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Volumn 13, Issue 1, 2009, Pages 167-179

Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging

Author keywords

3D reconstruction; Curve skeleton; Dendrite; Medial geodesic function; Neuron; Spine

Indexed keywords

DENDRIMERS; DENDRITES (METALLOGRAPHY); GEODESY; IMAGE CLASSIFICATION; IMAGE RECONSTRUCTION; MILITARY OPERATIONS; NEURONS; OPTICAL MICROSCOPY; PROBABILITY DENSITY FUNCTION; REPAIR; RESTORATION;

EID: 57049087457     PISSN: 13618415     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.media.2008.06.019     Document Type: Article
Times cited : (51)

References (58)
  • 2
    • 0023831552 scopus 로고
    • Dendritic spines are susceptible to structural alterations induced by degeneration of their presynaptic afferents
    • Benshalom G., and White E.L. Dendritic spines are susceptible to structural alterations induced by degeneration of their presynaptic afferents. Brain Research 443 (1988) 377-382
    • (1988) Brain Research , vol.443 , pp. 377-382
    • Benshalom, G.1    White, E.L.2
  • 4
    • 0032585839 scopus 로고    scopus 로고
    • Rapid automated tracing and feature extraction from live high-resolution retinal fundus images using direct exploratory algorithms
    • Can A., Shen H., Turner J., Tanenbaum H., and Roysam B. Rapid automated tracing and feature extraction from live high-resolution retinal fundus images using direct exploratory algorithms. IEEE Transactions on Information Technology in Biomedicine 3 (1999) 125-138
    • (1999) IEEE Transactions on Information Technology in Biomedicine , vol.3 , pp. 125-138
    • Can, A.1    Shen, H.2    Turner, J.3    Tanenbaum, H.4    Roysam, B.5
  • 5
    • 0028444940 scopus 로고
    • Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue sections
    • Carlbom I., Terzopoulos D., and Harris K.M. Computer-assisted registration, segmentation, and 3d reconstruction from images of neuronal tissue sections. IEEE Transactions on Medical Imaging 13 2 (1994) 351-361
    • (1994) IEEE Transactions on Medical Imaging , vol.13 , Issue.2 , pp. 351-361
    • Carlbom, I.1    Terzopoulos, D.2    Harris, K.M.3
  • 8
    • 0036862156 scopus 로고    scopus 로고
    • Linear one-sided stability of mat for weakly injective domain
    • Choi S.W., and Seidel H.-P. Linear one-sided stability of mat for weakly injective domain. Journal of Mathematical Imaging and Vision 17 3 (2002) 237-247
    • (2002) Journal of Mathematical Imaging and Vision , vol.17 , Issue.3 , pp. 237-247
    • Choi, S.W.1    Seidel, H.-P.2
  • 9
    • 0026718091 scopus 로고
    • Digital overlay of fluorescein angiograms and fundus images for treatment of subretinal neovascularization
    • Clark T.M., Freeman W.R., and Goldbaum M.H. Digital overlay of fluorescein angiograms and fundus images for treatment of subretinal neovascularization. Journal of Retinal Vitreous Diseases 2 12 (1992) 118-126
    • (1992) Journal of Retinal Vitreous Diseases , vol.2 , Issue.12 , pp. 118-126
    • Clark, T.M.1    Freeman, W.R.2    Goldbaum, M.H.3
  • 10
    • 0028289552 scopus 로고
    • Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data
    • Cohen A.R., Roysam B., and Turner J.N. Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data. Journal of Microscopy 173 2 (1994) 103-114
    • (1994) Journal of Microscopy , vol.173 , Issue.2 , pp. 103-114
    • Cohen, A.R.1    Roysam, B.2    Turner, J.N.3
  • 12
    • 33749435453 scopus 로고    scopus 로고
    • Cornea, N., Silver, D., Min, P., 2005. Curveskeleton applications. In: IEEE Conference on Visualization, pp. 95-102.
    • Cornea, N., Silver, D., Min, P., 2005. Curveskeleton applications. In: IEEE Conference on Visualization, pp. 95-102.
  • 13
    • 57049161138 scopus 로고    scopus 로고
    • Dey, T.K., Sun, J., 2006a. Curveskel software. .
    • Dey, T.K., Sun, J., 2006a. Curveskel software. .
  • 14
    • 57049162181 scopus 로고    scopus 로고
    • Dey, T.K., Sun, J., 2006b. Defining and computing curve-skeletons with medial geodesic function. In: Eurographics Symposium on Geometry Processing, pp. 143-152.
    • Dey, T.K., Sun, J., 2006b. Defining and computing curve-skeletons with medial geodesic function. In: Eurographics Symposium on Geometry Processing, pp. 143-152.
  • 15
    • 57049085999 scopus 로고    scopus 로고
    • Dima, A., 2002. Computer Aided Image Segmentation and Graph Construction of Nerve Cells from 3d Confocal Microscopy Scans. Ph.D. Thesis, Technical University Berlin, Berlin, Germany.
    • Dima, A., 2002. Computer Aided Image Segmentation and Graph Construction of Nerve Cells from 3d Confocal Microscopy Scans. Ph.D. Thesis, Technical University Berlin, Berlin, Germany.
  • 16
    • 57049087729 scopus 로고    scopus 로고
    • Automatic generation of 3d-graph representations of nerve cells from confocal microscope scans
    • German Neuroscience Society
    • Dima A., Scholz M., and Obermayer K. Automatic generation of 3d-graph representations of nerve cells from confocal microscope scans. Göttingen Neurobiology Conference vol. 2 (2001), German Neuroscience Society 1041
    • (2001) Göttingen Neurobiology Conference , vol.2 , pp. 1041
    • Dima, A.1    Scholz, M.2    Obermayer, K.3
  • 17
    • 0033529082 scopus 로고    scopus 로고
    • Dendritic spine changes associated with hippocampal long-term synaptic plasticity
    • Engert F., and Bonhoeffer T. Dendritic spine changes associated with hippocampal long-term synaptic plasticity. Nature 399 (1999) 66-70
    • (1999) Nature , vol.399 , pp. 66-70
    • Engert, F.1    Bonhoeffer, T.2
  • 18
    • 0032272405 scopus 로고    scopus 로고
    • Garland, M., Heckbert, P.S., 1998. Simplifying surfaces with color and texture using quadric error metrics. In: IEEE Conference on Visualization.
    • Garland, M., Heckbert, P.S., 1998. Simplifying surfaces with color and texture using quadric error metrics. In: IEEE Conference on Visualization.
  • 20
    • 0002854447 scopus 로고
    • Symbolic description of 3-d structures applied to cerebral vessel tree obtained from MR angiography volume data
    • Gerig G., Koller T., Székely G., Brechbu{combining double acute accent}hler C., and Ku{combining double acute accent}bler O. Symbolic description of 3-d structures applied to cerebral vessel tree obtained from MR angiography volume data. Processing in Medical Imaging 687 (1993) 94-111
    • (1993) Processing in Medical Imaging , Issue.687 , pp. 94-111
    • Gerig, G.1    Koller, T.2    Székely, G.3    Brechbuhler, C.4    Kubler, O.5
  • 21
    • 0033985644 scopus 로고    scopus 로고
    • Decreased dendritic spine density on prefrontal cortical pyramidal neurons in schizophrenia
    • Glantz L.A., and Lewis D.A. Decreased dendritic spine density on prefrontal cortical pyramidal neurons in schizophrenia. Archives of General Psychiatry 57 1 (2000) 65-73
    • (2000) Archives of General Psychiatry , vol.57 , Issue.1 , pp. 65-73
    • Glantz, L.A.1    Lewis, D.A.2
  • 22
    • 0025483799 scopus 로고
    • Neuron imaging with neurolucida - a PC-based system for image combining microscopy
    • Glaser J.R., and Glaser E. Neuron imaging with neurolucida - a PC-based system for image combining microscopy. Computerized Medical Imaging and Graphics 14 (1990) 307-317
    • (1990) Computerized Medical Imaging and Graphics , vol.14 , pp. 307-317
    • Glaser, J.R.1    Glaser, E.2
  • 25
    • 0009161028 scopus 로고
    • Study of dendritic spines by serial electron microscopy and three-dimensional reconstructions
    • Harris K.M., and Stevens J. Study of dendritic spines by serial electron microscopy and three-dimensional reconstructions. Neurology and Neurobiology 37 (1988) 179-199
    • (1988) Neurology and Neurobiology , vol.37 , pp. 179-199
    • Harris, K.M.1    Stevens, J.2
  • 26
    • 0026734317 scopus 로고
    • Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation
    • Harris K.M., Jensen F.E., and Tsao B. Three-dimensional structure of dendritic spines and synapses in rat hippocampus (CA1) at postnatal day 15 and adult ages: implications for the maturation of synaptic physiology and long-term potentiation. Journal of Neuroscience 12 (1992) 2685-2705
    • (1992) Journal of Neuroscience , vol.12 , pp. 2685-2705
    • Harris, K.M.1    Jensen, F.E.2    Tsao, B.3
  • 27
  • 28
    • 0035654078 scopus 로고    scopus 로고
    • Dendritic spine: structure, dynamics and regulation
    • Hering H., and Sheng M. Dendritic spine: structure, dynamics and regulation. Neuron 2 (2001) 880-888
    • (2001) Neuron , vol.2 , pp. 880-888
    • Hering, H.1    Sheng, M.2
  • 29
    • 58149400026 scopus 로고    scopus 로고
    • Herzog, A., Krell, G., Michaelis, B., Wang, J., Zuschratter, W., Braun, K., 1997. Restoration of three-dimensional quasi-binary images from confocal microscopy and its application to dendritic trees. In: SPIE Three-Dimensional Microscopy: Image Acquisition and Processing IV, pp. 146-157.
    • Herzog, A., Krell, G., Michaelis, B., Wang, J., Zuschratter, W., Braun, K., 1997. Restoration of three-dimensional quasi-binary images from confocal microscopy and its application to dendritic trees. In: SPIE Three-Dimensional Microscopy: Image Acquisition and Processing IV, pp. 146-157.
  • 32
    • 57049123127 scopus 로고    scopus 로고
    • Koh, I.Y.Y., 2001. Automated Recognition Algorithms for Neural Studies. Ph.D. Thesis, Stony Brook University.
    • Koh, I.Y.Y., 2001. Automated Recognition Algorithms for Neural Studies. Ph.D. Thesis, Stony Brook University.
  • 35
    • 84884780222 scopus 로고    scopus 로고
    • Skeleton extraction of 3d objects with radial basis functions
    • Ma W., Wu F., and Ouhyoung M. Skeleton extraction of 3d objects with radial basis functions. IEEE SMA (2003)
    • (2003) IEEE SMA
    • Ma, W.1    Wu, F.2    Ouhyoung, M.3
  • 37
    • 57049174225 scopus 로고    scopus 로고
    • Mosaliganti, K., Janoos, F., Xu, X., Machiraju, R., Huang, K., Wong, S., 2006. Temporal matching of dendritic spines in confocal microscopy images of neuronal tissue sections. In: MICCAI Workshop on Medical Image Analysis with Applications in Biology, pp. 106-113.
    • Mosaliganti, K., Janoos, F., Xu, X., Machiraju, R., Huang, K., Wong, S., 2006. Temporal matching of dendritic spines in confocal microscopy images of neuronal tissue sections. In: MICCAI Workshop on Medical Image Analysis with Applications in Biology, pp. 106-113.
  • 38
    • 0028567170 scopus 로고
    • An increase in dendritic spine density on hippocampal CA1 pyramidal cells following spatial learning in adult rats suggests the formation of new synapses
    • Moser M.B., Trommald M., and Anderson P. An increase in dendritic spine density on hippocampal CA1 pyramidal cells following spatial learning in adult rats suggests the formation of new synapses. National Academy of Science 91 (1994) 12673-12675
    • (1994) National Academy of Science , vol.91 , pp. 12673-12675
    • Moser, M.B.1    Trommald, M.2    Anderson, P.3
  • 39
    • 57049129048 scopus 로고    scopus 로고
    • Nielson, G.M., Hamann, B., 1991. The asymptotic decider: resolving the ambiguity in marching cubes. In: IEEE Conference on Visualization.
    • Nielson, G.M., Hamann, B., 1991. The asymptotic decider: resolving the ambiguity in marching cubes. In: IEEE Conference on Visualization.
  • 42
    • 0029120633 scopus 로고
    • Quantification of dendritic spine populations using image analysis and a tilting disector
    • Rusakov D.A., and Stewart M.G. Quantification of dendritic spine populations using image analysis and a tilting disector. Journal of Neuroscience Methods 60 (1995) 11-21
    • (1995) Journal of Neuroscience Methods , vol.60 , pp. 11-21
    • Rusakov, D.A.1    Stewart, M.G.2
  • 43
    • 57049087175 scopus 로고    scopus 로고
    • Schmitt, S., Dima, A., Scholz, M., Obermayer, K., 2001. Automatic three-dimensional reconstruction of neurons from confocal images. In: Göttingen Neurobiology Conference.
    • Schmitt, S., Dima, A., Scholz, M., Obermayer, K., 2001. Automatic three-dimensional reconstruction of neurons from confocal images. In: Göttingen Neurobiology Conference.
  • 45
    • 23444448170 scopus 로고    scopus 로고
    • Dendritic spine abnormalities in amyloid precursor protein transgenic mice demonstrated by gene transfer and intravital multiphoton microscopy
    • Spires T.L., Meyer-Luehmann M., Stern E.A., McLean P.J., Skoch J., Nguyen P.T., Bacskai B.J., and Hyman B.T. Dendritic spine abnormalities in amyloid precursor protein transgenic mice demonstrated by gene transfer and intravital multiphoton microscopy. Journal of Neuroscience 25 31 (2005) 7278-7287
    • (2005) Journal of Neuroscience , vol.25 , Issue.31 , pp. 7278-7287
    • Spires, T.L.1    Meyer-Luehmann, M.2    Stern, E.A.3    McLean, P.J.4    Skoch, J.5    Nguyen, P.T.6    Bacskai, B.J.7    Hyman, B.T.8
  • 46
    • 0000205356 scopus 로고
    • Computer-assisted reconstruction from serial electron micrographs: a tool for the systematic study of neuronal form and function
    • Stevens J.K., and Trogadis J. Computer-assisted reconstruction from serial electron micrographs: a tool for the systematic study of neuronal form and function. Advances in Cellular Neurobiology 5 (1984) 341-369
    • (1984) Advances in Cellular Neurobiology , vol.5 , pp. 341-369
    • Stevens, J.K.1    Trogadis, J.2
  • 47
    • 0029179430 scopus 로고    scopus 로고
    • Taubin, G., 1995. A signal processing approach to fair surface design. In: SIGGRAPH Conference on Computer Graphics and Interactive Techniques, pp. 351-358.
    • Taubin, G., 1995. A signal processing approach to fair surface design. In: SIGGRAPH Conference on Computer Graphics and Interactive Techniques, pp. 351-358.
  • 49
    • 33750942705 scopus 로고    scopus 로고
    • Tyrrell, J., Roysam, B., di Tomaso, E., Tong, R., Brown, E., Jain, R., 2006. Robust 3-d modeling of tumor microvasculature using superellipsoid. In: IEEE International Symposium on Biomedical Imaging: Macro to Nano, vol. 6, pp. 185-188.
    • Tyrrell, J., Roysam, B., di Tomaso, E., Tong, R., Brown, E., Jain, R., 2006. Robust 3-d modeling of tumor microvasculature using superellipsoid. In: IEEE International Symposium on Biomedical Imaging: Macro to Nano, vol. 6, pp. 185-188.
  • 50
    • 11144332089 scopus 로고    scopus 로고
    • Uehara, C., Colbert, C., Saggau, P., Kakadiaris, I.A., 2004. Towards automatic reconstruction of dendrite morphology from live neurons. In: IEEE Conference of the Engineering in Medicine and Biology Society.
    • Uehara, C., Colbert, C., Saggau, P., Kakadiaris, I.A., 2004. Towards automatic reconstruction of dendrite morphology from live neurons. In: IEEE Conference of the Engineering in Medicine and Biology Society.
  • 51
    • 33750727670 scopus 로고    scopus 로고
    • Urban, E.S., O'Malley, S.M., Walsh, B., Santamara-Pang, A., Saggau, P., Colbert, C., Kakadiaris, I.A., 2006. Automatic reconstruction of dendrite morphology from optical section stacks. In: Workshop on Computer Vision Approaches to Medical Image Analysis, pp. 190-201.
    • Urban, E.S., O'Malley, S.M., Walsh, B., Santamara-Pang, A., Saggau, P., Colbert, C., Kakadiaris, I.A., 2006. Automatic reconstruction of dendrite morphology from optical section stacks. In: Workshop on Computer Vision Approaches to Medical Image Analysis, pp. 190-201.
  • 52
    • 57049175328 scopus 로고    scopus 로고
    • Watzel, R., Braun, K., Hess, A., Scheich, H., Zuschratter, W., 1995. Detection of dendritic spines in three-dimensional images. In: Deutsche Arbeitsgemeinschaft für Mustererkennung Symposium, pp. 160-167.
    • Watzel, R., Braun, K., Hess, A., Scheich, H., Zuschratter, W., 1995. Detection of dendritic spines in three-dimensional images. In: Deutsche Arbeitsgemeinschaft für Mustererkennung Symposium, pp. 160-167.
  • 53
    • 2942593692 scopus 로고    scopus 로고
    • Automated algorithms for multiscale morphometry of neuronal dendrites
    • Weaver C.M., Hof P.R., Wearne S.L., and Lindquist W.B. Automated algorithms for multiscale morphometry of neuronal dendrites. Neural Computation 16 7 (2004) 1353-1383
    • (2004) Neural Computation , vol.16 , Issue.7 , pp. 1353-1383
    • Weaver, C.M.1    Hof, P.R.2    Wearne, S.L.3    Lindquist, W.B.4
  • 54
    • 57049083166 scopus 로고    scopus 로고
    • Weickert, J., 1996. Anisotropic Diffusion in Image Processing. Ph.D. Thesis, Universität Kaiserslautern.
    • Weickert, J., 1996. Anisotropic Diffusion in Image Processing. Ph.D. Thesis, Universität Kaiserslautern.
  • 55
    • 0023198909 scopus 로고
    • Dendritic and somatic appendages of identified rubrospinal neurons of the cat
    • Wilson C.J., Murakami F., Katsumaru H., and Tsukahara N. Dendritic and somatic appendages of identified rubrospinal neurons of the cat. Neuroscience 22 (1987) 113-130
    • (1987) Neuroscience , vol.22 , pp. 113-130
    • Wilson, C.J.1    Murakami, F.2    Katsumaru, H.3    Tsukahara, N.4
  • 57
    • 0034928790 scopus 로고    scopus 로고
    • Morphological changes in dendritic spines associated with long-term synaptic plasticity
    • Yuste R., and Bonhoeffer T. Morphological changes in dendritic spines associated with long-term synaptic plasticity. Annual Reviews in Neuroscience 24 (2001) 1071-1089
    • (2001) Annual Reviews in Neuroscience , vol.24 , pp. 1071-1089
    • Yuste, R.1    Bonhoeffer, T.2
  • 58
    • 5144223008 scopus 로고    scopus 로고
    • Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton
    • Zito K., Knott G., Shepherd G., Shenolikar S., and Svoboda K. Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron 44 2 (2004) 321-334
    • (2004) Neuron , vol.44 , Issue.2 , pp. 321-334
    • Zito, K.1    Knott, G.2    Shepherd, G.3    Shenolikar, S.4    Svoboda, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.