-
1
-
-
23944514849
-
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
-
Bagga, S., Bracht, J., Hunter, S., Massirer, K., Holtz, J., Eachus, R., and Pasquinelli, A.E. 2005. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122: 553-563.
-
(2005)
Cell
, vol.122
, pp. 553-563
-
-
Bagga, S.1
Bracht, J.2
Hunter, S.3
Massirer, K.4
Holtz, J.5
Eachus, R.6
Pasquinelli, A.E.7
-
2
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
37649021046
-
Identification of human microRNA targets from isolated argonaute protein complexes
-
Beitzinger, M., Peters, L., Zhu, J.Y., Kremmer, E., and Meister, G. 2007. Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol. 4: 76-84.
-
(2007)
RNA Biol
, vol.4
, pp. 76-84
-
-
Beitzinger, M.1
Peters, L.2
Zhu, J.Y.3
Kremmer, E.4
Meister, G.5
-
4
-
-
18044377963
-
Principles of microRNAtarget recognition
-
doi: 10.1371/journal.pbio.0030085
-
Brennecke, J., Stark, A., Russell, R.B., and Cohen, S.M. 2005. Principles of microRNAtarget recognition. PLoS Biol. 3: e85. doi: 10.1371/journal.pbio.0030085.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
5
-
-
33748346026
-
Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions
-
Didiano, D. and Hobert, O. 2006. Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions. Nat. Struct. Mol. Biol. 13: 849-851.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 849-851
-
-
Didiano, D.1
Hobert, O.2
-
6
-
-
42449086421
-
miR-148 targets human DNMT3b protein coding region
-
Duursma, A.M., Kedde, M., Schrier, M., le Sage, C., and Agami, R. 2008. miR-148 targets human DNMT3b protein coding region. RNA 14: 872-877.
-
(2008)
RNA
, vol.14
, pp. 872-877
-
-
Duursma, A.M.1
Kedde, M.2
Schrier, M.3
le Sage, C.4
Agami, R.5
-
7
-
-
40249106014
-
Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to upregulation of a large set of predicted target mRNAs in the liver
-
Elmén, J., Lindow, M., Silahtaroglu, A., Bak, M., Christensen, M., Lind-Thomsen, A., Hedtjärn, M., Hansen, J.B., Hansen, H.F., Straarup, E.M., et al. 2008a. Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to upregulation of a large set of predicted target mRNAs in the liver. Nucleic Acids Res. 36: 1153-1162.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1153-1162
-
-
Elmén, J.1
Lindow, M.2
Silahtaroglu, A.3
Bak, M.4
Christensen, M.5
Lind-Thomsen, A.6
Hedtjärn, M.7
Hansen, J.B.8
Hansen, H.F.9
Straarup, E.M.10
-
8
-
-
42249093319
-
LNA-mediated microRNA silencing in nonhuman primates
-
Elmén, J., Lindow, M., Schütz, S., Lawrence, M., Petri, A., Obad, S., Lindholm, M., Hedtjärn, M., Hansen, H.F., Berger, U., et al. 2008b. LNA-mediated microRNA silencing in nonhuman primates. Nature 452: 896-899.
-
(2008)
Nature
, vol.452
, pp. 896-899
-
-
Elmén, J.1
Lindow, M.2
Schütz, S.3
Lawrence, M.4
Petri, A.5
Obad, S.6
Lindholm, M.7
Hedtjärn, M.8
Hansen, H.F.9
Berger, U.10
-
9
-
-
41649115420
-
GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay
-
Eulalio, A., Huntzinger, E., and Izaurralde, E. 2008. GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay. Nat. Struct. Mol. Biol. 15: 346-353.
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 346-353
-
-
Eulalio, A.1
Huntzinger, E.2
Izaurralde, E.3
-
10
-
-
34250805982
-
miRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson, A., Farh, K.K., Johnston, W.K.K., Garrett-Engele, P., Lim, L.P., and Bartel, D.P. 2007. miRNA targeting specificity in mammals: Determinants beyond seed pairing. Mol. Cell 27: 91-105.
-
(2007)
Mol. Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
11
-
-
12344280017
-
Summaries of affymetrix genechip probe level data
-
doi: 10.1093/nar/gng015
-
Irizarry, R.A., Bolstad, B.M., Collin, F., Cope, L.M., Hobbs, B., and Speed, T.P. 2003. Summaries of affymetrix genechip probe level data. Nucleic Acids Res. 31: e15. doi: 10.1093/nar/gng015.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
12
-
-
37648999735
-
A biochemical approach to identifying microRNA targets
-
Karginov, F.V., Conaco, C., Xuan, Z., Schmidt, B.H., Parker, J.S., Mandel, G., and Hannon, G.J. 2007. A biochemical approach to identifying microRNA targets. Proc. Natl. Acad. Sci. 104: 19291-19296.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 19291-19296
-
-
Karginov, F.V.1
Conaco, C.2
Xuan, Z.3
Schmidt, B.H.4
Parker, J.S.5
Mandel, G.6
Hannon, G.J.7
-
13
-
-
34748821761
-
The role of site accessibility in microrna target recognition
-
Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U., and Segal, E. 2007. The role of site accessibility in microrna target recognition. Nat. Genet. 39: 1278-1284.
-
(2007)
Nat. Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
14
-
-
33748928159
-
The diverse functions of microRNAs in animal development and disease
-
Kloosterman, W.P. and Plasterk, R.H. 2006. The diverse functions of microRNAs in animal development and disease. Dev. Cell 11: 441-450.
-
(2006)
Dev. Cell
, vol.11
, pp. 441-450
-
-
Kloosterman, W.P.1
Plasterk, R.H.2
-
15
-
-
13444312098
-
Substrate requirements for let-7 function in the developing zebrafish embryo
-
Kloosterman, W.P., Wienholds, E., Ketting, R.F., and Plasterk, R.H. 2005. Substrate requirements for let-7 function in the developing zebrafish embryo. Nucleic Acids Res. 32: 6284-6291.
-
(2005)
Nucleic Acids Res
, vol.32
, pp. 6284-6291
-
-
Kloosterman, W.P.1
Wienholds, E.2
Ketting, R.F.3
Plasterk, R.H.4
-
16
-
-
28444469246
-
Silencing of microRNAs in vivo with antagomirs
-
Krützfeldt, J., Rajewsky, N., Braich, R., Rajeev, K.G., Tuschl, T., Manoharan, M., and Stoffel, M. 2005. Silencing of microRNAs in vivo with "antagomirs." Nature 438: 685-689.
-
(2005)
Nature
, vol.438
, pp. 685-689
-
-
Krützfeldt, J.1
Rajewsky, N.2
Braich, R.3
Rajeev, K.G.4
Tuschl, T.5
Manoharan, M.6
Stoffel, M.7
-
17
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P., Shih, I.H., Jones-Rhoades, M.W., Bartel, D.P., and Burge, C.B. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
18
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are miRNA targets
-
Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are miRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
19
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim, L.P., Lau, N.C., Garrett-Engele, P., Grimson, A., Schelter, J.M., Castle, J., Bartel, D.P., Linsley, P.S., and Johnson, J.M. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
20
-
-
34548707940
-
Affyprobeminer: A web resource for computing or retrieving accurately redefined affymetrix probe sets
-
Liu, H., Zeeberg, B.R., Qu, G., Koru, A.G., Ferrucci, A., Kahn, A., Ryan, M.C., Nuhanovic, A., Munson, P.J., Reinhold, W.C., et al. 2007. Affyprobeminer: A web resource for computing or retrieving accurately redefined affymetrix probe sets. Bioinformatics 23: 2385-2390.
-
(2007)
Bioinformatics
, vol.23
, pp. 2385-2390
-
-
Liu, H.1
Zeeberg, B.R.2
Qu, G.3
Koru, A.G.4
Ferrucci, A.5
Kahn, A.6
Ryan, M.C.7
Nuhanovic, A.8
Munson, P.J.9
Reinhold, W.C.10
-
21
-
-
35548996307
-
Determinants of targeting by endogenous and exogenous miRNAs and sirnas
-
Nielsen, C.B., Shomron, N., Sandberg, R., Hornstein, E., Kitzman, J., and Burge, C.B. 2007. Determinants of targeting by endogenous and exogenous miRNAs and sirnas. RNA 13: 1894-1910.
-
(2007)
RNA
, vol.13
, pp. 1894-1910
-
-
Nielsen, C.B.1
Shomron, N.2
Sandberg, R.3
Hornstein, E.4
Kitzman, J.5
Burge, C.B.6
-
22
-
-
43449090367
-
MicroRNA-10a binds the 5′-UTR of ribosomal protein mRNAs and enhances their translation
-
Orom, U.A., Nielsen, F.C., and Lund, A.H. 2008. MicroRNA-10a binds the 5′-UTR of ribosomal protein mRNAs and enhances their translation. Mol. Cell 30: 460-471.
-
(2008)
Mol. Cell
, vol.30
, pp. 460-471
-
-
Orom, U.A.1
Nielsen, F.C.2
Lund, A.H.3
-
23
-
-
33847417585
-
P bodies and the control of mRNA translation and degradation
-
Parker, R. and Sheth, U. 2007. P bodies and the control of mRNA translation and degradation. Mol. Cell 25: 635-646.
-
(2007)
Mol. Cell
, vol.25
, pp. 635-646
-
-
Parker, R.1
Sheth, U.2
-
24
-
-
32444436121
-
Short RNAs repress translation after initiation in mammalian cells
-
Petersen, C.P., Bordeleau, M.E., Pelletier, J., and Sharp, P.A. 2006. Short RNAs repress translation after initiation in mammalian cells. Mol. Cell 21: 533-542.
-
(2006)
Mol. Cell
, vol.21
, pp. 533-542
-
-
Petersen, C.P.1
Bordeleau, M.E.2
Pelletier, J.3
Sharp, P.A.4
-
25
-
-
24644480213
-
Inhibition of translational initiation by Let-7 MicroRNA in human cells
-
Pillai, R.S., Bhattacharyya, S.N., Artus, C.G., Zoller, T., Cougot, N., Basyuk, E., Bertrand, E., and Filipowicz, W. 2005. Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science 309: 1573-1576.
-
(2005)
Science
, vol.309
, pp. 1573-1576
-
-
Pillai, R.S.1
Bhattacharyya, S.N.2
Artus, C.G.3
Zoller, T.4
Cougot, N.5
Basyuk, E.6
Bertrand, E.7
Filipowicz, W.8
-
26
-
-
33750318273
-
A guide through present computational approaches for the identification of mammalian microRNA targets
-
Sethupathy, P., Megraw, M., and Hatzigeorgiou, A.G. 2006. A guide through present computational approaches for the identification of mammalian microRNA targets. Nat. Methods 3: 881-886.
-
(2006)
Nat. Methods
, vol.3
, pp. 881-886
-
-
Sethupathy, P.1
Megraw, M.2
Hatzigeorgiou, A.G.3
-
27
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article
-
Smyth, G.K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3: Article 3.
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
28
-
-
33745813856
-
The cartilage specific microRNA-140 targets Histone Deacetylase 4 in mouse cells
-
Tuddenham, L., Wheeler, G., Ntounia-Fousara, S., Waters, J., Hajihosseini, M.K., Clark, I., and Dalmay, T. 2006. The cartilage specific microRNA-140 targets Histone Deacetylase 4 in mouse cells. FEBS Lett. 580: 4214-4217.
-
(2006)
FEBS Lett
, vol.580
, pp. 4214-4217
-
-
Tuddenham, L.1
Wheeler, G.2
Ntounia-Fousara, S.3
Waters, J.4
Hajihosseini, M.K.5
Clark, I.6
Dalmay, T.7
-
29
-
-
22044458072
-
MicroRNA expression in zebrafish embryonic development
-
Wienholds, E., Kloosterman, W.P., Miska, E., Alvarez-Saavedra, E., Berezikov, E., de Bruijn, E., Horvitz, H.R., Kauppinen, S., and Plasterk, R.H. 2005. MicroRNA expression in zebrafish embryonic development. Science 309: 310-311.
-
(2005)
Science
, vol.309
, pp. 310-311
-
-
Wienholds, E.1
Kloosterman, W.P.2
Miska, E.3
Alvarez-Saavedra, E.4
Berezikov, E.5
de Bruijn, E.6
Horvitz, H.R.7
Kauppinen, S.8
Plasterk, R.H.9
-
30
-
-
0027730383
-
Post-transcriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
Wightman, B., Ha, I., and Ruvkun, G. 1993. Post-transcriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75: 855-862.
-
(1993)
Cell
, vol.75
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
31
-
-
0037167899
-
-
Yang, I., Chen, E., Hasseman, J., Liang, W., Frank, B., Wang, S., Sharov, V., Saeed, A., White, J., Li, J., Lee, N., Yeatman, T., and Quackenbush, J. 2002. Within the fold: Assessing differential expression measures and reproducibility in microarray assays. Genome Biol. 3: research0062.1-research0062.12.
-
Yang, I., Chen, E., Hasseman, J., Liang, W., Frank, B., Wang, S., Sharov, V., Saeed, A., White, J., Li, J., Lee, N., Yeatman, T., and Quackenbush, J. 2002. Within the fold: Assessing differential expression measures and reproducibility in microarray assays. Genome Biol. 3: research0062.1-research0062.12.
-
-
-
-
32
-
-
22444437609
-
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
-
Zhao, Y., Samal, E., and Srivastava, D. 2005. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 436: 214-220.
-
(2005)
Nature
, vol.436
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
33
-
-
34547114271
-
A novel regulatory role for stromal-derived factor-1 signaling in bone morphogenic protein-2 osteogenic differentiation of mesenchymal C2C12 cells
-
Zhu, W., Boachie-Adjei, O., Rawlins, B.A., Frenkel, B., Boskey, A.L., Ivashkiv, L.B., and Blobel, C.P. 2007. A novel regulatory role for stromal-derived factor-1 signaling in bone morphogenic protein-2 osteogenic differentiation of mesenchymal C2C12 cells. J. Biol. Chem. 282: 18676-18685.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 18676-18685
-
-
Zhu, W.1
Boachie-Adjei, O.2
Rawlins, B.A.3
Frenkel, B.4
Boskey, A.L.5
Ivashkiv, L.B.6
Blobel, C.P.7
|