Phylogeography of an estuarine mysid, Neomysis integer (Crustacea, Mysida), along the north-east Atlantic coasts

Journal of Biogeography

Volumn 36, Issue 1, 2009, Pages 39-54

  Remerie, Thomas ^a   Vierstraete, Andy ^a   Weekers, Peter H H ^a   Vanfleteren, Jacques R ^a   Vanreusel, Ann ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

Brackish water; COI; Crustacea; Estuary; Glacial refugium; mtDNA; Mysid; North east Atlantic Ocean; Phylogeography

Indexed keywords

BRACKISH WATER; CRUSTACEAN; ESTUARINE ENVIRONMENT; EVOLUTION; GENETIC ANALYSIS; GENETIC VARIATION; GLACIATION; HISTORY; INTRAPOPULATION VARIATION; LAST GLACIAL MAXIMUM; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; PLEISTOCENE; POLYMORPHISM; POPULATION DISTRIBUTION;

ATLANTIC COAST [EUROPE]; ATLANTIC COAST [SPAIN]; ATLANTIC OCEAN; BALTIC SEA; ENGLISH CHANNEL; EURASIA; EUROPE; NORTH SEA; SOUTHERN EUROPE; SPAIN; WESTERN EUROPE;

CRUSTACEA; MYSIDA; NEOMYSIS INTEGER;

EID: 57549093830     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2008.01970.x     Document Type: Article

References (92)

1. Althoff, D.M. Pellmyr, O. (2002) Examining genetic structure in a bogus yucca moth: a sequential approach to phylogeography. Evolution, 56, 1632 1643.
2. Audzijonyte, A. Väinölä, R. (2006) Phylogeographic analyses of a circumarctic coastal and boreal lacustrine mysid crustacean, and evidence of fast post-glacial mtDNA rates. Molecular Ecology, 15, 3287 3301.
3. Avise, J.C. (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge.
4. Avise, J.C., Walker, D. Johns, G.C. (1998) Speciation durations and Pleistocene effects on vertebrate phylogeography. Proceedings of the Royal Society B: Biological Sciences, 265, 1707 1712.
5. Beyst, B., Buysse, D., Dewicke, A. Mees, J. (2001) Surf zone hyperbenthos of Belgian sandy beaches: seasonal patterns. Estuarine, Coastal and Shelf Science, 53, 877 895.
6. Bilton, D.T., Pauls, J. Bishop, J.D.D. (2002) Dispersal, genetic differentiation and speciation in estuarine organisms. Estuarine, Coastal and Shelf Sciences, 55, 937 952.
7. Bohonak, A.J. (2002) IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity, 93, 154 155.
8. Breton, S., Dufresne, F., Desrosiers, G. Blier, P.U. (2003) Population structure of two northern hemisphere polychaetes, Neanthes virens and Hediste diversicolor (Nereididae), with different life-history traits. Marine Biology, 142, 707 715.
9. Burridge, C.P., Hurt, A.C., Farrington, L.W., Coutin, P.C. Austin, C.M. (2004) Stepping stone gene flow in an estuarine-dwelling sparid from south-east Australia. Journal of Fish Biology, 64, 805 819.
10. Burridge, C.P., Craw, D., Fletcher, D. Waters, J.M. (2008) Geological dates and molecular rates: fish DNA sheds light on time dependency. Molecular Biology and Evolution, 25, 624 633.
11. Chevolot, M., Hoarau, G., Rijnsdorp, A.D., Stam, W.T. Olsen, J.L. (2006) Phylogeography and population structure of thornback rays (Raja clavata L., Rajidae). Molecular Ecology, 15, 3693 3705.
12. Clement, M., Posada, D. Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
13. Consuegra, S., De Leaniz, C.G., Serdio, A., Morales, M.G., Straus, L.G., Knox, D. Verspoor, E. (2002) Mitochondrial DNA variation in Pleistocene and modern Atlantic salmon from the Iberian glacial refugium. Molecular Ecology, 11, 2037 2048.
14. Coyer, J.A., Peters, A.F., Stam, W.T. Olsen, J.L. (2003) Post-ice age recolonization and differentiation of Fucus serratus L. (Fucaceae: Phaeophyta) populations in Northern Europe. Molecular Ecology, 12, 1817 1829.
15. Crandall, K.A. (1996) Multiple interspecies transmissions of human and simian T-cell leukaemia/lymphoma virus type I sequences. Molecular Biology and Evolution, 13, 115 131.
16. Crandall, K.A. Templeton, A.R. (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959 969.
17. Cunha, M.R., Sorbe, J.C. Moreira, M.H. (1999) Spatial and seasonal changes of brackish peracaridan assemblages and their relation to some environmental variables in two tidal channels of the Ria de Aveiro (NW Portugal). Marine Ecology Progress Series, 190, 69 87.
18. Dahlgren, T.G., Weinberg, J.R. Halanych, K.M. (2000) Phylogeography of the ocean quahog (Arctica islandica): influences of paleoclimate on genetic diversity and species range. Marine Biology, 137, 487 495.
19. Drake, P., Arias, A.M., Baldó, F., Cuesta, J.A., Rodríguez, A., Silva-García, A., Sobrino, A., García-González, D. Fernández-Delgado, C. (2002) Spatial and temporal variation of the nekton and hyperbenthos from a temperate European estuary with regulated freshwater inflow. Estuaries, 25, 451 468.
20. Edmands, S. (2001) Phylogeography of the intertidal copepod Tigriopus californicus reveals substantially reduced population differentiation at northern latitudes. Molecular Ecology, 10, 1743 1750.
21. Excoffier, L., Smouse, P. Quattro, J. (1992) Analyses of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
22. Filatov, D.A., Moneger, F., Negrutiu, I. Charlesworth, D. (2000) Low variability in a Y-linked plant gene and its implications for Y-chromosome evolution. Nature, 404, 388 390.
23. Fockedey, N. Mees, J. (1999) Feeding of the hyperbenthic mysid Neomysis integer in the maximum turbidity zone of the Elbe, Westerschelde and Gironde estuaries. Journal of Marine Systems, 22, 207 228.
24. Folmer, O., Black, M., Hoeh, W., Lutz, R. Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294 297.
25. Frenzel, B., Pécsi, M. Velichko, A.A. (1992) Atlas of paleoclimates and paleoenvironments of the Northern Hemisphere: Late Pleistocene-Holocene. Geographic Research Institute, Hungarian Academy of Science, Budapest.
26. Fu, Y.X. (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915 925.
27. Fukatsu, T. (1999) Acetone preservation: a practical technique for molecular analysis. Molecular Ecology, 8, 1935 1945.
28. García-Marín, J.L., Utter, F.M. Pla, C. (1999) Postglacial colonization of brown trout in Europe based on distribution allozyme variants. Heredity, 82, 46 56.
29. Gysels, E.S., Hellemans, B., Pampoulie, C. Volckaert, F.A.M. (2004a) Phylogeography of the common goby, Pomatoschistus microps, with particular emphasis on the colonization of the Mediterranean and the North Sea. Molecular Ecology, 13, 403 417.
30. Gysels, E.S., Hellemans, B., Patarnello, T. Volckaert, F.A.M. (2004b) Current and historic gene flow of the sand goby Pomatoschistus minutus on the European Continental Shelf and in the Mediterranean Sea. Biological Journal of the Linnean Society, 83, 561 576.
31. Hewitt, G.M. (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247 276.
32. Hewitt, G.M. (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87 112.
33. Hewitt, G.M. (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913.
34. Hewitt, G.M. (2001) Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Molecular Ecology, 10, 537 549.
35. Hewitt, G.M. (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 183 195.
36. Ho, S.Y.W. Larson, G. (2006) Molecular clocks: when times are a-changin'. Trends in Genetics, 22, 79 83.
37. Ho, S.Y.W., Phillips, M.J., Cooper, A. Drummond, A.J. (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561 1568.
38. Hoarau, G., Coyer, J.A., Veldsink, J.H., Stam, W.T. Olsen, J.L. (2007) Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus. Molecular Ecology, 16, 3606 3616.
39. Hoffman, E.A. Blouin, M.S. (2004) Historical data refute range contraction as cause of low genetic diversity in isolated frog populations. Molecular Ecology, 13, 271 276.
40. Hostens, K. Mees, J. (1999) The mysid-feeding guild of demersal fishes in the brackish zone of the Westerschelde estuary. Journal of Fish Biology, 55, 704 719.
41. Ibrahim, K.M., Nichols, R.A. Hewitt, G.M. (1996) Spatial patterns of genetic variation generated by different forms of dispersal during range expansion. Heredity, 77, 282 291.
42. Jolly, M.T., Jollivet, D., Gentil, F., E Thiébaut, E. Viard, F. (2005) Sharp genetic break between Atlantic and English Channel populations of the polychaete Pectinaria koreni, along the North coast of France. Heredity, 94, 23 32.
43. Jolly, M.T., Viard, F., Gentil, F., Thiébaut, E. Jollivet, D. (2006) Comparative phylogeography of two coastal polychaete tubeworms in the Northeast Atlantic supports shared history and vicariant events. Molecular Ecology, 15, 3481 3482.
44. Kelly, D.W., MacIsaac, H.J. Heath, D.D. (2006) Vicariance and dispersal effects on phylogeographic structure and speciation in a widespread estuarine invertebrate. Evolution, 60, 257 267.
45. Kinne, O. (1955) Neomysis vulgaris Thompson, eine autökologisch- biologische Studie. Biologisches Zentralblatt, 74, 160 202.
46. Knowles, L.L., Futuyma, D.J., Eanes, W.F. Rannala, B. (1999) Insights into speciation mode from historical demography in the phytophagous beetle Ophraella. Evolution, 53, 1846 1856.
47. Knowlton, N., Weight, L.A., Solorzano, L.A., Mills, D.K. Berningham, E. (1993) Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science, 260, 1629 1632.
48. Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Pääbo, S., Villablanca, F.X. Wilson, A.C. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences USA, 86, 6196 6200.
49. Lacroix, G., Ruddick, K., Ozer, J. Lancelot, C. (2004) Modelling the impact of the Scheldt and Rhine/Meuse plumes on the salinity distribution in Belgian waters (southern North Sea). Journal of Sea Research, 52, 149 163.
50. Lericolais, G., Auffret, J.P. Bourillet, J.F. (1995) The Quaternary Channel River: seismic stratigraphy of its palaeo-valleys and deeps. Journal of Quaternary Science, 18, 245 260.
51. Lesica, P. Allendorf, F.W. (1995) When are peripheral populations valuable for conservation? Conservation Biology, 9, 753 760.
52. Luttikhuizen, P.C., Drent, J. Baker, A.J. (2003) Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal. Molecular Ecology, 12, 2215 2229.
53. Maddison, W.P. (1997) Gene trees in species trees. Systematic Biology, 46, 523 536.
54. Maltagliati, F. (2002) Genetic monitoring of brackish-water populations: the Mediterranean toothcarp Asphanius fasciatus (Cyprinodontidae) as a model. Marine Ecology Progress Series, 235, 257 262.
55. Marko, P.B. (2004) 'What's larvae got to do with it?' Disparate patterns of post-glacial population structure in two benthic marine gastropods with identical dispersal potential. Molecular Ecology, 13, 597 611.
56. Maruyama, T. Birky, C.W., Jr. (1991) Effects of periodic selection on gene diversity in organelle genomes and other systems without recombination. Genetics, 127, 449 451.
57. Mauchline, J. (1971) The biology of Neomysis integer. Journal of the Marine Biological Association of the UK, 51, 347 354.
58. Mauchline, J. (1980) The biology of mysids and euphausiids. Advances in Marine Biology, Vol. 18. Academic Press, London.
59. Mees, J., Cattrijsse, A. Hamerlynck, O. (1993) Distribution and abundance of shallow water hyperbenthic mysids (Crustacea, Mysidacea) and euphausiids (Crustacea, Euphausiacea) in the Voordelta and the Westerschelde, south-west Netherlands. Cahier Biologique Marine, 34, 165 186.
60. Mees, J., Abdulkerim, Z. Hamerlynck, O. (1994) Life history, growth and production of Neomysis integer in the Westerschelde estuary (SW Netherlands). Marine Ecology Progress Series, 109, 43 57.
61. Mees, J., Fockedey, N. Hamerlynck, O. (1995) Comparative study of the hyperbenthos of three European estuaries. Hydrobiologia, 311, 153 174.
62. Meland, M.Y., Jansen, E. Elderfield, H. (2005) Constraints on SST estimates for the northern North Atlantic/Nordic Seas during the LGM. Quaternary Science Reviews, 24, 835 852.
63. Nei, M. (1987) Molecular evolutionary genetics. Columbia University Press, New York.
64. Nichols, R. (2001) Gene trees and species trees are not the same. Trends in Ecology and Evolution, 16, 358 364.
65. Nichols, R.A. Hewitt, G.M. (1994) The genetic consequences of long distance dispersal during colonization. Heredity, 72, 312 317.
66. Olsen, J.L., Stam, W.T., Coyer, J.A., Reusch, T.B.H., Billingham, M., Boström, C., Calvert, E., Christie, H., Granger, S., La Lumière, R., Milchakova, N., Oudot-Le Secq, M.-P., Procaccini, G., Sanjabi, B., Serrão, E., Veldsink, J., Iddicombe, S. Wyllie-Echeverria, S. (2004) North Atlantic phylogeography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology, 13, 1923 1941.
67. Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K. Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proceedings of the National Academy of Sciences USA, 86, 2766 2770.
68. Posada, D. Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
69. Posada, D., Crandall, K.A. Templeton, A.R. (2000) GEODIS: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
70. Provan, J., Wattier, R.A. Maggs, C.A. (2005) Phylogeography of the red seaweed Palmaria palmata reveals a Pleistocene marine glacial refugium in the English Channel. Molecular Ecology, 14, 793 805.
71. Remerie, T. (2005) Molecular diversity and population structure of two mysid taxa along European coasts. PhD Thesis, Ghent University, Ghent.
72. Remerie, T., Gysels, E., Vierstraete, A., Vanfleteren, J. Vanreusel, A. (2006) Evidence of genetic differentiation of the brackish water mysid Neomysis integer (Crustacea, Mysida) concordant with Pleistocene glaciations. Vie et Milieu, 56, 15 22.
73. Rice, W.R. (1989) Analyzing tables of statistical tests. Evolution, 43, 223 225.
74. Rogers, A.R. (1995) Genetic evidence for a Pleistocene population explosion. Evolution, 49, 608 615.
75. Schneider, S., Roessli, D. Excoffier, L. (2000) Arlequin: a software for population genetics data analysis, version 2.00. University of Geneva, Geneva.
76. Schubart, C.D., Diesel, R. Blair Hedges, S. (1998) Rapid evolution to terrestrial life in Jamaican crabs. Nature, 393, 363 365.
77. Slatkin, M. Hudson, R.R. (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555 562.
78. Sunnucks, P., Wilson, A.C.C., Beheregaray, L.B., Zenger, K., French, J. Taylor, A.C. (2000) SSCP is not so difficult: the application and utility of single-stranded conformation polymorphisms in evolutionary biology and molecular ecology. Molecular Ecology, 9, 1699 1710.
79. Swofford, D.L. (1998) PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sinauer Associates, Sunderland, MA.
80. Taberlet, P., Fumagalli, L., Wust-Saucy, A.-G. Cosson, J.-F. (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453 464.
81. Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 589.
82. Tamura, K. Nei, M. (1993) Estimations of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512 526.
83. Templeton, A.R. (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
84. Templeton, A.R. (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
85. Templeton, A.R., Boerwinkle, E. Sing, C.F. (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343 351.
86. Templeton, A.R., Routman, E. Phillips, C.A. (1995) Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767 782.
87. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876 4882.
88. Verspoor, E., McCarthy, E.M. Knox, D. (1999) The phylogeography of European Atlantic salmon (Salmo salar L.) based on RFLP analysis of the ND1/16S RNA region of the mtDNA. Biological Journal of the Linnean Society, 68, 129 146.
89. Virgilio, M. Abbiati, M. (2004) Habitat discontinuity and genetic structure in populations of the estuarine species Hediste diversicolor (Polychaeta: Nereididae). Estuarine, Coastal and Shelf Science, 61, 361 367.
90. Vlasblom, A.G. Elgershuizen, J.H.B.W. (1977) Survival and oxygen consumption of Praunus flexuosus and Neomysis integer, and embryonic development of the latter species, in different temperature and chlorinity combinations. Netherlands Journal of Sea Research, 11, 305 315.
91. Wilke, T. Davis, G.M. (2000) Infraspecific mitochondrial sequence diversity in Hydrobia ulvae and Hydrobia ventrosa (Hydrobiidae: Rissoidea: Gastropoda): do their different life histories affect biogeographic patterns and gene flow? Biological Journal of the Linnean Society, 70, 89 105.
92. Wilke, T. Pfenninger, M. (2002) Separating historic events from recurrent processes in cryptic species, phylogeography of mud snails (Hydrobia ssp.). Molecular Ecology, 11, 1439 1451.