Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1

Virology

Volumn 383, Issue 1, 2009, Pages 131-135

  Herbst, Lawrence H ^a   Lenz, Jack ^a   Van Doorslaer, Koenraad ^a   Chen, Zigui ^a   Stacy, Brian A ^b   Wellehan Jr , James F X ^b   Manire, Charles A ^c   Burk, Robert D ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b University of Florida   (United States)

^c MOTE MARINE LABORATORY   (United States)

Author keywords

Chelonian; E6; E7; Molecular evolution; Papillomavirus; Reptile

Indexed keywords

ARTICLE; BIRD; CARETTA CARETTA PAPILLOMAVIRUS 1; CHELONIA MYDAS PAPILLOMAVIRUS 1; EVOLUTIONARY RATE; GENE SEQUENCE; MAMMAL; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PAPILLOMA VIRUS; PHYLOGENY; PRIORITY JOURNAL; REPTILE; TAXONOMY; TURTLE; VIRUS ISOLATION;

ANIMALS; CHORDATA; CLUSTER ANALYSIS; DNA, VIRAL; GENE ORDER; GENOME, VIRAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; ONCOGENE PROTEINS, VIRAL; PAPILLOMAVIRIDAE; PAPILLOMAVIRUS INFECTIONS; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; TURTLES;

AMNIOTA; AVES; CARETTA CARETTA; CHELONIA MYDAS; CHELONIIDAE; MAMMALIA; PAPILLOMAVIRIDAE; REPTILIA; TESTUDINES;

EID: 57049094372     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.09.022     Document Type: Article

References (27)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
2. Benton M.J., and Donoghue P.C. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24 (2007) 26-53
3. Bowen B.W., Nelson W.S., and Avise J.C. A molecular phylogeny for marine turtles: trait mapping, rate assessment, and conservation relevance. Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 5574-5577
4. Chen Z., Schiffman M., Herrero R., DeSalle R., and Burk R.D. Human papillomavirus (HPV) types 101 and 103 isolated from cervicovaginal cells lack an E6 open reading frame (ORF) and are related to gamma-papillomaviruses. Virology 360 (2007) 447-453
5. Cole S.T., and Danos O. Nucleotide sequence and comparative analysis of the human papillomavirus type 18 genome. Phylogeny of papillomaviruses and repeated structure of the E6 and E7 gene products. J. Mol. Biol. 193 (1987) 599-608
6. Danos O., and Yaniv M. E6 and E7 gene products evolved by amplification of a 33-amino acid peptide with a potential nucleic-acid-binding structure. Cancer Cells 5 (1987) 145-149
7. de Villiers E.M., Fauquet C., Broker T.R., Bernard H.U., and zur Hausen H. Classification of papillomaviruses. Virology 324 (2004) 17-27
8. Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC. Evol. Biol. 7 (2007) 214
9. Garcia-Vallve S., Alonso A., and Bravo I.G. Papillomaviruses: different genes have different histories. Trends Microbiol. 13 (2005) 514-521
10. Guex N., and Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18 (1997) 2714-2723
11. Hatama S., Nobumoto K., and Kanno T. Genomic and phylogenetic analysis of two novel bovine papillomaviruses, BPV-9 and BPV-10. J. Gen.Virol. 89 (2008) 158-163
12. Hedges S.B., and Poling L.L. A molecular phylogeny of reptiles. Science 283 (1999) 998-1001
13. Herbst L., Ene A., Su M., DeSalle R., and Lenz J. Tumor outbreaks in marine turtles are not due to recent herpesvirus mutations. Curr. Biol. 14 (2004) R697-R699
14. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
15. Ilyin V.A., Abyzov A., and Leslin C.M. Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Sci. 13 (2004) 1865-1874
16. Jackson M.E., Pennie W.D., McCaffery R.E., Smith K.T., Grindlay G.J., and Campo M.S. The B subgroup bovine papillomaviruses lack an identifiable E6 open reading frame. Mol. Carcinog. 4 (1991) 382-387
17. Jacobson E.R. Infectious disease and pathology of reptiles. In: Jacobson E.R. (Ed). Viruses and viral diseases of reptiles (2007), CRC Press, Boca Raton, Fl. 395-460
18. Kumar S., and Hedges S.B. A molecular timescale for vertebrate evolution. Nature 392 (1998) 917-920
19. Liu X., Clements A., Zhao K., and Marmorstein R. Structure of the human papillomavirus E7 oncoprotein and its mechanism for inactivation of the retinoblastoma tumor suppressor. J. Biol. Chem. 281 (2006) 578-586
20. Manire C.A., Stacy B.A., Kinsel M.J., Daniel H.T., Anderson E.T., and Wellehan Jr. J.F. Proliferative dermatitis in a loggerhead turtle, Caretta caretta, and a green turtle, Chelonia mydas, associated with novel papillomaviruses. Vet. Microbiol. 130 (2008) 227-237
21. Martin A.P., and Palumbi S.R. Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 4087-4091
22. Narechania A., Terai M., Chen Z., DeSalle R., and Burk R.D. Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas. J. Gen. Virol. 85 (2004) 1243-1250
23. Ohlenschlager O., Seiboth T., Zengerling H., Briese L., Marchanka A., Ramachandran R., Baum M., Korbas M., Meyer-Klaucke W., Durst M., and Gorlach M. Solution structure of the partially folded high-risk human papilloma virus 45 oncoprotein E7. Oncogene 25 (2006) 5953-5959
24. Rector A., Lemey P., Tachezy R., Mostmans S., Ghim S.J., Van D.K., Roelke M., Bush M., Montali R.J., Joslin J., Burk R.D., Jenson A.B., Sundberg J.P., Shapiro B., and Van R.M. Ancient papillomavirus-host co-speciation in Felidae. Genome Biol. 8 (2007) R57
25. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
26. Terai M., DeSalle R., and Burk R.D. Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus. J. Virol. 76 (2002) 10020-10023
27. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882