Phylogenetic relationships of Gagea Salisb. (Liliaceae) in Italy, inferred from molecular and morphological data matrices

Plant Systematics and Evolution

Volumn 276, Issue 3-4, 2008, Pages 219-234

  Peruzzi, L ^a   Peterson, A ^b   Tison, J M ^c   Peterson, J ^d  

^a UNIVERSITY OF PISA   (Italy)

^b MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^c State Office for Environmental Protection of Saxony Anhalt ^*  (France)

^d State Office for Environmental Protection of Saxony Anhalt   (Germany)

Author keywords

Gagea; ITS; Liliaceae; Lloydia; Morphology; psbA trnH intergenic spacer; Systematics; trnL trnF intergenic spacer

Indexed keywords

GAGEA; GAGEA POLIDORII; GAGEA PUSILLA; LILIACEAE; LLOYDIA; MAGNOLIOPHYTA;

EID: 57049157072     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-008-0081-4     Document Type: Article

References (73)

1. SI Ali 2006 Two new species of Gagea Salisb. (Liliaceae) from Pakistan Pak J Bot 38 1 43 46
2. GA Allen DE Soltis PA Soltis 2003 Phylogeny and biogeography of Erythronium (Liliaceae) inferred from chloroplast matK and nuclear rDNA ITS sequences Syst Bot 28 512 523
3. Bartolucci F, Peruzzi L (2008) Distribuzione del genere Gagea Salisb. (Liliaceae) nell'Appennino centro-settentrionale. Biogeographia (in press)
4. E Bayer G López González 1989 Nomenclatural notes on some names in Gagea Salisb. (Liliaceae) Taxon 38 4 643 645
5. J Bohdanowicz B Lewandowska 1999 Participation of endoplasmic reticulum in the unequal distribution of plastids during generative cell formation in Gagea lutea (L.) Ker-Gawl. (Liliaceae) Acta Biol Crac Ser Bot 41 177 183
6. KF Caparelli L Peruzzi G Cesca 2006 A comparative analysis of embryo-sac development in three closely-related Gagea Salisb. species (Liliaceae), with some consideration on their reproductive strategies Pl Biosyst 140 2 115 122
7. P Cuccuini E Luccioli 1995 Tipificazione di Ornithogalum spathaceum Hayne (Liliaceae) e presenza di Gagea spathacea (Hayne) Salisb. nella flora italiana Webbia 49 2 253 264
8. MT Davlianidze 1972 Generis Gagea Salisb. conspectus specierum Caucasicarum I Notulae Systematicae ac Geographicae Instituti Botanici Thbilissensis 29 69 75
9. TH Eickbush DG Eickbush 2007 Finely orchestrated movements: Evolution of the ribosomal RNA genes Genetics 175 477 485
10. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
11. PP Ferrer Gallego E Laguna Lumbreras S Alba Villegas JM Tison 2007 Sobre la presencia de Gagea lacaitae A. Terracc. (Liliaceae) en la flora valenciana Acta Bot Malacitana 32 1 12
12. D Gargano L Peruzzi KF Caparelli G Cesca 2007 Preliminary observations on the reproductive strategies in five early-flowering species of Gagea Salisb. (Liliaceae) Bocconea 21 349 358
13. J Greilhuber I Ebert A Lorenz B Vyskot 2000 Origin of facultative heterochromatin in the endosperm of Gagea lutea (Liliaceae) Protoplasma 212 217 226
14. TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98
15. H Henker 2005 Die Goldsterne von Mecklenburg-Vorpommern unter besonderer Berücksichtigung kritischer und neuer Sippen Botanischer Rundbrief für Mecklenburg-Vorpommern 39 5 89
16. JP Huelsenbeck F Ronquist 2001 Bayesian inference of phylogenetic trees Bioinformatics 17 8 754 755
17. JP Huelsenbeck B Larget RE Miller F Ronquist 2002 Potential applications and pitfalls of Bayesian inference of phylogeny Syst Biol 51 673 688
18. M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Molec Evol 16 111 120
19. N Ikinci C Oberprieler A Güner 2006 On the origin of European lilies: phylogenetic analysis of Lilium section Liriotypus (Liliaceae) using sequences of the nuclear ribosomal transcribed spacers Willdenowia 36 647 656
20. H John A Peterson J Peterson 2004 Zum taxonomischen Rang zweier kritischer Sippen der Gattung Gagea in Mitteleuropa. Mitt. florist. Kart Sachsen-Anhalt (Halle) 9 15 26
21. IG Levichev 1990 The synopsis of the genus Gagea (Liliaceae) from the western Tien-Shan Bot Zhurn 75 2 225 234
22. IG Levichev 1999 Phytogeographical analysis of the genus Gagea Salisb. (Liliaceae) Komarovia 1 47 59
23. IG Levichev 1999 The morphology of Gagea Salisb. (Liliaceae) I. Subterranean organs Flora 194 379 392
24. IG Levichev 2001 New species of the genus Gagea Salisb. (Liliaceae) from western regions of Asia Turczaninowia 4 1-2 5 35
25. IG Levichev 2006 Four new species of the genus Gagea Salisb. (Liliaceae) from Western Himalayas and the adjoining regions Pak J Bot 38 1 47 54
26. IG Levichev 2006 A review of the Gagea (Liliaceae) species in the flora of Caucasus Bot Zhurn 91 6 917 951
27. IG Levichev SI Ali 2006 Seven new species of the genus Gagea Salisb. (Liliaceae) from Western Himalayas and adjoining regions Pak J Bot 38 1 55 62
28. IG Levichev J-M Tison 2004 Typification of the Caucasian Gagea (Liliaceae) taxa described by Karl Koch Candollea 59 119 133
29. T Nishikawa K Okazaki T Uchino K Arakawa T Nagamine 1999 A molecular phylogeny of Lilium in the internal transcribed spacer region of nuclear ribosomal DNA J Molec Evol 49 238 249
30. TB Patterson TJ Givnish 2002 Phylogeny, concerted convergence, and phylogenetic niche conservatism in the core Liliales: Insights from rbcL and ndhF sequence data Evolution 56 233 252
31. TB Patterson TJ Givnish 2004 Geographic cohesion, chromosomal evolution, parallel adaptive radiations, and consequent floral adaptations in Calochortus (Calochortaceae): evidence from a cpDNA phylogeny New Phytol 161 253 264
32. L Peruzzi 2003 Contribution to the cytotaxonomical knowledge of Gagea Salisb. (Liliaceae) sect. Foliatae A. Terracc. and synthesis of karyological data Caryologia 56 1 115 128
33. L Peruzzi 2006 Taxonomic considerations on the nomenclatural types of Gagea rhodiaca A. Terracc. and G. reticulata subsp. africana A. Terracc. (Liliaceae), kept at Pisa (PI) Atti Soc Tosc Sci Nat Mem B 113 69 71
34. L Peruzzi 2008 Contribution to the cytotaxonomical knowledge of the genus Gagea Salisb. (Liliaceae). III. New karyological data from the central Mediterranean area Caryologia 61 1 92 106
35. L Peruzzi 2008 Studi biosistematici nel genere Gagea Salisb. (Liliaceae): recenti acquisizioni e problemi ancora aperti Inform Bot Ital 39 Suppl.1 143 146
36. L Peruzzi 2008 Hybridity as a main evolutionary force in the genus Gagea Salisb. (Liliaceae) Pl Biosyst 142 1 179 183
37. L Peruzzi G Aquaro 2005 Contribution to the cytotaxonomical knowledge of Gagea Salisb. (Liliaceae) II. Further karyological studies on Italian populations Candollea 60 1 237 253
38. L Peruzzi F Bartolucci 2006 Gagea luberonensis J.-M. Tison (Liliaceae) new for the Italian flora Webbia 61 1 1 12
39. L Peruzzi F Bartolucci F Frignani F Minutillo 2007 G. tisoniana, a new species of Gagea Salisb. sect. Gagea (Liliaceae) from c Italy Bot J Linn Soc 155 3 337 347
40. L Peruzzi KF Caparelli 2007 Gagea peduncularis (J. & C. Presl) Pascher (Liliaceae) new for the Italian flora Webbia 62 2 261 268
41. L Peruzzi D Gargano 2005 Distribuzione del genere Gagea Salisb. (Liliaceae) in Calabria Inform Bot Ital 37 2 1117 1124
42. Peruzzi L, Tison JM, Peterson A, Peterson J (2008) On the phylogenetic position and taxonomic value of Gagea trinervia (Viv.) Greuter and the whole G. sect. Anthericoides A. Terracc. (Liliaceae). Taxon (in press)
43. L Peruzzi J-M Tison 2004 Typification and taxonomic status of eleven taxa of Gagea Salisb. (Liliaceae) described by Achille and Nicola Terracciano and conserved at Napoli (NAP) Candollea 59 2 325 346
44. L Peruzzi J-M Tison 2005 Typification and taxonomic status of six taxa of Gagea Salisb. (Liliaceae) described from Sicily and conserved at Palermo (PAL) Candollea 60 2 289 298
45. L Peruzzi J-M Tison 2006 Typification of the names and taxonomic status of six taxa of Gagea Salisb. (Liliaceae) conserved at Firenze (FI) Candollea 61 2 293 303
46. L Peruzzi J-M Tison 2007 Typification of six critical Mediterranean Gagea Salisb. (Liliaceae) species Candollea 62 2 173 188
47. L Peruzzi M Zarrei 2007 Typification of some critical taxa of Gagea Salisb. (Liliaceae) from W Asia Candollea 62 2 237 244
48. A Peterson H John E Koch J Peterson 2004 A molecular phylogeny of the genus Gagea (Liliaceae) in Germany inferred from non-coding chloroplast and nuclear DNA sequences Pl Syst Evol 245 145 162
49. A Peterson IG Levichev J Peterson 2008 Systematics of Gagea and Lloydia (Liliaceae) and infrageneric classification of Gagea based on molecular and morphological data Molec Phylogenet Evol 46 446 465
50. I Rešetnik Z Liber Z Satovic P Cigić T Nikolić 2007 Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences Pl Syst Evol 265 1-2 45 58
51. N Rønsted S Law H Thornton MF Fay MW Chase 2005 Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria Molec Phylogenet Evol 35 509 527
52. J Rozas JC Sánchez-Delbarrio X Messeguer R Rozas 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496 2497
53. T Sang DJ Crawford TF Stuessy 1997 Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae) Amer J Bot 84 1120 1136
54. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland
55. D-Y Tan Z Zhang X-R Li D-Y Hong 2005 Restoration of the genus Amana Honda (Liliaceae) based on a cladistic analysis of morphological characters Acta Phytotax Sin 43 3 262 270
56. JD Thompson DG Higgins TJ Gibson 1994 Clustal-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
57. JM Tison 1998 Note complementaire sur quelques Gagea français Monde Pl 462 7 8
58. J-M Tison 2001 Typification de Gagea cossoniana Pascher, de Gagea fragifera (Vill.) Ehr. Bayer et G. Lopez et de Gagea maroccana (A. Terracc.) Sennen et Mauricio Candollea 56 1 197 202
59. J-M Tison 2004 Gagea polidorii J.-M. Tison, espèce méconnue du sud-ouest des Alpes et des Apennins Acta Bot Gall 151 3 319 326
60. J-M Tison 2004 Identité et situation taxonomique de Gagea polymorpha Boissier Candollea 59 1 109 117
61. J-M Tison 2004 Contribution a la connaissance du genre Gagea Salisb. (Liliaceae) en Afrique du Nord Lagascalia 24 67 87
62. JM Tison P Perret 2004 Typification d'Ornithogalum pusillum F. W. Schmidt et relations taxonomiques entre Gagea pusilla (F. W. Schmidt) Sweet, Ornithogalum clusii Tausch et G. clusiana Schult. & Schult. f Candollea 59 1 103 108
63. JCT Uphof 1958 A review of the genus Gagea Salisb Pl Life 14 124 133
64. Y Van de Peer R De Wachter 1994 Treecon for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment Comput Appl Biosci 10 569 570
65. RA Volkov NY Komarova V Hemleben 2007 Ribosomal DNA in plant hybrids: inheritance, rearrangement, expression Syst Biodivers 5 261 276
66. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 315-322
67. RH Zander 2004 Minimal values for reliability of bootstrap and jackknife proportions, decay index, and Bayesian posterior probability Phyloinformatics 2 1 13
68. M Zarrei S Zarre 2005 A new species of Gagea (Liliaceae) from Iran Nord J Bot 23 269 274
69. M Zarrei S Zarre 2005 Pollen morphology of the genus Gagea (Liliaceae) in Iran Flora 200 96 108
70. M Zarrei S Zarre P Wilkin M Rix 2007 Systematic revision of the genus Gagea Salisb. (Liliaceae) in Iran Bot J Linn Soc 154 4 559 588
71. LQ Zhao J Yang 2006 Gagea daqingshanensis (Liliaceae), a new species from Inner Mongolia, China Ann Bot Fenn 43 223 224
72. YZ Zhao LQ Zhao 2003 A new species of Gagea (Liliaceae) from Nei Mongol, China Acta Phytotax Sin 41 4 393 394
73. YZ Zhao LQ Zhao 2004 Gagea chinensis (Liliaceae), a new species from Inner Mongolia, China Ann Bot Fenn 41 297 298