메뉴 건너뛰기




Volumn 5265 LNBI, Issue , 2008, Pages 460-470

Accelerating BLASTP on the cell broadband engine

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; COMPUTATIONAL EFFICIENCY; ENGINES;

EID: 57049099752     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-88436-1_39     Document Type: Conference Paper
Times cited : (7)

References (14)
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs
    • Altschul, S.F., et al.: Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs. Nucleic Acid Research 25(7), 3389-3402 (1997)
    • (1997) Nucleic Acid Research , vol.25 , Issue.7 , pp. 3389-3402
    • Altschul, S.F.1
  • 3
    • 33745322315 scopus 로고    scopus 로고
    • A Deterministic Finite Automaton for Faster Protein Hit Detection in BLAST
    • Cameron. M., Williams. H.E., Cannane, A.: A Deterministic Finite Automaton for Faster Protein Hit Detection in BLAST. Journal of Computational Biology 13(4), 965-978 (2006)
    • (2006) Journal of Computational Biology , vol.13 , Issue.4 , pp. 965-978
    • Cameron, M.1    Williams, H.E.2    Cannane, A.3
  • 5
    • 84874601312 scopus 로고    scopus 로고
    • Jacob, A., Lancaster, J., Harris, B., Buhler, J.. Chamberlain. R.: Mercury BLASTP: Accelerating Protein Sequence Alignment. ACM Transactions on Reconfigurable Technology and Systems(to appear, 2008)
    • Jacob, A., Lancaster, J., Harris, B., Buhler, J.. Chamberlain. R.: Mercury BLASTP: Accelerating Protein Sequence Alignment. ACM Transactions on Reconfigurable Technology and Systems(to appear, 2008)
  • 6
    • 25844503119 scopus 로고    scopus 로고
    • Introduction the Cell multiprocessor
    • Kahle, J.A., et al.: Introduction the Cell multiprocessor. IBM Journal of Research and Development 49(4/5). 598-604 (2005)
    • (2005) IBM Journal of Research and Development , vol.49 , Issue.4-5 , pp. 598-604
    • Kahle, J.A.1
  • 7
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like Alignment Tool
    • Kent, W.J.: BLAT - The BLAST-like Alignment Tool. Genome Research 12(4), 656-664 (2002)
    • (2002) Genome Research , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 8
    • 33746923043 scopus 로고    scopus 로고
    • Cell multiprocessor communication network: Built for speed
    • Kistler, M., Perrone, F., Petrini, F.: Cell multiprocessor communication network: built for speed. IEEE Micro. 26(3), 10-23 (2006)
    • (2006) IEEE Micro , vol.26 , Issue.3 , pp. 10-23
    • Kistler, M.1    Perrone, F.2    Petrini, F.3
  • 10
    • 33746091677 scopus 로고    scopus 로고
    • ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis
    • Oehmen, C., Nieplocha, J.: ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis. IEEE Transactions on Parallel and Distributed Systems 17(8). 740-749 (2006)
    • (2006) IEEE Transactions on Parallel and Distributed Systems , vol.17 , Issue.8 , pp. 740-749
    • Oehmen, C.1    Nieplocha, J.2
  • 11
    • 27344435504 scopus 로고    scopus 로고
    • The design and implementation of a first-generation Cell processor
    • San Francisco, CA, pp
    • Pham, D.. et al.: The design and implementation of a first-generation Cell processor. In: Proceedings IEEE ISSCC 2005, San Francisco, CA, pp. 184-185 (2005)
    • (2005) Proceedings IEEE ISSCC , pp. 184-185
    • Pham, D.1
  • 13
    • 0019887799 scopus 로고
    • Identification of Common Molecular Subsequences
    • Smith, T.F., Waterman, M.S.: Identification of Common Molecular Subsequences. J. Mol. Biol. 147, 195-197 (1981)
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 14
    • 57049120467 scopus 로고    scopus 로고
    • Wirawan, A., Kwoh, C.K., Schmidt. B.: Parallel DNA Sequence Alignment on the Cell Broadband Engine. In: Wyrzykowski. R., Dongarra, J., Karczewski, K., Waśniewski, J. (eds.) PPAM 2007. LNCS. 4967. Springer, Heidelberg (to appear, 2008)
    • Wirawan, A., Kwoh, C.K., Schmidt. B.: Parallel DNA Sequence Alignment on the Cell Broadband Engine. In: Wyrzykowski. R., Dongarra, J., Karczewski, K., Waśniewski, J. (eds.) PPAM 2007. LNCS. vol. 4967. Springer, Heidelberg (to appear, 2008)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.