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Volumn 69, Issue 1, 2009, Pages 80-90

Analysis of DNA sequence transformations on grids

Author keywords

Bioinformatics; Biology and genetics; Client Server; Distributed applications; Distributed systems; Grid applications; Grid computing; Grids

Indexed keywords

APPLICATIONS; BIOINFORMATICS; CELLULAR AUTOMATA; DNA; GENES; GRID COMPUTING; MATHEMATICAL TRANSFORMATIONS; NUCLEIC ACIDS; ORGANIC ACIDS; PATTERN RECOGNITION SYSTEMS; ROBOTS; TRANSLATION (LANGUAGES); TREES (MATHEMATICS);

EID: 56549095502     PISSN: 07437315     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jpdc.2008.06.012     Document Type: Article
Times cited : (7)

References (31)
  • 1
    • 33845381128 scopus 로고    scopus 로고
    • W. Allcock, J. Bresnahan, R. Kettimuthu, M. Link, C. Dumitrescu, I. Raicu, I. Foster, The globus striped gridFTP framework and server, in: Proceedings of Super Computing 2005, SC05, 2005
    • W. Allcock, J. Bresnahan, R. Kettimuthu, M. Link, C. Dumitrescu, I. Raicu, I. Foster, The globus striped gridFTP framework and server, in: Proceedings of Super Computing 2005, SC05, 2005
  • 2
    • 0242659321 scopus 로고    scopus 로고
    • DNA sequence evolution with neighbor-dependent mutation
    • Arndt P., Burge C., and Hwa T. DNA sequence evolution with neighbor-dependent mutation. Journal of Computational Biology 10 (2003) 313-322
    • (2003) Journal of Computational Biology , vol.10 , pp. 313-322
    • Arndt, P.1    Burge, C.2    Hwa, T.3
  • 3
    • 0022472187 scopus 로고
    • Neighboring base effects on substitution rates in pseudogenes
    • Bulmer M. Neighboring base effects on substitution rates in pseudogenes. Molecular Biology and Evolution 3 4 (1986) 322-329
    • (1986) Molecular Biology and Evolution , vol.3 , Issue.4 , pp. 322-329
    • Bulmer, M.1
  • 4
    • 0020495985 scopus 로고
    • Towards modeling dna sequences as automata
    • Burks C., and Farmer D. Towards modeling dna sequences as automata. Physica D: Nonlinear Phenomena 10 1-2 (1984) 157-167
    • (1984) Physica D: Nonlinear Phenomena , vol.10 , Issue.1-2 , pp. 157-167
    • Burks, C.1    Farmer, D.2
  • 5
    • 56549115926 scopus 로고    scopus 로고
    • Climateprediction.net, http://www.climateprediction.net
    • Climateprediction.net, http://www.climateprediction.net
  • 6
    • 56549084074 scopus 로고    scopus 로고
    • ClustalW, http://www.ebi.ac.uk/clustalw
    • ClustalW, http://www.ebi.ac.uk/clustalw
  • 8
    • 33744935671 scopus 로고    scopus 로고
    • Globus toolkit version 4: Software for service-oriented systems
    • IFIP International Conference on Network and Parallel Computing, Springer-Verlag
    • Foster I. Globus toolkit version 4: Software for service-oriented systems. IFIP International Conference on Network and Parallel Computing. LNCS vol. 3779 (2006), Springer-Verlag
    • (2006) LNCS , vol.3779
    • Foster, I.1
  • 9
    • 56549109811 scopus 로고    scopus 로고
    • N. Ganguly, B. Sikdar, A. Deutsch, G. Canright, P. Chaudhuri, A survey on cellular automata, Tech. rep., Centre for high performance computing, Dresden University of Technology (December 2003)
    • N. Ganguly, B. Sikdar, A. Deutsch, G. Canright, P. Chaudhuri, A survey on cellular automata, Tech. rep., Centre for high performance computing, Dresden University of Technology (December 2003)
  • 10
    • 56549101269 scopus 로고    scopus 로고
    • Z. Hao, S. Yan, R. Gunaretnam, A. Mondry, P. Dhar, Facilitating arrhythmia simulation: The method of quantitative cellular automata modeling and parallel running, Biomedical Engineering Online 3 (29)
    • Z. Hao, S. Yan, R. Gunaretnam, A. Mondry, P. Dhar, Facilitating arrhythmia simulation: The method of quantitative cellular automata modeling and parallel running, Biomedical Engineering Online 3 (29)
  • 11
    • 0028294455 scopus 로고
    • Wide variations in neighbor-dependent substitution rates
    • Hess S., Jonathan D., and Blake R. Wide variations in neighbor-dependent substitution rates. Journal of Molecular Biology 236 (1994) 1022-1033
    • (1994) Journal of Molecular Biology , vol.236 , pp. 1022-1033
    • Hess, S.1    Jonathan, D.2    Blake, R.3
  • 12
    • 56549123255 scopus 로고    scopus 로고
    • Human genome project information, http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml
    • Human genome project information, http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml
  • 14
    • 0036800403 scopus 로고    scopus 로고
    • Regular biosequence pattern matching with cellular automata
    • Laurio K., Linakera F., and Narayanana A. Regular biosequence pattern matching with cellular automata. Information Sciences 146 1-4 (2002) 89-101
    • (2002) Information Sciences , vol.146 , Issue.1-4 , pp. 89-101
    • Laurio, K.1    Linakera, F.2    Narayanana, A.3
  • 15
    • 56549118008 scopus 로고    scopus 로고
    • Mcell, http://www.mcell.cnl.salk.edu
    • Mcell, http://www.mcell.cnl.salk.edu
  • 16
    • 33644772171 scopus 로고    scopus 로고
    • Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition
    • Morton B., Bi I., McMullen M., and Gaut B. Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics 172 1 (2006) 569-577
    • (2006) Genetics , vol.172 , Issue.1 , pp. 569-577
    • Morton, B.1    Bi, I.2    McMullen, M.3    Gaut, B.4
  • 17
    • 0027957393 scopus 로고
    • FastDNAmL: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen G., Matsuda H., Hagstrom R., and Overbeek R. FastDNAmL: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Computer Applications in the Biosciences 10 1 (1994) 41-48
    • (1994) Computer Applications in the Biosciences , vol.10 , Issue.1 , pp. 41-48
    • Olsen, G.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 18
    • 56549085341 scopus 로고    scopus 로고
    • Phylip Package, http://evolution.genetics.washington.edu/phylip.html
    • Phylip Package, http://evolution.genetics.washington.edu/phylip.html
  • 19
    • 56549090328 scopus 로고    scopus 로고
    • PostgreSQL, http://www.postgresql.org
    • PostgreSQL, http://www.postgresql.org
  • 20
    • 0036137714 scopus 로고    scopus 로고
    • Deep insight from simple models of evolution
    • Schwefel H.-P. Deep insight from simple models of evolution. BioSystems 64 1 (2002) 189-198
    • (2002) BioSystems , vol.64 , Issue.1 , pp. 189-198
    • Schwefel, H.-P.1
  • 21
    • 56549107574 scopus 로고    scopus 로고
    • HIV Sequence Database, http://hiv.lanl.gov
    • HIV Sequence Database, http://hiv.lanl.gov
  • 22
    • 56549124955 scopus 로고    scopus 로고
    • SETI@Home, http://setiathome.berkeley.edu
    • SETI@Home, http://setiathome.berkeley.edu
  • 23
    • 1542510106 scopus 로고    scopus 로고
    • Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
    • Siepel A., and Haussler D. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Molecular Biology and Evolution 21 3 (2004) 468-488
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.3 , pp. 468-488
    • Siepel, A.1    Haussler, D.2
  • 25
    • 19944400457 scopus 로고    scopus 로고
    • C. Stewart, D. Hart, M. Aumuller, R. Keller, M. Muller, H. Li, R. Repasky, R. Sheppard, D. Berry, M. Hess, U. Wossner, J. Colbourne, A global grid for analysis of arthropod evolution, in: Proceedings of the Fifth IEEE/ACM International Workshop on Grid Computing, 2004
    • C. Stewart, D. Hart, M. Aumuller, R. Keller, M. Muller, H. Li, R. Repasky, R. Sheppard, D. Berry, M. Hess, U. Wossner, J. Colbourne, A global grid for analysis of arthropod evolution, in: Proceedings of the Fifth IEEE/ACM International Workshop on Grid Computing, 2004
  • 26
    • 56549088691 scopus 로고    scopus 로고
    • Understanding Evolution, http://evolution.berkeley.edu
    • Understanding Evolution, http://evolution.berkeley.edu
  • 27
    • 84942318236 scopus 로고    scopus 로고
    • V. Welch, F. Siebenlist, I. Foster, J. Bresnahan, K. Czajkowski, J. Gawor, C. Kesselman, S. Meder, L. Pearlman, S. Tuecke, Security for grid services, in: HPDC '03: Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing, 2003
    • V. Welch, F. Siebenlist, I. Foster, J. Bresnahan, K. Czajkowski, J. Gawor, C. Kesselman, S. Meder, L. Pearlman, S. Tuecke, Security for grid services, in: HPDC '03: Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing, 2003
  • 28
    • 22144436680 scopus 로고    scopus 로고
    • Dynamic cellular automata: An alternative approach to cellular simulation
    • Wishart D., Yang R., Arndt D., Tang P., and Cruz J. Dynamic cellular automata: An alternative approach to cellular simulation. Silico Biol. 5 2 (2005) 139-161
    • (2005) Silico Biol. , vol.5 , Issue.2 , pp. 139-161
    • Wishart, D.1    Yang, R.2    Arndt, D.3    Tang, P.4    Cruz, J.5
  • 30
    • 0037678455 scopus 로고    scopus 로고
    • Self organization of membrane proteins via dimerization
    • Woolf P., and Linderman J. Self organization of membrane proteins via dimerization. Biophysical Chemistry 104 1 (2003) 217-227
    • (2003) Biophysical Chemistry , vol.104 , Issue.1 , pp. 217-227
    • Woolf, P.1    Linderman, J.2
  • 31
    • 84942307718 scopus 로고    scopus 로고
    • X. Zhang, J. Freschl, J. Schopf, A performance study of monitoring and information services for distributed systems, in: HPDC '03: Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing, 2003
    • X. Zhang, J. Freschl, J. Schopf, A performance study of monitoring and information services for distributed systems, in: HPDC '03: Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing, 2003


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.