메뉴 건너뛰기




Volumn 88, Issue 4, 2008, Pages 573-581

Functional genomic resources for potato

Author keywords

Data mining; Expressed sequence tag; Genomics; LongSAGE; Microarray; Potato; Solanum

Indexed keywords

GENE EXPRESSION; GENOMICS; MINING; MUTATION; POTATO;

EID: 56849105227     PISSN: 00084220     EISSN: None     Source Type: Journal    
DOI: 10.4141/CJPS07048     Document Type: Conference Paper
Times cited : (3)

References (52)
  • 1
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. and Claverie, J.M. 1997. The significance of digital gene expression profiles. Genome Res. 7: 986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 2
    • 0030138199 scopus 로고    scopus 로고
    • Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
    • Bachem, C. W., van der Hoeven, R. S., de Bruijn, S. M., Vreugdenhil, D., Zabeau, M. and Visser, R. G. 1996. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J. 9: 745-753.
    • (1996) Plant J , vol.9 , pp. 745-753
    • Bachem, C.W.1    van der Hoeven, R.S.2    de Bruijn, S.M.3    Vreugdenhil, D.4    Zabeau, M.5    Visser, R.G.6
  • 3
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: Two approaches to facilitate gene discovery
    • Bonaldo, M. F., Lennon, G. and Soares, M. B. 1996. Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res. 6: 791-806.
    • (1996) Genome Res , vol.6 , pp. 791-806
    • Bonaldo, M.F.1    Lennon, G.2    Soares, M.B.3
  • 4
    • 0000258233 scopus 로고
    • RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato
    • Bonierbale, M. W., Plaisted, R. L. and Tanksley, S. D. 1988. RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 120: 1095-1103.
    • (1988) Genetics , vol.120 , pp. 1095-1103
    • Bonierbale, M.W.1    Plaisted, R.L.2    Tanksley, S.D.3
  • 5
    • 0038827343 scopus 로고    scopus 로고
    • Use of mid-parent values and progeny tests to increase the efficiency of potato breeding for combined processing quality and disease and pest resistance
    • Bradshaw, J. E., Dale, M. F. and Mackay, G. R. 2003. Use of mid-parent values and progeny tests to increase the efficiency of potato breeding for combined processing quality and disease and pest resistance. Theor. Appl. Genet. 107: 36-42.
    • (2003) Theor. Appl. Genet , vol.107 , pp. 36-42
    • Bradshaw, J.E.1    Dale, M.F.2    Mackay, G.R.3
  • 6
    • 0035096955 scopus 로고    scopus 로고
    • A potato molecular-function map for carbohydrate metabolism and transport
    • Chen, X., Salamini, F. and Gebhardt, C. 2001. A potato molecular-function map for carbohydrate metabolism and transport. Theor. Appl. Genet. 102: 284-295.
    • (2001) Theor. Appl. Genet , vol.102 , pp. 284-295
    • Chen, X.1    Salamini, F.2    Gebhardt, C.3
  • 7
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill, G. A. 2002. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32 (Suppl): 490-495.
    • (2002) Nat. Genet , vol.32 , Issue.SUPPL. , pp. 490-495
    • Churchill, G.A.1
  • 8
    • 0035812941 scopus 로고    scopus 로고
    • The potato tuber transcriptome: Analysis of 6077 expressed sequence tags
    • Crookshanks, M., Emmersen, J., Welinder, K. G. and Nielsen, K. L. 2001. The potato tuber transcriptome: analysis of 6077 expressed sequence tags. FEBS Lett. 506: 123-126.
    • (2001) FEBS Lett , vol.506 , pp. 123-126
    • Crookshanks, M.1    Emmersen, J.2    Welinder, K.G.3    Nielsen, K.L.4
  • 10
    • 0037440072 scopus 로고    scopus 로고
    • Specificity assessment from fractionation experiments (SAFE): A novel method to evaluate microarray probe specificity based on hybridisation stringencies
    • Drobyshev, A. L., Machka, C., Horsch, M., Seltmann, M., Liebscher, V., Hrabe de Angelis, M. and Beckers, J. 2003. Specificity assessment from fractionation experiments (SAFE): a novel method to evaluate microarray probe specificity based on hybridisation stringencies. Nucleic Acids Res. 31: E1-1.
    • (2003) Nucleic Acids Res , vol.31
    • Drobyshev, A.L.1    Machka, C.2    Horsch, M.3    Seltmann, M.4    Liebscher, V.5    Hrabe de Angelis, M.6    Beckers, J.7
  • 12
    • 23944433157 scopus 로고    scopus 로고
    • Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.)
    • Feingold, S., Lloyd, J., Norero, N., Bonierbale, M. and Lorenzen, J. 2005. Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.). Theor. Appl. Genet. 111: 456-466.
    • (2005) Theor. Appl. Genet , vol.111 , pp. 456-466
    • Feingold, S.1    Lloyd, J.2    Norero, N.3    Bonierbale, M.4    Lorenzen, J.5
  • 14
    • 0037854681 scopus 로고    scopus 로고
    • Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome
    • Gebhardt, C., Walkemeier, B., Henselewski, H., Barakat, A., Delseny, M. and Stuber, K. 2003. Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J. 34: 52 9-541.
    • (2003) Plant J , vol.34 , Issue.52 , pp. 9-541
    • Gebhardt, C.1    Walkemeier, B.2    Henselewski, H.3    Barakat, A.4    Delseny, M.5    Stuber, K.6
  • 15
    • 26844580921 scopus 로고    scopus 로고
    • A 6374 unigene set corresponding to low abundance transcripts expressed following fertilization in Solanum chacoense Bitt, and characterization of 30 receptor-like kinases
    • Germain, H., Rudd, S., Zotti, C., Caron, S., O'Brien, M., Chantha, S. C., Lagace, M., Major, F. and Matton, D. P. 2005. A 6374 unigene set corresponding to low abundance transcripts expressed following fertilization in Solanum chacoense Bitt, and characterization of 30 receptor-like kinases. Plant Mol. Biol. 59: 515-532.
    • (2005) Plant Mol. Biol , vol.59 , pp. 515-532
    • Germain, H.1    Rudd, S.2    Zotti, C.3    Caron, S.4    O'Brien, M.5    Chantha, S.C.6    Lagace, M.7    Major, F.8    Matton, D.P.9
  • 17
    • 26244451016 scopus 로고    scopus 로고
    • Identification of salt stress-induced transcripts in potato leaves by cDNA-AFLP
    • Hmida-Sayari, A., Costa, A., Leone, A., Jaoua, S. and Gargouri-Bouzid, R. 2005. Identification of salt stress-induced transcripts in potato leaves by cDNA-AFLP. Mol. Biotechnol. 30: 31-40.
    • (2005) Mol. Biotechnol , vol.30 , pp. 31-40
    • Hmida-Sayari, A.1    Costa, A.2    Leone, A.3    Jaoua, S.4    Gargouri-Bouzid, R.5
  • 19
    • 9144244440 scopus 로고    scopus 로고
    • Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases
    • Huminiecki, L., Lloyd, A. T. and Wolfe, K. H. 2003. Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases. BMC Genomics 4: 31.
    • (2003) BMC Genomics , vol.4 , pp. 31
    • Huminiecki, L.1    Lloyd, A.T.2    Wolfe, K.H.3
  • 20
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
    • Kane, M. D., Jatkoe, T. A., Stumpf, C. R., Lu, J., Thomas, J. D. and Madore, S. J. 2000. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res. 28: 4552-4557.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4552-4557
    • Kane, M.D.1    Jatkoe, T.A.2    Stumpf, C.R.3    Lu, J.4    Thomas, J.D.5    Madore, S.J.6
  • 21
    • 33745943158 scopus 로고    scopus 로고
    • Tuber on a chip: Differential gene expression during potato tuber development
    • Kloosterman, B., Vorst, O., Hall, R. D., Visser, R. G. and Bachem, C. W. 2005. Tuber on a chip: differential gene expression during potato tuber development. Plant Biotechnol. J. 3: 505-519.
    • (2005) Plant Biotechnol. J , vol.3 , pp. 505-519
    • Kloosterman, B.1    Vorst, O.2    Hall, R.D.3    Visser, R.G.4    Bachem, C.W.5
  • 22
    • 0025158595 scopus 로고
    • An equalised cDNA library by the reassociation of short-double stranded cDNAs
    • Ko, M. S. H. 1990. An equalised cDNA library by the reassociation of short-double stranded cDNAs. Nucleic Acids Res. 18: 5705-5711
    • (1990) Nucleic Acids Res , vol.18 , pp. 5705-5711
    • Ko, M.S.H.1
  • 23
  • 24
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee, M. L., Kuo, F. C., Whitmore, G. A. and Sklar, J. 2000. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. USA 97: 9834-9839.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 25
    • 56849086395 scopus 로고    scopus 로고
    • Potato EST sequencing and analysis: Which genes involved in carbohydrate metabolism are most active in immature potatoes?
    • Abstr
    • Li, X. Q. 2001. Potato EST sequencing and analysis: Which genes involved in carbohydrate metabolism are most active in immature potatoes? Am. J. Potato Res. 78: 467 (Abstr.).
    • (2001) Am. J. Potato Res , vol.78 , pp. 467
    • Li, X.Q.1
  • 26
    • 56849109472 scopus 로고    scopus 로고
    • EST-based cloning and gene expression analysis of potato proteases
    • Li, X. Q., Haroon, M. and Bonierbale, M. W. 2003. EST-based cloning and gene expression analysis of potato proteases. Acta Hortic. 619: 59-62.
    • (2003) Acta Hortic , vol.619 , pp. 59-62
    • Li, X.Q.1    Haroon, M.2    Bonierbale, M.W.3
  • 27
    • 18144418212 scopus 로고    scopus 로고
    • Inheritance and genetic mapping of tuber eye depth in cultivated diploid potatoes
    • Li, X. Q., De Jong, H., De Jong, D. M. and De Jong, W. S. 2005. Inheritance and genetic mapping of tuber eye depth in cultivated diploid potatoes. Theor. Appl. Genet. 110: 1068-1073.
    • (2005) Theor. Appl. Genet , vol.110 , pp. 1068-1073
    • Li, X.Q.1    De Jong, H.2    De Jong, D.M.3    De Jong, W.S.4
  • 33
    • 33751001777 scopus 로고    scopus 로고
    • Deep-SAGE - digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples
    • Nielsen, K. L., Hogh, A. L. and Emmersen, J. 2006. Deep-SAGE - digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucl. Acids Res. 34: e133.
    • (2006) Nucl. Acids Res , vol.34
    • Nielsen, K.L.1    Hogh, A.L.2    Emmersen, J.3
  • 34
    • 0034068685 scopus 로고    scopus 로고
    • Unraveling plant metabolism by EST analysis
    • Ohlrogge, J. and Benning, C. 2000. Unraveling plant metabolism by EST analysis. Curr. Opinion Plant Biol. 3: 224-228.
    • (2000) Curr. Opinion Plant Biol , vol.3 , pp. 224-228
    • Ohlrogge, J.1    Benning, C.2
  • 35
    • 25144435316 scopus 로고    scopus 로고
    • Potato homologs of Arabidopsis thaliana genes functional in defense signaling-identification, genetic mapping, and molecular cloning
    • Pajerowska, K. M., Parker, J. E. and Gebhardt, C. 2005. Potato homologs of Arabidopsis thaliana genes functional in defense signaling-identification, genetic mapping, and molecular cloning. Mol. Plant Microbe Interact. 18: 1107-1119.
    • (2005) Mol. Plant Microbe Interact , vol.18 , pp. 1107-1119
    • Pajerowska, K.M.1    Parker, J.E.2    Gebhardt, C.3
  • 36
    • 0029812119 scopus 로고    scopus 로고
    • Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum)
    • Provan, J., Powell, W. and Waugh, R. 1996. Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum). Theor. Appl. Genet. 92: 1078-1084.
    • (1996) Theor. Appl. Genet , vol.92 , pp. 1078-1084
    • Provan, J.1    Powell, W.2    Waugh, R.3
  • 39
    • 26944447130 scopus 로고    scopus 로고
    • Analyzing the potato abiotic stress transcriptome using expressed sequence tags
    • Rensink, W., Hart, A., Liu, J., Ouyang, S., Zismann, V. and Buell, C.R. 2005a. Analyzing the potato abiotic stress transcriptome using expressed sequence tags. Genome 48: 598-605.
    • (2005) Genome , vol.48 , pp. 598-605
    • Rensink, W.1    Hart, A.2    Liu, J.3    Ouyang, S.4    Zismann, V.5    Buell, C.R.6
  • 41
    • 23844448372 scopus 로고    scopus 로고
    • Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase
    • Restrepo, S., Myers, K. L., del Pozo, O., Martin, G. B., Hart, A. L., Buell, C. R., Fry, W. E. and Smart, C. D. 2005. Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase. Mol. Plant Microbe Interact. 18: 913-922.
    • (2005) Mol. Plant Microbe Interact , vol.18 , pp. 913-922
    • Restrepo, S.1    Myers, K.L.2    del Pozo, O.3    Martin, G.B.4    Hart, A.L.5    Buell, C.R.6    Fry, W.E.7    Smart, C.D.8
  • 42
    • 12244291895 scopus 로고    scopus 로고
    • Ronning, C. M., Stegalkina, S. S., Ascenzi, R. A., Bougri, O., Hart, A. L., Utterbach, T. R., Vanaken, S. E., Riedmuller, S. B., White, J. A., Cho, J., Pertea, G. M., Lee, Y., Karamycheva, S., Sultana, R., Tsai, J., Quackenbush, J., Griffiths, H. M., Restrepo, S., Smart, C. D., Fry, W. E., Van Der Hoeven, R., Tanksley, S., Zhang, P., Jin, H., Yamamoto, M. L., Baker, B. J. and Buell, C. R. 2003. Comparative analyses of potato expressed sequence tag libraries. Plant Physiol. 131: 419-429.
    • Ronning, C. M., Stegalkina, S. S., Ascenzi, R. A., Bougri, O., Hart, A. L., Utterbach, T. R., Vanaken, S. E., Riedmuller, S. B., White, J. A., Cho, J., Pertea, G. M., Lee, Y., Karamycheva, S., Sultana, R., Tsai, J., Quackenbush, J., Griffiths, H. M., Restrepo, S., Smart, C. D., Fry, W. E., Van Der Hoeven, R., Tanksley, S., Zhang, P., Jin, H., Yamamoto, M. L., Baker, B. J. and Buell, C. R. 2003. Comparative analyses of potato expressed sequence tag libraries. Plant Physiol. 131: 419-429.
  • 44
    • 26944501974 scopus 로고    scopus 로고
    • Mapping of extreme resistance to PVY (Ry (sto)) on chromosome XII using anther-culture-derived primary dihaploid potato lines
    • Song, Y. S., Hepting, L., Schweizer, G., Hartl, L., Wenzel, G. and Schwarzfischer, A. 2005. Mapping of extreme resistance to PVY (Ry (sto)) on chromosome XII using anther-culture-derived primary dihaploid potato lines. Theor. Appl. Genet. 111: 879-887.
    • (2005) Theor. Appl. Genet , vol.111 , pp. 879-887
    • Song, Y.S.1    Hepting, L.2    Schweizer, G.3    Hartl, L.4    Wenzel, G.5    Schwarzfischer, A.6
  • 45
    • 5044252972 scopus 로고    scopus 로고
    • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
    • Subramanian, S. and Kumar, S. 2004. Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. Genetics 168: 373-381.
    • (2004) Genetics , vol.168 , pp. 373-381
    • Subramanian, S.1    Kumar, S.2
  • 46
    • 0028297992 scopus 로고
    • Multiple alleles for tuber shape in diploid potato detected by qualitative and quantitative genetic analysis using RFLPs
    • Van Eck, H. J., Jacobs, J. M., Stam, P., Ton, J., Stiekema, W. J. and Jacobsen, E. 1994. Multiple alleles for tuber shape in diploid potato detected by qualitative and quantitative genetic analysis using RFLPs. Genetics 137: 303-309.
    • (1994) Genetics , vol.137 , pp. 303-309
    • Van Eck, H.J.1    Jacobs, J.M.2    Stam, P.3    Ton, J.4    Stiekema, W.J.5    Jacobsen, E.6
  • 47
    • 33745375367 scopus 로고    scopus 로고
    • van Os, H., Andrzejewski, S., Bakker, E., Barrena, I., Bryan, G.J., Caromel, B., Ghareeb, B., Isidore, E., de Jong, W., van Koert, P., Lefebvre, V., Milbourne, D., Ritter, E., van der Voort, J. N., Rousselle-Bourgeois, F., van Vliet, J., Waugh, R., Visser, R. G., Bakker, J. and van Eck, H. J. 2006. Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map. Genetics 173: 1075-1087.
    • van Os, H., Andrzejewski, S., Bakker, E., Barrena, I., Bryan, G.J., Caromel, B., Ghareeb, B., Isidore, E., de Jong, W., van Koert, P., Lefebvre, V., Milbourne, D., Ritter, E., van der Voort, J. N., Rousselle-Bourgeois, F., van Vliet, J., Waugh, R., Visser, R. G., Bakker, J. and van Eck, H. J. 2006. Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map. Genetics 173: 1075-1087.
  • 48
    • 0029609040 scopus 로고
    • Analysis of the genetic composition of anther-derived potato by randomly amplified polymorphic DNA and simple sequence repeats
    • Veilleux, R. E., Shen, L. Y. and Paz, M. M. 1995. Analysis of the genetic composition of anther-derived potato by randomly amplified polymorphic DNA and simple sequence repeats. Genome 38: 1153-1162.
    • (1995) Genome , vol.38 , pp. 1153-1162
    • Veilleux, R.E.1    Shen, L.Y.2    Paz, M.M.3
  • 52
    • 18844363132 scopus 로고    scopus 로고
    • Comparison of gene expression measurements from cDNA and 60-mer oligonucleotide microarrays
    • Zhu, B., Ping, G., Shinohara, Y., Zhang, Y. and Baba, Y. 2005. Comparison of gene expression measurements from cDNA and 60-mer oligonucleotide microarrays. Genomics 85: 657-665.
    • (2005) Genomics , vol.85 , pp. 657-665
    • Zhu, B.1    Ping, G.2    Shinohara, Y.3    Zhang, Y.4    Baba, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.