMBO J
, vol.25
, pp. 1515-1521
-
-
Gralla, J.D.1
Vargas, D.R.2
-
11
-
-
39049138771
-
Poising of Escherichia coli RNA polymerase and its release from the σ38 C-terminal tail for osmY transcription
-
Rosenthal, A. Z., Kim, Y., and Gralla, J. D. (2008) Poising of Escherichia coli RNA polymerase and its release from the σ38 C-terminal tail for osmY transcription. J. Mol. Biol. 376, 938-949.
-
(2008)
J. Mol. Biol
, vol.376
, pp. 938-949
-
-
Rosenthal, A.Z.1
Kim, Y.2
Gralla, J.D.3
-
12
-
-
0023219316
-
Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro
-
Leirmo, S., Harrison, C., Cayley, D. S., Burgess, R. R., and Record, M. T., Jr. (1987) Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro. Biochemistry 26, 2095-2101.
-
(1987)
Biochemistry
, vol.26
, pp. 2095-2101
-
-
Leirmo, S.1
Harrison, C.2
Cayley, D.S.3
Burgess, R.R.4
Record Jr., M.T.5
-
13
-
-
52649171469
-
General stress response signalling: Unwrapping transcription complexes by DNA relaxation via the σ38 C-terminal domain
-
Huo, Y. X., Rosenthal, A. Z., and Gralla, J. D. (2008) General stress response signalling: Unwrapping transcription complexes by DNA relaxation via the σ38 C-terminal domain. Mol. Microbiol. 70, 369-378.
-
(2008)
Mol. Microbiol
, vol.70
, pp. 369-378
-
-
Huo, Y.X.1
Rosenthal, A.Z.2
Gralla, J.D.3
-
14
-
-
0034170834
-
Invited review: Effects of diet shifts on Escherichia coli in cattle
-
Russell, J. B., Diez-Gonzalez, F., and Jarvis, G. N. (2000) Invited review: Effects of diet shifts on Escherichia coli in cattle. J. Dairy Sci. 83, 863-873.
-
(2000)
J. Dairy Sci
, vol.83
, pp. 863-873
-
-
Russell, J.B.1
Diez-Gonzalez, F.2
Jarvis, G.N.3
-
15
-
-
0036061941
-
Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity
-
Roe, A. J., O'Byrne, C., McLaggan, D., and Booth, I. R. (2002) Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity. Microbiology 148, 2215-2222.
-
(2002)
Microbiology
, vol.148
, pp. 2215-2222
-
-
Roe, A.J.1
O'Byrne, C.2
McLaggan, D.3
Booth, I.R.4
-
16
-
-
0035088098
-
Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response
-
Arnold, C. N., McElhanon, J., Lee, A., Leonhart, R., and Siegele, D. A. (2001) Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response. J. Bacteriol. 183, 2178-2186.
-
(2001)
J. Bacteriol
, vol.183
, pp. 2178-2186
-
-
Arnold, C.N.1
McElhanon, J.2
Lee, A.3
Leonhart, R.4
Siegele, D.A.5
-
17
-
-
42549115906
-
Regulation of transcription by acetate in Escherichia coli: In vivo and in vitro comparisons
-
Rosenthal, A. Z., Kim, Y., and Gralla, J. D. (2008) Regulation of transcription by acetate in Escherichia coli: In vivo and in vitro comparisons. Mol. Microbiol. 68, 907-917.
-
(2008)
Mol. Microbiol
, vol.68
, pp. 907-917
-
-
Rosenthal, A.Z.1
Kim, Y.2
Gralla, J.D.3
-
18
-
-
0031776135
-
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts
-
Record, M. T., Jr., Zhang, W., and Anderson, C. F. (1998) Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. Adv. Protein Chem. 51, 281-353.
-
(1998)
Adv. Protein Chem
, vol.51
, pp. 281-353
-
-
Record Jr., M.T.1
Zhang, W.2
Anderson, C.F.3
-
19
-
-
0009940455
-
Neutral Salts: The Generality of Their Effects on the Stability of Macromolecular Conformations
-
Vonhippel, P. H., and Wong, K. Y. (1964) Neutral Salts: The Generality of Their Effects on the Stability of Macromolecular Conformations. Science 145, 577-580.
-
(1964)
Science
, vol.145
, pp. 577-580
-
-
Vonhippel, P.H.1
Wong, K.Y.2
-
20
-
-
32044463112
-
Ion hydration: Implications for cellular function, polyelectrolytes, and protein crystallization
-
Collins, K. D. (2006) Ion hydration: Implications for cellular function, polyelectrolytes, and protein crystallization. Biophys. Chem. 119, 271-281.
-
(2006)
Biophys. Chem
, vol.119
, pp. 271-281
-
-
Collins, K.D.1
-
21
-
-
33645075455
-
Osmolyte-induced transcription:-35 region elements and recognition by σ38 (rpoS)
-
Rosenthal, A. Z., Hu, M., and Gralla, J. D. (2006) Osmolyte-induced transcription:-35 region elements and recognition by σ38 (rpoS). Mol. Microbiol. 59, 1052-1061.
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1052-1061
-
-
Rosenthal, A.Z.1
Hu, M.2
Gralla, J.D.3
-
22
-
-
0036009245
-
The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase
-
Colland, F., Fujita, N., Ishihama, A., and Kolb, A. (2002) The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase. Genes Cells 7, 233-247.
-
(2002)
Genes Cells
, vol.7
, pp. 233-247
-
-
Colland, F.1
Fujita, N.2
Ishihama, A.3
Kolb, A.4
-
23
-
-
0033565797
-
-
Colland, F., Fujita, N., Kotlarz, D., Bown, J. A., Meares, C. F., Ishihama, A., and Kolb, A. (1999) Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. EMBO J. 18, 4049-4059.
-
Colland, F., Fujita, N., Kotlarz, D., Bown, J. A., Meares, C. F., Ishihama, A., and Kolb, A. (1999) Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. EMBO J. 18, 4049-4059.
-
-
-
-
24
-
-
0037006985
-
Proteolytic DNA for mapping protein-DNA interactions
-
Schmidt, B. D., and Meares, C. F. (2002) Proteolytic DNA for mapping protein-DNA interactions. Biochemistry 41, 4186-4192.
-
(2002)
Biochemistry
, vol.41
, pp. 4186-4192
-
-
Schmidt, B.D.1
Meares, C.F.2
-
25
-
-
0032568456
-
Mapping the σ70 subunit contact sites on Escherichia coli RNA polymerase with a a70-conjugated chemical protease
-
Owens, J. T., Miyake, R., Murakami, K., Chmura, A. J., Fujita, N., Ishihama, A., and Meares, C. F. (1998) Mapping the σ70 subunit contact sites on Escherichia coli RNA polymerase with a a70-conjugated chemical protease. Proc. Natl. Acad. Sci. U.S.A. 95, 6021-6026.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 6021-6026
-
-
Owens, J.T.1
Miyake, R.2
Murakami, K.3
Chmura, A.J.4
Fujita, N.5
Ishihama, A.6
Meares, C.F.7
-
26
-
-
0024402712
-
Glutamate overcomes the salt inhibition of DNA polymerase III holoenzyme
-
Griep, M. A., and McHenry, C. S. (1989) Glutamate overcomes the salt inhibition of DNA polymerase III holoenzyme. J. Biol. Chem. 264, 11294-11301.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 11294-11301
-
-
Griep, M.A.1
McHenry, C.S.2
-
27
-
-
34249830163
-
Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface
-
Pegram, L. M., and Record, M. T., Jr. (2007) Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface. J. Phys. Chem. B 111, 5411-5417.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 5411-5417
-
-
Pegram, L.M.1
Record Jr., M.T.2
-
28
-
-
0033586750
-
Probing the interaction of T7 RNA polymerase with promoter
-
Sastry, S., and Ross, B. M. (1999) Probing the interaction of T7 RNA polymerase with promoter. Biochemistry 38, 4972-4981.
-
(1999)
Biochemistry
, vol.38
, pp. 4972-4981
-
-
Sastry, S.1
Ross, B.M.2
-
30
-
-
24144491655
-
Specific ion effects on the growth rates of Staphylococcus aureus and Pseudomonas aeruginosa
-
Lo Nostra, P., Ninham, B. W., Lo Nostro, A., Pesavento, G., Fratoni, L., and Baglioni, P. (2005) Specific ion effects on the growth rates of Staphylococcus aureus and Pseudomonas aeruginosa. Phys. Biol. 2, 1-7.
-
(2005)
Phys. Biol
, vol.2
, pp. 1-7
-
-
Lo Nostra, P.1
Ninham, B.W.2
Lo Nostro, A.3
Pesavento, G.4
Fratoni, L.5
Baglioni, P.6
-
31
-
-
0037308665
-
Bacterial RNA polymerases: The wholo story
-
Murakami, K. S., and Darst, S. A. (2003) Bacterial RNA polymerases: The wholo story. Curr. Opin. Struct. Biol. 13, 31-39.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 31-39
-
-
Murakami, K.S.1
Darst, S.A.2
-
32
-
-
0036469062
-
A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition
-
Kuznedelov, K., Minakhin, L., Niedziela-Majka, A., Dove, S. L., Rogulja, D., Nickels, B. E., Hochschild, A., Heyduk, T., and Severinov, K. (2002) A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition. Science 295, 855-857.
-
(2002)
Science
, vol.295
, pp. 855-857
-
-
Kuznedelov, K.1
Minakhin, L.2
Niedziela-Majka, A.3
Dove, S.L.4
Rogulja, D.5
Nickels, B.E.6
Hochschild, A.7
Heyduk, T.8
Severinov, K.9
-
33
-
-
15444366146
-
The interaction between σ70 and the β-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation
-
Nickels, B. E., Garrity, S. J., Mekler, V., Minakhin, L., Severinov, K., Ebright, R. H., and Hochschild, A. (2005) The interaction between σ70 and the β-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation. Proc. Natl. Acad. Sci U.S.A. 102, 4488-4493.
-
(2005)
Proc. Natl. Acad. Sci U.S.A
, vol.102
, pp. 4488-4493
-
-
Nickels, B.E.1
Garrity, S.J.2
Mekler, V.3
Minakhin, L.4
Severinov, K.5
Ebright, R.H.6
Hochschild, A.7
-
34
-
-
33750493565
-
RNA-mediated destabilization of the σ70 region 4/β flap interaction facilitates engagement of RNA polymerase by the Q antiterminator
-
Nickels, B. E., Roberts, C. W., Roberts, J. W., and Hochschild, A. (2006) RNA-mediated destabilization of the σ70 region 4/β flap interaction facilitates engagement of RNA polymerase by the Q antiterminator. Mol. Cell 24, 457-468.
-
(2006)
Mol. Cell
, vol.24
, pp. 457-468
-
-
Nickels, B.E.1
Roberts, C.W.2
Roberts, J.W.3
Hochschild, A.4
-
35
-
-
33646177461
-
Recombinant Thermus aquaticus RNA polymerase for structural studies
-
Kuznedelov, K., Lamour, V., Patikoglou, G., Chlenov, M., Darst, S. A., and Severinov, K. (2006) Recombinant Thermus aquaticus RNA polymerase for structural studies. J. Mol. Biol. 359, 110-121.
-
(2006)
J. Mol. Biol
, vol.359
, pp. 110-121
-
-
Kuznedelov, K.1
Lamour, V.2
Patikoglou, G.3
Chlenov, M.4
Darst, S.A.5
Severinov, K.6
-
36
-
-
0032568637
-
Mapping the promoter DNA sites proximal to conserved regions of σ70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex
-
Owens, J. T., Chmura, A. J., Murakami, K., Fujita, N., Ishihama, A., and Meares, C. F. (1998) Mapping the promoter DNA sites proximal to conserved regions of σ70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex. Biochemistry 37, 7670-7675.
-
(1998)
Biochemistry
, vol.37
, pp. 7670-7675
-
-
Owens, J.T.1
Chmura, A.J.2
Murakami, K.3
Fujita, N.4
Ishihama, A.5
Meares, C.F.6
-
37
-
-
0024474697
-
4 as a probe for lac promoter DNA melting and mechanism in vivo
-
4 as a probe for lac promoter DNA melting and mechanism in vivo. J. Biol. Chem. 264, 8074-8081.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 8074-8081
-
-
Sasse-Dwight, S.1
Gralla, J.D.2
|