A novel protein in Photosystem II of a diatom Chaetoceros gracilis is one of the extrinsic proteins located on lumenal side and directly associates with PSII core components

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1777, Issue 12, 2008, Pages 1545-1551

  Okumura, Akinori ^a   Nagao, Ryo ^b   Suzuki, Takehiro ^c,d   Yamagoe, Satoshi ^e   Iwai, Masako ^b   Nakazato, Katsuyoshi ^a   Enami, Isao ^b  

^a NIHON UNIVERSITY   (Japan)

^b TOKYO UNIVERSITY OF SCIENCE   (Japan)

^c Japan Science and Technology Agency   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^e NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

Chaetoceros gracilis; Diatom; Extrinsic protein; Oxygen evolution; Photosystem II; Psb31

Indexed keywords

1 (3 DIMETHYLAMINOPROPYL) 3 ETHYLCARBODIIMIDE; PROTEIN; PROTEIN PSB31; UNCLASSIFIED DRUG;

ARTICLE; CHAETOCEROS GRACILIS; CHLOROPLAST; CROSS LINKING; DIATOM; ENDOPLASMIC RETICULUM; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYSTEM II; PRIORITY JOURNAL; THYLAKOID MEMBRANE;

ALGAL PROTEINS; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; CROSS-LINKING REAGENTS; DIATOMS; ETHYLDIMETHYLAMINOPROPYL CARBODIIMIDE; MOLECULAR SEQUENCE DATA; PEPTIDES; PHOTOSYSTEM II PROTEIN COMPLEX; PHYLOGENY; PROTEIN BINDING; PROTEIN SORTING SIGNALS; SEQUENCE ANALYSIS, DNA;

ALGAE; BACILLARIOPHYTA; CHAETOCEROS GRACILIS; RHODOPHYTA;

EID: 56549090670     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2008.09.004     Document Type: Article

References (35)

1. Shen J.-R., Ikeuchi M., and Inoue Y. Stoichiometric association of extrinsic cytochrome c550 and 12 kDa protein with a highly purified oxygen-evolving photosystem II core complex from Synechococcus vulcanus. FEBS Lett. 301 (1992) 145-149
2. Shen J.-R., and Inoue Y. Binding and functional properties of two new extrinsic components, cytochrome c-550 and a 12-kDa protein, in cyanobacterial photosystem II. Biochemistry 32 (1993) 1825-1832
3. Kashino Y., Lauber W.M., Carroll J.A., Wang Q., Whitmarsh J., Satoh K., and Pakrasi H.B. Proteomic analysis of a highly active photosystem II preparation from the cyanobacterium Synechocystis sp. PCC 6803 reveals the presence of novel polypeptides. Biochemistry 41 (2002) 8004-8012
4. Enami I., Murayama H., Ohta H., Kamo M., Nakazato K., and Shen J.-R. Isolation and characterization of a photosystem II complex from the red alga Cyanidium caldarium: association of cytochrome c-550 and a 12 kDa protein with the complex. Biochim. Biophys. Acta 1232 (1995) 208-216
5. Enami I., Kikuchi S., Fukuda T., Ohta H., and Shen J.-R. Binding and functional properties of four extrinsic proteins of photosystem II from a red alga, Cyanidium caldarium, as studied by release-reconstitution experiments. Biochemistry 37 (1998) 2787-2793
6. Ohta H., Suzuki T., Ueno M., Okumura A., Yoshihara S., Shen J.-R., and Enami I. Extrinsic proteins of photosystem II: an intermediate member of PsbQ protein family in red algal PS II. Eur. J. Biochem. 270 (2003) 4156-4163
7. Suzuki T., Minagawa J., Tomo T., Sonoike K., Ohta H., and Enami I. Binding and functional properties of the extrinsic proteins in oxygen-evolving photosystem II particle from a green alga, Chlamydomonas reinhardtii having his-tagged CP47. Plant Cell Physiol. 44 (2003) 76-84
8. Suzuki T., Tada O., Makimura M., Tohri A., Ohta H., Yamamoto Y., and Enami I. Isolation and characterization of oxygen-evolving photosystem II complexes retaining the PsbO, P and Q proteins from Euglena gracilis. Plant Cell Physiol. 45 (2004) 1168-1175
9. Berthold D.A., Babcock G.T., and Yocum C.F. A highly resolved, oxygen-evolving photosystem II preparation from spinach thylakoid membranes: EPR and electron-transport properties. FEBS Lett. 134 (1981) 231-234
10. Kuwabara T., and Murata N. Inactivation of photosynthetic oxygen evolution and concomitant release of three polypeptides in the photosystem II particles of spinach chloroplasts. Plant Cell Physiol. 23 (1982) 533-539
11. Roose J.L., Kashino Y., and Pakrasi H.B. The PsbQ protein defines cyanobacterial photosystem II complexes with highest activity and stability. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 2548-2553
12. Kamiya N., and Shen J.-R. Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-Å resolution. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 98-103
13. Ferreira K.N., Iverson T.M., Maghlaoui K., Barber J., and Iwata S. Architecture of the photosynthetic oxygen-evolving center. Science 303 (2004) 1831-1838
14. Loll B., Kern J., Saenger W., Zouni A., and Biesiadka J. Towards complete cofactor arrangement in the 3.0 Å resolution structure of photosystem II. Nature 438 (2005) 1040-1044
15. Nagao R., Ishii A., Tada O., Suzuki T., Dohmae N., Okumura A., Iwai M., Takahashi T., Kashino Y., and Enami I. Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a marine diatom Chaetoceros gracilis. Biochim. Biophys. Acta 1767 (2007) 1353-1362
16. Falkowski P.G., Katz M.E., Knoll A.H., Quigg A., Raven J.A., Schofield O., and Taylor F.J. The evolution of modern eukaryotic phytoplankton. Science 305 (2004) 354-360
17. Enami I., Suzuki T., Tada O., Nakada Y., Nakamura K., Tohri A., Ohta H., Inoue I., and Shen J.-R. Distribution of the extrinsic proteins as a potential marker for the evolution of photosynthetic oxygen-evolving photosystem II. FEBS J. 272 (2005) 5020-5030
18. Kilian O., and Kroth P.G. Presequence acquisition during secondary endocytobiosis and the possible role of introns. J. Mol. Evol. 58 (2004) 712-721
19. Chaal B.K., and Green B.R. Protein import pathways in 'complex' chloroplast derived from secondary endosymbiosis involving a red algal ancestor. Plant Mol. Biol. 57 (2005) 333-342
20. Kilian O., and Kroth P.G. Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids. Plant J. 41 (2005) 175-183
21. Enami I., Satoh K., and Katoh S. Crosslinking between the 33 kDa extrinsic protein and the 47 kDa chlorophyll-carrying protein of the PSII reaction center core complex. FEBS Lett. 226 (1987) 161-165
22. Bricker T.M., Odom W.R., and Queirolo C.B. Close association of the 33 kDa extrinsic protein with the apoprotein of CPa1 in photosystem II. FEBS Lett. 231 (1988) 111-117
23. Enami I., Miyaoka T., Mochizuki Y., Shen J.-R., Satoh K., and Katoh S. Nearest neighbor relationships among constituent proteins of oxygen-evolving photosystem II membranes: binding and function of the 33 kDa protein. Biochim. Biophys. Acta 973 (1989) 35-40
24. Enami I., Kaneko M., Kitamura N., Koike H., Sonoike K., Inoue Y., and Katoh S. Total immobilization of the extrinsic 33 kDa protein in spinach photosystem II membrane preparations. Protein stoichiometry and stabilization of oxygen evolution. Biochim. Biophys. Acta 1060 (1991) 224-232
25. 2+. Biochim. Biophys. Acta 1185 (1994) 75-80
26. Jeanmougin F., Thompson J.D., Gouy M., Higgins D.G., and Gibson T.J. Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23 (1998) 403-405
27. Nielsen H., Engelbrecht J., Brunak S., and von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10 (1997) 1-6
28. Emanuelsson O., Nielsen H., and von Heijne G. ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci. 8 (1999) 978-984
29. Nakai K., and Horton P. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24 (1999) 34-35
30. Schägger H., and von Jagow G. Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 199 (1991) 223-231
31. Danielsson R., Suorsa M., Paakkarinen V., Albertsson P.-Å., Styring S., Aro E.-M., and Mamedov F. Dimeric and monomeric organization of photosystem II. Distribution of five distinct complexes in the different domains of the thylakoid membrane. J. Biol. Chem. 281 (2006) 14241-14249
32. Okumura A., Ohta H., Inoue Y., and Enami I. Identification of functional domains of the extrinsic 12 kDa protein in red algal PSII by limited proteolysis and directed mutagenesis. Plant Cell Physiol. 42 (2001) 1331-1337
33. Keegstra K., Olsen L.J., and Theg S.M. Chloroplastic precursors and their transport across the envelope membranes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 40 (1989) 471-501
34. Ito M., Matsuo Y., and Nishikawa K. Prediction of protein secondary structure using the 3D-1D compatibility algorithm. Comput. Appl. Biosci. 13 (1997) 415-424
35. Jarvis P., and Robinson C. Mechanisms of protein import and routing in chloroplasts. Curr. Biol. 14 (2004) R1064-R1077