Successions of bacterial community in composting cow dung wastes with or without hyperthermophilic pre-treatment

Applied Microbiology and Biotechnology

Volumn 81, Issue 4, 2008, Pages 771-781

  Yamada, Takeshi ^a   Suzuki, Atsushi ^a   Ueda, Hideyo ^b   Ueda, Yasuichi ^b   Miyauchi, Keisuke ^a   Endo, Ginro ^a  

^a TOHOKU GAKUIN UNIVERSITY   (Japan)

^b Japan Life Center Co   (Japan)

Author keywords

16S rRNA gene based clone library; Composting; Cow dung waste; Hyperthermophilic pre treatment; Multidimensional scaling analysis; Terminal restriction fragment length polymorphisms

Indexed keywords

16S RRNA GENE-BASED CLONE LIBRARY; COW DUNG WASTE; HYPERTHERMOPHILIC PRE-TREATMENT; MULTIDIMENSIONAL SCALING ANALYSIS; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS;

BACTERIOLOGY; BIOCHEMISTRY; CLARIFICATION; CLONING; POLYMORPHISM; POPULATION STATISTICS; PORT TERMINALS;

WASTE TREATMENT;

RIBOSOME RNA;

BACTERIUM; CATTLE; COMPARATIVE STUDY; COMPOSTING; METABOLISM; MICROBIAL COMMUNITY; PHYLOGENETICS; POLYMORPHISM; RNA; SUCCESSION;

AEROBIC BACTERIUM; ANAEROBIC METABOLISM; ANIMAL EXPERIMENT; ARTICLE; COMPARATIVE STUDY; COMPOSTING; COW; FIRMICUTES; GENE LIBRARY; HYPERTHERMOPHILIC BACTERIUM; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; UNINDEXED SEQUENCE; WASTE DISPOSAL;

ANIMALS; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; BIOREACTORS; CATTLE; DNA, BACTERIAL; DNA, RIBOSOMAL; ENDORIBONUCLEASES; FECES; HOT TEMPERATURE; MANURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SOIL; SOIL MICROBIOLOGY;

BACILLI (CLASS); BACTERIA (MICROORGANISMS); FIRMICUTES;

EID: 57249094207     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1736-3     Document Type: Article

References (36)

1. A Brauman JA Muller JL Garcia A Brune B Schink 1998 Fermentative degradation of 3-hydroxybenzoate in pure culture by a novel strictly anaerobic bacterium, Sporotomaculum hydroxybenzoicum gen. nov., sp. nov Int J Syst Bacteriol 48 215 221
2. JR Bray JT Curtis 1957 An ordination of the upland forest communities of southern Wisconsin Ecol Monographs 27 325 349
3. VR Cahyani K Matsuya S Asakawa M Kimura 2003 Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analyses Soil Sci Plant Nutr 49 619 630
4. B Chefetz Y Chen Y Hadar 1998 Purification and characterization of laccase from Chaetomium thermophilum and its role in humidification Appl Environ Microbiol 64 3175 3179
5. KR Clarke 1993 Non-parametric multivariate analysis of changes in community structure Aust J Ecol 18 117 143
6. PM Dees WC Ghiorse 2001 Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA FEMS Microbial Ecol 35 207 216
7. M Egert MW Friedrich 2003 Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure Appl Environ Microbiol 69 2555 2562
8. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
9. SJ Green FC Michel Y Hadar D Minz 2004 Similarity of bacterial communities in sawdust- and straw-amended cow manure composts FEMS Microbiol Lett 233 115 123
10. K Hatayama H Shoun Y Ueda A Nakamura 2005 Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost Int J Syst Evol Microbiol 55 2101 2104
11. A Hiraishi T Narihiro Y Yamanaka 2003 Microbial community dynamics during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste Environ Microbiol 5 765 776
12. P Hugenholtz T Huber 2003 Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases Int J Syst Evol Microbiol 53 289 293
13. H Imachi Y Sekiguchi Y Kamagata S Hanada A Ohashi H Harada 2002 Pelotomaculum thermopropionicum gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionate-oxidizing bacterium Int J Syst Evol Microbiol 52 1729 1735
14. H Imachi S Sakai A Ohashi H Harada S Hanada Y Kamagata Y Sekiguchi 2007 Pelotomaculum propionicum sp. nov., an anaerobic, mesophilic, obligately syntrophic, propionate-oxidizing bacterium Int J Syst Evol Microbiol 57 1487 1492
15. G Jobb 2008 TREEFINDER version June of 2008 Munish Germany Jobb G (2008) TREEFINDER version June of 2008. Munish, Germany Distributed by the author at http://www.treefinder.de
16. JB Kruskal 1964 Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis Psychometrika 298 1 27
17. K Kuroda D Hanajima Y Fukumoto K Suzuki 2004 Isolation of thermophilic ammonium-tolerant bacterium and Its application to reduce ammonia emission during composting of animal wastes Biosci Biotechnol Biochem 68 286 292
18. W Ludwig O Strunk R Westram L Richter H Meier Yadhukumar A Buchner T Lai S Steppi G Jobb W Förster I Brettske S Gerber AW Ginhart O Gross S Grumann S Hermann R Jost A König T Liss R Lüßmann M May B Nonhoff B Reichel R Strehlow A Stamatakis N Stuckmann A Vilbig M Lenke T Ludwig A Bode KH Schleifer 2004 ARB: a software environment for sequence data Nucleic Acids Res 32 1363 1371
19. T Lukow PF Dunfield W Liesack 2000 Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants FEMS Microbiol Ecol 32 241 247
20. K Nakasaki N Uehara M Kataoka H Kubota 1996 The use of Bacillus licheniformis HA1 to accelerate composting of organic wastes Comp Sci Util 4 47 51
21. AM Osborn ERB Moore KN Timmis 2000 An evaluation of terminal restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics Environ Microbiol 2 39 50
22. S Peters S Koschinsky F Schwieger C Tebbe 2000 Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes Appl Environ Microbiol 66 930 936
23. P Peu H Brugère AM Pourcher M Kérourdan JJ Godon JP Delgenès P Dabert 2006 Dynamic of a pig slurry microbial community during anarobic storage and management Appl Environ Microbiol 72 3578 3585
24. YL Qiu Y Sekiguchi H Imachi Y Kamagata IC Tseng SS Cheng A Ohashi H Harada 2003 Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing Arch Microbiol 179 242 249
25. GN Rees DS Baldwin GO Watson S Perryman DL Nielsen 2004 Ordination and significance testing of microbial community composition derived from terminal restriction fragment length polymorphisms: application of multivariate statistics Antonie Leeuwenhoek 86 339 347
26. N Requena R Azcón MT Baca 1996 Chemical changes in humic substances from compost due to incubation with ligno-cellulotic microorganisms and effects on lettuce growth Appl Microbiol Biotechnol 45 857 863
27. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
28. H Sasaki H Yano T Sasaki Y Nakai 2005 A survey of ammonia-assimilating micro-organisms in cattle manure composting J Appl Microbiol 99 1356 1363
29. Stevenson FJ (1994) Humus chemistry. Wiley, New York
30. Swofford DL (2002) PAUP: phylogenetic analysis using parsimony (and other methods), version 4. Sinauer, Sunderland
31. Y Tang T Shigematsu Ikbal S Morimura K Kida 2004 The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester Water Res 38 2537 2550
32. SM Tiquia 2005 Microbial community dynamics in manure composts based on 16S and 18S rDNA T-RFLP profiles Environ Technol 26 1101 1113
33. S Wakase H Sasaki K Itoh K Otawa O Kitazume J Nonaka M Satoh T Sasaki Y Nakai 2008 Investigation of the microbial community in a microbiological additive used in a manure composting process Bioresor Technol 99 2687 2693
34. Z Wei B Xi Y Zhao S Wang H Liu Y Jiang 2007 Effect of inoculation microbes in municipal solid waste composting on characteristics of humic acid Chemosphere 68 368 374
35. WG Weisburg SM Barns DA Pelletier DJ Lane 1991 16S ribosomal DNA amplification for phylogenetic study J Bacteriol 173 697 703
36. T Yamada K Miyauchi H Ueda Y Ueda H Sugawara Y Nakai G Endo 2007 Composting cattle dung wastes by using a hyperthermophilic pre-treatment process: characterization by physicochemical and molecular biological analysis J Biosci Bioeng 104 408 415