Kinetics of the interactions between yeast elongation factors 1A and 1Bα, guanine nucleotides, and aminoacyl-tRNA

Journal of Biological Chemistry

Volumn 282, Issue 49, 2007, Pages 35629-35637

  Gromadski, Kirill B ^a   Schümmer, Tobias ^a,d   Strømgaard, Anne ^b   Knudsen, Charlotte R ^b   Kinzy, Terri Goss ^c   Rodnina, Marina V ^a  

^a UNIVERSITY OF WITTEN HERDECKE   (Germany)

^b AARHUS UNIVERSITY   (Denmark)

^c RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

^d TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOACYL-TRNA; EXCHANGE RATE; GUANINE NUCLEOTIDES; NUCLEOTIDE EXCHANGE FACTORS;

NUCLEOTIDES; PROTEINS; REACTION KINETICS;

YEAST;

AMINOACYL TRANSFER RNA; ELONGATION FACTOR 1; ELONGATION FACTOR 1A; ELONGATION FACTOR 1BALPHA; FUNGAL PROTEIN; GUANINE NUCLEOTIDE; GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATE; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; BINDING KINETICS; COMPARATIVE STUDY; CONCENTRATION RESPONSE; CONTROLLED STUDY; DISSOCIATION; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; STATISTICAL SIGNIFICANCE;

GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATE; KINETICS; PEPTIDE ELONGATION FACTOR 1; PEPTIDE ELONGATION FACTOR TU; PROTEIN BINDING; RNA, TRANSFER, AMINO ACYL; RNA, TRANSFER, PHE; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

PROKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 37249009538     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M707245200     Document Type: Article

References (68)

1. Merrick, W. C., and Nyborg, J. (2000) in Translational Control of Gene Expression (Sonenberg, N., Hershey, J. W. B., and Mathews, M. B., eds) pp. 89-126, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
2. Perez, J. M., Siegal, G., Kriek, J., Hard, K., Dijk, J., Canters, G. W., and Moller, W. (1999) Structure 7, 217-226
3. Andersen, G. R., Pedersen, L., Valente, L., Chatterjee, I., Kinzy, T. G., Kjeldgaard, M., and Nyborg, J. (2000) Mol. Cell 6, 1261-1266
4. Andersen, G. R., Valente, L., Pedersen, L., Kinzy, T. G., and Nyborg, J. (2001) Nat. Struct. Biol. 8, 531-534
5. Kawashima, T., Berthet-Colominas, C., Wulff, M., Cusack, S., and Leberman, R. (1996) Nature 379, 511-518
6. Wang, Y., Jiang, Y. X., Meyering-Voss, M., Sprinzl, M., and Sigler, P. B. (1997) Nat. Struct. Biol. 4, 650-656
7. Saha, S. K., and Chakraburtty, K. (1986) J. Biol. Chem. 261, 12599-12603
8. Pittman, Y. R., Valente, L., Jeppesen, M. G., Andersen, G. R., Patel, S., and Kinzy, T. G. (2006) J. Biol. Chem. 281, 19457-19468
9. Boehlke, K. W., and Friesen, J. D. (1975) J. Bacteriol. 121, 429-433
10. Bonven, B., and Gullov, K. (1979) Mol. Gen. Genet. 170, 225-230
11. Gromadski, K. B., Wieden, H. J., and Rodnina, M. V. (2002) Biochemistry 41, 162-169
12. Wagner, A., Simon, I., Sprinzl, M., and Goody, R. S. (1995) Biochemistry 34, 12535-12542
13. Kinzy, T. G., and Woolford, J. L., Jr. (1995) Genetics 141, 481-489
14. Janssen, G. M., and Möller, W. (1988) J. Biol. Chem. 263, 1773-1778
15. Richter, D. (1970) Biochem. Biophys. Res. Commun. 38, 864-870
16. Dell, V. A., Miller, D. L., and Johnson, A. E. (1990) Biochemistry 29, 1757-1763
17. Clark, B. F., and Nyborg, J. (1997) Curr. Opin. Struct. Biol. 7, 110-116
18. Dale, T., Sanderson, L. E., and Uhlenbeck, O. C. (2004) Biochemistry 43, 6159-6166
19. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F., and Nyborg, J. (1995) Science 270, 1464-1472
20. Nissen, P., Thirup, S., Kjeldgaard, M., and Nyborg, J. (1999) Structure 7, 143-156
21. Petrushenko, Z. M., Budkevich, T. V., Shalak, V. F., Negrutskii, B. S., and El'skaya, A. V. (2002) Eur. J. Biochem. 269, 4811-4818
22. Pedersen, L., Andersen, G. R., Knudsen, C. R., Kinzy, T. G., and Nyborg, J. (2001) Acta Crystallogr. D. Biol. Crystallogr. 57, 159-161
23. Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., and Bairoch, A. (2003) Nucleic Acids Res. 31, 3784-3788
24. Tombs, M. P., Souter, F., and Maclagan, N. F. (1959) Biochem. J. 73, 167-171
25. Scopes, R. K. (1974) Anal. Biochem. 59, 277-282
26. Hemsath, L., and Ahmadian, M. R. (2005) Methods 37, 173-182
27. Wintermeyer, W., and Zachau, H. G. (1974) Methods Enzymol. 29, 667-673
28. Rodnina, M. V., Fricke, R., and Wintermeyer, W. (1994) Biochemistry 33, 12267-12275
29. Jameson, D. M., Gratton, E., and Eccleston, J. F. (1987) Biochemistry 26, 3894-3901
30. Rodnina, M. V., Pape, T., Fricke, R., Kuhn, L., and Wintermeyer, W. (1996) J. Biol. Chem. 271, 646-652
31. Fersht, A. (1999) Structure and Mechanism in Protein Science, W. H. Freeman and Company, New York
32. Crechet, J. B., and Parmeggiani, A. (1986) Eur. J. Biochem. 161, 647-653
33. Wilden, B., Savelsbergh, A., Rodnina, M. V., and Wintermeyer, W. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 13670-13675
34. Kapp, L. D., and Lorsch, J. R. (2004) J. Mol. Biol. 335, 923-936
35. Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L., Wang, C., Cheng, Z., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J., and Song, H. (2007) Cell 129, 929-941
36. Pisareva, V. P., Pisarev, A. V., Hellen, C. U., Rodnina, M. V., and Pestova, T. V. (2006) J. Biol. Chem. 281, 40224-40235
37. Rensland, H., John, J., Linke, R., Simon, I., Schlichting, I., Wittinghofer, A., and Goody, R. S. (1995) Biochemistry 34, 593-599
38. Zavialov, A. V., Buckingham, R. H., and Ehrenberg, M. (2001) Cell 107, 115-124
39. Milon, P., Tischenko, E., Tomsic, J., Caserta, E., Folkers, G., La Teana, A., Rodnina, M. V., Pon, C. L., Boelens, R., and Gualerzi, C. O. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 13962-13967
40. Pisareva, V. P., Hellen, C. U., and Pestova, T. V. (2007) Biochemistry 46, 2622-2629
41. Thanbichler, M., Böck, A., and Goody, R. S. (2000) J. Biol. Chem. 275, 20458-20466
42. Jagath, J. R., Rodnina, M. V., Lentzen, G., and Wintermeyer, W. (1998) Biochemistry 37, 15408-15413
43. Moser, C., Mol, O., Goody, R. S., and Sinning, I. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11339-11344
44. Leibundgut, M., Frick, C., Thanbichler, M., Bock, A., and Ban, N. (2005) EMBO J. 24, 11-22
45. Hansson, S., Singh, R., Gudkov, A. T., Liljas, A., and Logan, D. T. (2005) FEBS Lett. 579, 4492-4497
46. al-Karadaghi, S., Aevarsson, A., Garber, M., Zheltonosova, J., and Liljas, A. (1996) Structure 4, 555-565
47. Laurberg, M., Kristensen, O., Martemyanov, K., Gudkov, A. T., Nagaev, I., Hughes, D., and Liljas, A. (2000) J. Mol. Biol. 303, 593-603
48. Czworkowski, J., Wang, J., Steitz, T. A., and Moore, P. B. (1994) EMBO J. 13, 3661-3668
49. Czworkowski, J., and Moore, P. B. (1997) Biochemistry 36, 10327-10334
50. Vetter, I. R., and Wittinghofer, A. (2001) Science 294, 1299-1304
51. John, J., Sohmen, R., Feuerstein, J., Linke, R., Wittinghofer, A., and Goody, R. S. (1990) Biochemistry 29, 6058-6065
52. Berchtold, H., Reshetnikova, L., Reiser, C. O., Schirmer, N. K., Sprinzl, M., and Hilgenfeld, R. (1993) Nature 365, 126-132
53. Abel, K., Yoder, M. D., Hilgenfeld, R., and Jurnak, F. (1996) Structure 4, 1153-1159
54. Polekhina, G., Thirup, S., Kjeldgaard, M., Nissen, P., Lippmann, C., and Nyborg, J. (1996) Structure 4, 1141-1151
55. Klebe, C., Prinz, H., Wittinghofer, A., and Goody, R. S. (1995) Biochemistry 34, 12543-12552
56. Ikemura, T. (1982) J. Mol. Biol. 158, 573-597
57. Liu, G., Tang, J., Edmonds, B. T., Murray, J., Levin, S., and Condeelis, J. (1996) J. Cell Biol. 135, 953-963
58. Waldron, C., and Lacroute, F. (1975) J. Bacteriol. 122, 855-865
59. Jagadish, M. N., and Carter, B. L. (1978) J. Cell Sci. 31, 71-78
60. Schümmer, T., Gromadski, K. B., and Rodnina, M. V. (2007) Biochemistry 46, 4977-4984
61. Dahl, L. D., Wieden, H. J., Rodnina, M. V., and Knudsen, C. R. (2006) J. Biol. Chem. 281, 21139-21146
62. Zhang, Y., Li, X., and Spremulli, L. L. (1996) FEBS Lett. 391, 330-332
63. Zhang, Y., Yu, N.-J., and Spremulli, L. L. (1998) J. Biol. Chem. 273, 4556-4562
64. Wieden, H. J., Gromadski, K., Rodnin, D., and Rodnina, M. V. (2002) J. Biol. Chem. 277, 6032-6036
65. Janssen, G. M., and Moller, W. (1988) Eur. J. Biochem. 171, 119-129
66. Al-Maghrebi, M., Brule, H., Padkina, M., Allen, C., Holmes, W. M., and Zehner, Z. E. (2002) Nucleic Acids Res. 30, 5017-5028
67. Sanders, J., Brandsma, M., Janssen, G. M., Dijk, J., and Moller, W. (1996) J. Cell Sci. 109, 1113-1117
68. Olarewaju, O., Ortiz, P. A., Chowdhury, W. Q., Chatterjee, I., and Kinzy, T. G. (2004) RNA Biol. 1, 89-94