Dimer of 2,7-diamino-1,8-naphthyridine for the detection of mismatches formed by pyrimidine nucleotide bases

Bioorganic and Medicinal Chemistry

Volumn 16, Issue 24, 2008, Pages 10338-10344

  Kobori, Akio ^a   Nakatani, Kazuhiko ^b  

^a KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

Mismatched base pair; Naphthyridine; SPR

Indexed keywords

DIAMINONAPHTHYRIDINE DIMER; DIMER; DOUBLE STRANDED DNA; LIGAND; NAPHTHYRIDINE DERIVATIVE; PYRIMIDINE NUCLEOTIDE; UNCLASSIFIED DRUG;

ARTICLE; BASE MISPAIRING; DNA SEQUENCE; LIGAND BINDING; SINGLE NUCLEOTIDE POLYMORPHISM; SURFACE PLASMON RESONANCE; SYNTHESIS;

BASE PAIR MISMATCH; BASE SEQUENCE; DIMERIZATION; DNA; NAPHTHYRIDINES; PYRIMIDINE NUCLEOTIDES; SURFACE PLASMON RESONANCE;

EID: 56349167069     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmc.2008.10.035     Document Type: Article

References (52)

1. Collins E., Green E.D., Guttmacher A.E., and Guyer M.S. Nature 422 (2003) 835
2. Evans W.E., and Relling M.V. Nature 429 (2004) 464
3. Kruglyak L., and Nickerson D.A. Nat. Genet. 27 (2001) 234
4. Hirschhorn J.N., and Daly M.J. Nat. Rev. Genet. 6 (2005) 95
5. Syvänen A.-C. Nat. Rev. Genet. 2 (2001) 930
6. Nakatani K. Chembiochem 12 (2004) 1623
7. Metzker M.L. Genome Res. 15 (2005) 1767
8. Nyrén P., and Lundin A. Anal. Biochem. 151 (1985) 504
9. Ronaghi M., Uhlén M., and Nyrén P. Science 281 (1998) 363
10. Tyagi S., and Kramer F.R. Nat. Biotechnol. 14 (1996) 303
11. Howell W.M., Jobs M., Gyllensten U., and Brookes A.J. Nat. Biotechnol. 17 (1999) 87
12. Hacia J.G. Nat. Genet. 21 (1999) 42
13. Whitcombe D., Theaker J., Guy S.P., Brow T., and Little S. Nat. Biotechnol. 17 (1999) 804
14. Yamane A. Nucleic Acids Res. 30 (2002) e97
15. Hwang G.T., Seo Y.J., and Kim B.H. J. Am. Chem. Soc. 126 (2004) 6528
16. Seo Y.J., Ryu J.H., and Kim B.H. Org. Lett. 7 (2005) 4931
17. Yamana K., Fukunaga Y., Ohtani Y., Sato S., Nakamura M., Kim W.J., Akaike T., and Maruyama A. Chem. Commun. (2005) 2509
18. Kchler O., Jarikote D.V., and Seitz O. ChemBioChem 6 (2005) 69
19. Silverman A.P., and Kool E.T. Nucleic Acids Res. 33 (2005) 4978
20. Valis L., Amann N., and Wagenknecht H.-A. Org. Biomol. Chem. 3 (2005) 36
21. Bethge L., Jarikote D.V., and Seitz O. J. Med. Chem. 16 (2008) 114
22. Lukhtanov E.A., Lokhov S.G., Gorn V.V., Podyminogin M.A., and Mahoney W. Nucleic Acids Res. 35 (2007) e30
23. Tainaka K., Tanaka K., Ikeda S., Nishiza K., Unzai T., Fujiwara Y., Saito I., and Okamoto A. J. Am. Chem. Soc. 129 (2007) 4776
24. Okamoto A., Kanatani K., and Saito I. J. Am. Chem. Soc. 126 (2004) 4820
25. Okamoto A., Saito Y., and Saito I. J. Photochem. Photobiol. C 6 (2005) 108
26. Litos I.K., Ioannou P.C., Christopoulous T.K., Traeger-Synodinos J., and Kanavakis E. Anal. Chem. 79 (2007) 395
27. Pastinen T., Kurg A., Metspalu A., Peltonen L., and Syvanen A.C. Genome Res. 7 (1997) 606
28. Newton C.R., Graham A., Heptinstall L.E., Powell S.J., Summers C., Kalsheker N., Smith C J., and Markham A.F. Nucleic Acids Res. 17 (1989) 2503
29. Gibbs R.A., Nguyen P.N., and Caskey C.T. Nucleic Acids Res. 17 (1989) 2437
30. Germer S., Holland M.J., and Higuchi R. Genome Res. 10 (2000) 258
31. Wu D.Y., Ugozzoli L., Pal B.K., and Wallace R.B. Proc. Natl. Acad. Sci. USA 86 (1989) 2757
32. Shively L., Chang L., LeBon J.M., Liu Q., Riggs A.D., and Singer-Sam J. Biotechniques 34 (2003) 498
33. Guo Z., Liu Q.H., and Smith L.M. Nat. Biotechnol. 15 (1997) 331
34. Jackson B.A., and Barton J.K. J. Am. Chem. Soc. 119 (1997) 12986
35. Jackson B.A., Alekseyev V.Y., and Barton J.K. Biochemistry 38 (1999) 4655
36. Lacy E.R., Cox K.K., Wilson W.D., and Lee M. Nucleic Acids Res. 30 (2002) 1834
37. Nakatani K., Sando S., and Saito I. Nat. Biotechnol. 19 (2001) 51
38. Nakatani K., Sando S., Kumasawa H., Kikuchi J., and Saito I. J. Am. Chem. Soc. 123 (2001) 12650
39. Nakatani K., Kobori A., Kumasawa H., and Saito I. Bioorg. Med. Chem. Lett. 14 (2004) 1105
40. Peng T., Murase T., Goto Y., Kobori A., and Nakatani K. Bioorg. Med. Chem. Lett. 15 (2005) 259
41. Hagihara S., Kumasawa H., Goto Y., Hayashi G., Kobori A., Saito I., and Nakatani K. Nucleic Acids Res. 32 (2004) 278
42. Nakatani K., Hagihara S., Sando S., Sakamoto S., Yamaguchi K., Maesawa C., and Saito I. J. Am. Chem. Soc. 125 (2003) 662
43. Myers R.M., Larin Z., and Maniatis T. Science 230 (1985) 1242
44. Fazakerley G.V., Qignard E., Woisard A., Guschlbauer W., van der Marel G.A., van Boom J.H., Jones M., and Radman M. EMBO. J. 5 (1986) 3697-3703
45. Beijer F.H., Kooijman H., Spek A.L., Sijbesma R.P., and Meijer E.W. Angew. Chem. Int. Ed. 37 (1987) 75
46. Kobori A., Horie S., Suda H., Saito I., and Nakatani K. J. Am. Chem. Soc. 126 (2004) 557
47. Suda H., Kobori A., Zhang J., Hayashi G., and Nakatani K. Bioorg. Med. Chem. 13 (2005) 4507
48. Park T., Mayer M.F., Nakashima S., and Zimmerman S.C. Synlett 9 (2005) 1435
49. Corbin P.S., Zimmerman S.C., Thiessen P.A., Hawryluk N.A., and Murray T.J. J. Am. Chem. Soc. 123 (2001) 10475
50. Pharmacia-Biosensor. 1990 Biacore User's Manual. Piscatway, NJ.
51. Löfås S., and Johnson B. J. Chem. Soc. Chem. Commun. 21 (1990) 1526
52. Stenberg M., and Nygren H.J. Theor. Biol. 113 (1985) 129