Mapping the promoter DNA sites proximal to conserved regions of σ70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex

Biochemistry

Volumn 37, Issue 21, 1998, Pages 7670-7675

  Owens, Jeffrey T ^a   Chmura, Albert J ^a   Murakami, Katsuhiko ^b   Fujita, Nobuyuki ^b   Ishihama, Akira ^b   Meares, Claude F ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE;

ARTICLE; DNA CLEAVAGE; ENZYME BINDING; ESCHERICHIA COLI; GENE MAPPING; GENE STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; TRANSCRIPTION INITIATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CONSERVED SEQUENCE; CYSTEINE; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; HYDROLYSIS; LAC OPERON; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROMOTER REGIONS (GENETICS); SERINE; SIGMA FACTOR; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 0032568637     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980188n     Document Type: Article

References (52)

1. Burgess, R. R., Travers, A. A., Dunn, J. J., and Bautz, E. K. F. (1969) Nature (London) 221, 43-46.
2. Helmann, J. D., and Chamberlin, M. J. (1988) Annu. Rev. Biochem. 57, 839-872.
3. Gross, C. A., Lonetto, M., and Losick, R. (1992) in Transcriptional Regulation, pp 129-176, Cold Spring Harbor Laboratory Press, New York.
4. Ishihama, A. (1997) Nucleic Acids Mol. Biol. 11, 53-70.
5. Ishihama, A. (1991) Control of cell growth and division, pp 121-140, Springer-Verlag, Berlin.
6. Hawley, D. K., and McClure, W. R. (1983) Nucleic Acids Res. 11, 2237-2255.
7. Harley, C. B., and Reynolds, R. P. (1987) Nucleic Acids Res. 15, 2343-2361.
8. Lonetto, M., Gribskov, M., and Gross, C. A. (1992) J. Bacteriol. 174, 3843-3849.
9. Dombroski, A. J., Johnson, B. D., Lonetto, M., and Gross, C. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 8858-8862.
10. Siebenlist, U., Simpson, R. B., and Gilbert, W. (1980) Cell 20, 269-281.
11. Stefano, J. E., and Gralla, J. D. (1982) J. Biol. Chem. 257, 13924-13929.
12. Ayers, D. G., Auble, D. T., and deHaseth, P. L. (1989) J. Mol. Biol. 207, 749-756.
13. deHaseth, P. L., and Helmann, J. D. (1995) Mol. Microbiol. 16, 817-824.
14. Roberts, C. W., and Roberts, J. W. (1996) Cell 86, 495-501.
15. Murakami, K., Kimura, M., Owens, J. T., Meares, C. F., and Ishihama, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1709-1714.
16. Murakami, K., Owens, J. T., Belyaeva, T. A., Meares, C. F., Busby, S. J. W., and Ishihama, A. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 11274-11278.
17. Chenchick, A. A, Beabealashvilli, R., and Mirzabekov, A. D. (1981) FEBS Lett. 128, 46-50.
18. Kirkegaard, K., Buc, H., Spassky, A., and Wang, J. C. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 2544-2548.
19. Spassky, A. (1986) J. Mol. Biol. 188, 99-103.
20. Carpousis, A. J., and Gralla, J. D. (1985) J. Mol. Biol. 183, 165-177.
21. Straney, D. C., and Crothers, D. M. (1987) J. Mol. Biol. 193, 267-278.
22. Straney, D. C., and Crothers, D. M. (1987) J. Mol. Biol. 193, 279-292.
23. Kovacic, T. R. (1987) J. Biol. Chem. 262, 13654-13661.
24. Siebenlist, U. (1979) Nature 279, 651-652.
25. Kuwabara, M. D., and Sigman, D. S. (1987) Biochemistry 26, 7234-7238.
26. Buckle, M., and Buc, H. (1989) Biochemistry 28, 4388-4396.
27. Buckle, M., Geiselmann, J., Kolb, A., and Buc, H. (1991) Nucleic Acids Res. 19, 833-840.
28. Tagami, H., and Aiba, H. (1995) Nucleic Acids Res. 23, 599-606.
29. Kajitani, M., and Ishihama, A. (1983) Nucleic Acids Res. 11, 671-686.
30. Kajitani, M., and Ishihama, A. (1983) Nucleic Acids Res. 11, 3873-3888.
31. Igarashi, K., and Ishihama, A. (1991) Cell 65, 1015-1022.
32. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) in Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, New York.
33. Owens, J. T., Miyake, R., Murakami, K., Chmura, A. J., Fujita, N., Ishihama, A., and Meares, C. F. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, (In press).
34. Igarashi, K., and Ishihama, A. (1991) Cell 65, 1015-1022.
35. Kajitani, M., and Ishihama, A. (1983) Nucleic Acids Res. 11, 671-686.
36. Kajitani, M., and Ishihama, A. (1983) Nucleic Acids Res. 11, 3873-3888.
37. Fujita, N., Nomura, T., and Ishihama, A. (1987) J. Biol. Chem. 262, 1855-1859.
38. Kusano, S., Ding, Q., Fujita, N., and Ishihama, A. (1996) J. Biol. Chem. 271, 1998-2004.
39. Fujita, N., and Ishihama, A. (1996) Methods Enzymol. 273, 121-130.
40. Love, R. A., Villafranca, J. E., Aust, R. M., Nakamura, K. K., Jue, R. A., Major, J. G., Jr., Radhakrishnan, R., and Butler, W. F. (1993) Biochemistry 32, 10950-10959.
41. Siegele, D. A., Hu, J. C., Walter, W. A., and Gross, C. A. (1989) J. Mol. Biol. 206, 591-603.
42. Waldburger, C., Gardella, T., Wong, R., and Susskind, M. M. (1990) J. Mol. Biol. 215, 267-276.
43. Juang, Y.-L., and Helmann, J. D. (1994) J. Mol. Biol. 235, 1470-1488.
44. Juang, Y.-L., and Helmann, J. D. (1995) Biochemistry 34, 8465-8473.
45. Wilson, C., and Dombroski, A. J. (1997) J. Mol. Biol. 267, 60-74.
46. Reddy, B. V. B., Gopal, V., and Chatterji, D. (1997) J. Biomol. Struct. Dyn. 14, 447-419.
47. Pai, K. S., Bussiere, D. E., Wang, F. G., White, S. W., and Bastia D. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 10647-10652.
48. Gardella, T., Moyle, H., and Susskind, M. M. (1989) J. Mol. Biol. 206, 579-590.
49. Dombroski, A. J., Walter, W. A., Record, T. M., Siegele, D. A., and Gross, C. A. (1992) Cell 70, 501-512.
50. Ring, B. Z., Yarnell, W. S., and Roberts, J. W. (1996) Cell 86, 485-493.
51. Malhotra, A., Severinova, E., and Darst, S. A. (1996) Cell 87, 127-136.
52. Severinov, K., Fenyö, D., Severinova, E., Mustaev, A., Chait, B. T., Goldfarb, A., and Darst, S. (1994) J. Biol. Chem. 269, 20826-20828.