-
1
-
-
0345733992
-
Differential modes of recognition in N peptide-boxB complexes
-
Austin, R. J., T. Xia, J. Ren, T. T. Takahashi, and R. W. Roberts. 2003. Differential modes of recognition in N peptide-boxB complexes. Biochemistry 42:14957-14967.
-
(2003)
Biochemistry
, vol.42
, pp. 14957-14967
-
-
Austin, R.J.1
Xia, T.2
Ren, J.3
Takahashi, T.T.4
Roberts, R.W.5
-
2
-
-
0242592065
-
Achieving specificity in selected and wild-type N peptide-RNA complexes: The importance of discrimination against noncognate RNA targets
-
Barrick, J. E., and R. W. Roberts. 2003. Achieving specificity in selected and wild-type N peptide-RNA complexes: the importance of discrimination against noncognate RNA targets. Biochemistry 42:12998-13007.
-
(2003)
Biochemistry
, vol.42
, pp. 12998-13007
-
-
Barrick, J.E.1
Roberts, R.W.2
-
3
-
-
0034854609
-
Selection of RNA-binding peptides using mRNA-peptide fusions
-
Barrick, J. E., T. T. Takahashi, A. Balakin, and R. W. Roberts. 2001. Selection of RNA-binding peptides using mRNA-peptide fusions. Methods 23:287-293.
-
(2001)
Methods
, vol.23
, pp. 287-293
-
-
Barrick, J.E.1
Takahashi, T.T.2
Balakin, A.3
Roberts, R.W.4
-
4
-
-
28344450939
-
Arginine-rich motifs present multiple interfaces for specific binding by RNA
-
Bayer, T. S., L. N. Booth, S. M. Knudsen, and A. D. Ellington. 2005. Arginine-rich motifs present multiple interfaces for specific binding by RNA. RNA 11:1848-1857.
-
(2005)
RNA
, vol.11
, pp. 1848-1857
-
-
Bayer, T.S.1
Booth, L.N.2
Knudsen, S.M.3
Ellington, A.D.4
-
5
-
-
0031916834
-
Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex
-
Cai, Z., A. Gorin, R. Frederick, X. Ye, W. Hu, A. Majumdar, A. Kettani, and D. J. Patel. 1998. Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex. Nat. Struct. Biol. 5:203-212.
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 203-212
-
-
Cai, Z.1
Gorin, A.2
Frederick, R.3
Ye, X.4
Hu, W.5
Majumdar, A.6
Kettani, A.7
Patel, D.J.8
-
6
-
-
0026350074
-
Arginine-mediated RNA recognition: The arginine fork
-
Calnan, B. J., B. Tidor, S. Biancalana, D. Hudson, and A. D. Frankel. 1991. Arginine-mediated RNA recognition: the arginine fork. Science 252:1167-1171.
-
(1991)
Science
, vol.252
, pp. 1167-1171
-
-
Calnan, B.J.1
Tidor, B.2
Biancalana, S.3
Hudson, D.4
Frankel, A.D.5
-
7
-
-
0027968034
-
Comparative molecular biology of lambdoid phages
-
Campbell, A. 1994. Comparative molecular biology of lambdoid phages. Annu. Rev. Microbiol. 48:193-222.
-
(1994)
Annu. Rev. Microbiol
, vol.48
, pp. 193-222
-
-
Campbell, A.1
-
8
-
-
22544441328
-
Comparative genomics and evolution of the tailed-bacteriophages
-
Casjens, S. R. 2005. Comparative genomics and evolution of the tailed-bacteriophages. Curr. Opin. Microbiol. 8:451-458.
-
(2005)
Curr. Opin. Microbiol
, vol.8
, pp. 451-458
-
-
Casjens, S.R.1
-
9
-
-
0038813728
-
Structural mimicry in the phage φ21 N peptide-boxB RNA complex
-
Cilley, C. D., and J. R. Williamson. 2003. Structural mimicry in the phage φ21 N peptide-boxB RNA complex. RNA 9:663-676.
-
(2003)
RNA
, vol.9
, pp. 663-676
-
-
Cilley, C.D.1
Williamson, J.R.2
-
10
-
-
0031024660
-
Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE)
-
Cilley, C. D., and J. R. Williamson. 1997. Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE). RNA 3:57-67.
-
(1997)
RNA
, vol.3
, pp. 57-67
-
-
Cilley, C.D.1
Williamson, J.R.2
-
11
-
-
44949184659
-
Bacteriophage P22 antitermination boxB sequence requirements are complex and overlap with those of λ
-
Cocozaki, A. I., I. R. Ghattas, and C. A. Smith. 2008. Bacteriophage P22 antitermination boxB sequence requirements are complex and overlap with those of λ. J. Bacteriol. 190:4263-4271.
-
(2008)
J. Bacteriol
, vol.190
, pp. 4263-4271
-
-
Cocozaki, A.I.1
Ghattas, I.R.2
Smith, C.A.3
-
12
-
-
33846329120
-
A new look at bacteriophage λ genetic networks
-
Court, D. L., A. B. Oppenheim, and S. L. Adhya. 2007. A new look at bacteriophage λ genetic networks. J. Bacteriol. 189:298-304.
-
(2007)
J. Bacteriol
, vol.189
, pp. 298-304
-
-
Court, D.L.1
Oppenheim, A.B.2
Adhya, S.L.3
-
13
-
-
0015185520
-
A minor Q-independent pathway for the expression of the late genes in bacteriophage lambda
-
Dambly, C., and M. Couturier. 1971. A minor Q-independent pathway for the expression of the late genes in bacteriophage lambda. Mol. Gen. Genet. 113:244-250.
-
(1971)
Mol. Gen. Genet
, vol.113
, pp. 244-250
-
-
Dambly, C.1
Couturier, M.2
-
14
-
-
23944490117
-
Missense meanderings in sequence space: A biophysical view of protein evolution
-
DePristo, M. A., D. M. Weinreich, and D. L. Hartl. 2005. Missense meanderings in sequence space: a biophysical view of protein evolution. Nat. Rev. Genet. 6:678-687.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 678-687
-
-
DePristo, M.A.1
Weinreich, D.M.2
Hartl, D.L.3
-
15
-
-
0024394611
-
Effects of all single base substitutions in the loop of boxB on antitermination of transcription by bacteriophage λ's N protein
-
Doelling, J. H., and N. C. Franklin. 1989. Effects of all single base substitutions in the loop of boxB on antitermination of transcription by bacteriophage λ's N protein. Nucleic Acids Res. 17:5565-5577.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 5565-5577
-
-
Doelling, J.H.1
Franklin, N.C.2
-
16
-
-
0032727991
-
Themes in RNA-protein recognition
-
Draper, D. E. 1999. Themes in RNA-protein recognition. J. Mol. Biol. 293:255-270.
-
(1999)
J. Mol. Biol
, vol.293
, pp. 255-270
-
-
Draper, D.E.1
-
17
-
-
0032577365
-
Continuity in evolution: On the nature of transitions
-
Fontana, W., and P. Schuster. 1998. Continuity in evolution: on the nature of transitions. Science 280:1451-1455.
-
(1998)
Science
, vol.280
, pp. 1451-1455
-
-
Fontana, W.1
Schuster, P.2
-
18
-
-
2442595009
-
Morphing molecular specificities between Arm-peptide and NUT-RNA in the antitermination complexes of bacteriophages λ and P22
-
Franklin, N. C. 2004. Morphing molecular specificities between Arm-peptide and NUT-RNA in the antitermination complexes of bacteriophages λ and P22. Mol. Microbiol. 52:815-822.
-
(2004)
Mol. Microbiol
, vol.52
, pp. 815-822
-
-
Franklin, N.C.1
-
19
-
-
0027288664
-
Clustered arginine residues of bacteriophage λ N protein are essential to antitermination of transcription, but their locale cannot compensate for boxB loop defects
-
Franklin, N. C. 1993. Clustered arginine residues of bacteriophage λ N protein are essential to antitermination of transcription, but their locale cannot compensate for boxB loop defects. J. Mol. Biol. 231:343-360.
-
(1993)
J. Mol. Biol
, vol.231
, pp. 343-360
-
-
Franklin, N.C.1
-
20
-
-
0022354895
-
N transcription antitermination proteins of bacteriophages λ, φ21 and P22
-
Franklin, N. C. 1985. "N" transcription antitermination proteins of bacteriophages λ, φ21 and P22. J. Mol. Biol. 181:85-91.
-
(1985)
J. Mol. Biol
, vol.181
, pp. 85-91
-
-
Franklin, N.C.1
-
21
-
-
0022368688
-
Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages λ, φ21 and P22
-
Franklin, N. C. 1985. Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages λ, φ21 and P22. J. Mol. Biol. 181:75-84.
-
(1985)
J. Mol. Biol
, vol.181
, pp. 75-84
-
-
Franklin, N.C.1
-
22
-
-
0024671716
-
Overexpression of N antitermination proteins of bacteriophages φ, 21, and P22: Loss of N protein specificity
-
Franklin, N. C., and J. H. Doelling. 1989. Overexpression of N antitermination proteins of bacteriophages φ, 21, and P22: loss of N protein specificity. J. Bacteriol. 171:2513-2522.
-
(1989)
J. Bacteriol
, vol.171
, pp. 2513-2522
-
-
Franklin, N.C.1
Doelling, J.H.2
-
23
-
-
0029868515
-
Selection of RNA-binding peptides in vivo
-
Harada, K., S. S. Martin, and A. D. Frankel. 1996. Selection of RNA-binding peptides in vivo. Nature 380:175-179.
-
(1996)
Nature
, vol.380
, pp. 175-179
-
-
Harada, K.1
Martin, S.S.2
Frankel, A.D.3
-
24
-
-
0017192297
-
Specificity of genetic elements controlling regulation of early functions in temperate bacteriophages
-
Hilliker, S., and D. Botstein. 1976. Specificity of genetic elements controlling regulation of early functions in temperate bacteriophages. J. Mol. Biol. 106:537-566.
-
(1976)
J. Mol. Biol
, vol.106
, pp. 537-566
-
-
Hilliker, S.1
Botstein, D.2
-
25
-
-
0030030533
-
Smoothness within ruggedness: The role of neutrality in adaptation
-
Huynen, M. A., P. F. Stadler, and W. Fontana. 1996. Smoothness within ruggedness: the role of neutrality in adaptation. Proc. Natl. Acad. Sci. USA 93:397-401.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 397-401
-
-
Huynen, M.A.1
Stadler, P.F.2
Fontana, W.3
-
26
-
-
24044528558
-
Evolvability of the mode of peptide binding by an RNA
-
Iwazaki, T., X. Li, and K. Harada. 2005. Evolvability of the mode of peptide binding by an RNA. RNA 11:1364-1373.
-
(2005)
RNA
, vol.11
, pp. 1364-1373
-
-
Iwazaki, T.1
Li, X.2
Harada, K.3
-
27
-
-
25444481051
-
Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity
-
Johnson, N. P., W. A. Baase, and P. H. von Hippel. 2005. Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity. J. Biol. Chem. 280:32177-32183.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 32177-32183
-
-
Johnson, N.P.1
Baase, W.A.2
von Hippel, P.H.3
-
28
-
-
0025912824
-
Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics
-
Kimura, M. 1991. Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics. Proc. Natl. Acad. Sci. USA 88:5969-5973.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5969-5973
-
-
Kimura, M.1
-
29
-
-
0024434420
-
Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif
-
Lazinski, D., E. Grzadzielska, and A. Das. 1989. Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif. Cell 59:207-218.
-
(1989)
Cell
, vol.59
, pp. 207-218
-
-
Lazinski, D.1
Grzadzielska, E.2
Das, A.3
-
30
-
-
0032540286
-
NMR structure of the bacteriophage λ N peptide/boxB RNA complex: Recognition of a GNRA fold by an arginine-rich motif
-
Legault, P., J. Li, J. Mogridge, L. E. Kay, and J. Greenblatt. 1998. NMR structure of the bacteriophage λ N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif. Cell 93:289-299.
-
(1998)
Cell
, vol.93
, pp. 289-299
-
-
Legault, P.1
Li, J.2
Mogridge, J.3
Kay, L.E.4
Greenblatt, J.5
-
31
-
-
0036470051
-
Protein Explorer: Easy yet powerful macromolecular visualization
-
Martz, E. 2002. Protein Explorer: easy yet powerful macromolecular visualization. Trends Biochem. Sci. 27:107-109.
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 107-109
-
-
Martz, E.1
-
33
-
-
0029865623
-
Context-dependent secondary structure formation of a designed protein sequence
-
Minor, D. L., Jr, and P. S. Kim. 1996. Context-dependent secondary structure formation of a designed protein sequence. Nature 380:730-734.
-
(1996)
Nature
, vol.380
, pp. 730-734
-
-
Minor Jr, D.L.1
Kim, P.S.2
-
34
-
-
1542573278
-
Origin of the neutral and nearly neutral theories of evolution
-
Ohta, T. 2003. Origin of the neutral and nearly neutral theories of evolution. J. Biosci. 28:371-377.
-
(2003)
J. Biosci
, vol.28
, pp. 371-377
-
-
Ohta, T.1
-
35
-
-
0032864043
-
Adaptive recognition in RNA complexes with peptides and protein modules
-
Patel, D. J. 1999. Adaptive recognition in RNA complexes with peptides and protein modules. Curr. Opin. Struct. Biol. 9:74-87.
-
(1999)
Curr. Opin. Struct. Biol
, vol.9
, pp. 74-87
-
-
Patel, D.J.1
-
36
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
37
-
-
0000641399
-
Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex
-
Scharpf, M., H. Sticht, K. Schweimer, M. Boehm, S. Hoffmann, and P. Rosch. 2000. Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex. Eur. J. Biochem. 267:2397-2408.
-
(2000)
Eur. J. Biochem
, vol.267
, pp. 2397-2408
-
-
Scharpf, M.1
Sticht, H.2
Schweimer, K.3
Boehm, M.4
Hoffmann, S.5
Rosch, P.6
-
39
-
-
0029048796
-
Structural variety of arginine-rich RNA-binding peptides
-
Tan, R., and A. D. Frankel. 1995. Structural variety of arginine-rich RNA-binding peptides. Proc. Natl. Acad. Sci. USA 92:5282-5286.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5282-5286
-
-
Tan, R.1
Frankel, A.D.2
-
41
-
-
0141730393
-
Context and conformation dictate function of a transcription antitermination switch
-
Xia, T., A. Frankel, T. T. Takahashi, J. Ren, and R. W. Roberts. 2003. Context and conformation dictate function of a transcription antitermination switch. Nat. Struct. Biol. 10:812-819.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 812-819
-
-
Xia, T.1
Frankel, A.2
Takahashi, T.T.3
Ren, J.4
Roberts, R.W.5
-
42
-
-
31944446215
-
Resolving the motional modes that code for RNA adaptation
-
Zhang, Q., X. Sun, E. D. Watt, and H. M. Al-Hashimi. 2006. Resolving the motional modes that code for RNA adaptation. Science 311:653-656.
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
|