-
3
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis E.R. The impact of next-generation sequencing technology on genetics. Trends Genet. 24 (2008) 133-141
-
(2008)
Trends Genet.
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
4
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster S.C. Next-generation sequencing transforms today's biology. Nat. Methods 5 (2008) 16-18
-
(2008)
Nat. Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
5
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker M.L. Emerging technologies in DNA sequencing. Genome Res. 15 (2005) 1767-1776
-
(2005)
Genome Res.
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
6
-
-
33751414735
-
Sequencing single molecules of DNA
-
Bayley H. Sequencing single molecules of DNA. Curr. Opin. Chem. Biol. 10 (2006) 628-637
-
(2006)
Curr. Opin. Chem. Biol.
, vol.10
, pp. 628-637
-
-
Bayley, H.1
-
7
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437 (2005) 376-380
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
-
8
-
-
33644857153
-
BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies
-
Fedurco M., Romieu A., Williams S., Lawrence I., and Turcatti G. BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies. Nucleic Acids Res. 34 (2006) e22
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Fedurco, M.1
Romieu, A.2
Williams, S.3
Lawrence, I.4
Turcatti, G.5
-
9
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson D.S., Mortazavi A., Myers R.M., and Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 316 (2007) 1497-1502
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
10
-
-
40249111689
-
A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis
-
Turcatti G., Romieu A., Fedurco M., and Tairi A.-P. A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis. Nucleic Acids Res. 36 (2008) e25
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Turcatti, G.1
Romieu, A.2
Fedurco, M.3
Tairi, A.-P.4
-
11
-
-
41749104588
-
Single-molecule DNA sequencing of a viral genome
-
Harris T.D., Buzby P.R., Babcock H., Beer E., Bowers J., Braslavsky I., et al. Single-molecule DNA sequencing of a viral genome. Science 320 (2008) 106-109
-
(2008)
Science
, vol.320
, pp. 106-109
-
-
Harris, T.D.1
Buzby, P.R.2
Babcock, H.3
Beer, E.4
Bowers, J.5
Braslavsky, I.6
-
12
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure J., Porreca G.J., Reppas N.B., Lin X., McCutcheon J.P., Rosenbaum A.M., et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309 (2005) 1728-1732
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
Porreca, G.J.2
Reppas, N.B.3
Lin, X.4
McCutcheon, J.P.5
Rosenbaum, A.M.6
-
13
-
-
34250201129
-
Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy
-
Kim J.B., Porreca G.J., Song L., Greenway S.C., Gorham J.M., Church G.M., et al. Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. Science 316 (2007) 1481-1484
-
(2007)
Science
, vol.316
, pp. 1481-1484
-
-
Kim, J.B.1
Porreca, G.J.2
Song, L.3
Greenway, S.C.4
Gorham, J.M.5
Church, G.M.6
-
14
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan N., Forrest A.R., Kolle G., Gardiner B.B., Faulkner G.J., Brown M.K., et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5 (2008) 613-619
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.2
Kolle, G.3
Gardiner, B.B.4
Faulkner, G.J.5
Brown, M.K.6
-
15
-
-
48249132489
-
Four-color DNA sequencing with 3′ O -modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides
-
Guo J., Xu N., Li Z., Zhang S., Wu J., Kim D.H., et al. Four-color DNA sequencing with 3′ O -modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides. Proc. Natl. Acad. Sci. USA 105 (2008) 9145-9150
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9145-9150
-
-
Guo, J.1
Xu, N.2
Li, Z.3
Zhang, S.4
Wu, J.5
Kim, D.H.6
-
16
-
-
44949114259
-
Rapid genome sequencing with short universal tiling probes
-
Pihlak A., Bauren G., Hersoug E., Lonnerberg P., Metsis A., and Linnarsson S. Rapid genome sequencing with short universal tiling probes. Nat. Biotechnol. 26 (2008) 676-684
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 676-684
-
-
Pihlak, A.1
Bauren, G.2
Hersoug, E.3
Lonnerberg, P.4
Metsis, A.5
Linnarsson, S.6
-
17
-
-
38349115136
-
Microarray-based DNA resequencing using 3′ blocked primers
-
Sram J., Sommer S.S., and Liu Q. Microarray-based DNA resequencing using 3′ blocked primers. Anal. Biochem. 374 (2008) 41-47
-
(2008)
Anal. Biochem.
, vol.374
, pp. 41-47
-
-
Sram, J.1
Sommer, S.S.2
Liu, Q.3
-
18
-
-
44849092474
-
The new paradigm of flow cell sequencing
-
Holt R.A., and Jones S.J.M. The new paradigm of flow cell sequencing. Genome Res. 18 (2008) 839-846
-
(2008)
Genome Res.
, vol.18
, pp. 839-846
-
-
Holt, R.A.1
Jones, S.J.M.2
-
19
-
-
0003803285
-
-
University Science Books, Sausalito, CA
-
Bloomfield V.A., Crothers D.M., and Tinoco Jr. I. Nucleic Acids, Structures, Properties and Functions (2000), University Science Books, Sausalito, CA
-
(2000)
Nucleic Acids, Structures, Properties and Functions
-
-
Bloomfield, V.A.1
Crothers, D.M.2
Tinoco Jr., I.3
-
20
-
-
0032758666
-
Application of a thermodynamic nearest-neighbor model to estimate nucleic acid stability and optimize probe design: prediction of melting points of multiple mutations of apolipoprotein B-3500 and factor V with a hybridization probe genotyping assay on the LightCycler
-
von Ahsen N., Oellerich M., Armstrong V.W., and Schutz E. Application of a thermodynamic nearest-neighbor model to estimate nucleic acid stability and optimize probe design: prediction of melting points of multiple mutations of apolipoprotein B-3500 and factor V with a hybridization probe genotyping assay on the LightCycler. Clin. Chem. 45 (1999) 2094-2101
-
(1999)
Clin. Chem.
, vol.45
, pp. 2094-2101
-
-
von Ahsen, N.1
Oellerich, M.2
Armstrong, V.W.3
Schutz, E.4
-
21
-
-
0037838867
-
The LightTyper: high-throughput genotyping using fluorescent melting curve analysis
-
1294-5.
-
Bennett C.D., Campbell M.N., Cook C.J., Eyre D.J., Nay L.M., Nielsen D.R., et al. The LightTyper: high-throughput genotyping using fluorescent melting curve analysis. Biotechniques 34 (2003) 1288-1292 1294-5.
-
(2003)
Biotechniques
, vol.34
, pp. 1288-1292
-
-
Bennett, C.D.1
Campbell, M.N.2
Cook, C.J.3
Eyre, D.J.4
Nay, L.M.5
Nielsen, D.R.6
-
22
-
-
0035559697
-
Mutation detection using fluorescent hybridization probes and melting curve analysis
-
Lyon E. Mutation detection using fluorescent hybridization probes and melting curve analysis. Expert. Rev. Mol. Diagn. 1 (2001) 92-101
-
(2001)
Expert. Rev. Mol. Diagn.
, vol.1
, pp. 92-101
-
-
Lyon, E.1
-
23
-
-
0000668407
-
Theory of the phase transition between helix and random coil in polypeptide chains
-
Zimm B.H., and Bragg J.K. Theory of the phase transition between helix and random coil in polypeptide chains. J. Chem. Phys. 31 (1959) 526-531
-
(1959)
J. Chem. Phys.
, vol.31
, pp. 526-531
-
-
Zimm, B.H.1
Bragg, J.K.2
-
26
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
SantaLucia Jr. J., Allawi H.T., and Seneviratne P.A. Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry 35 (1996) 3555-3562
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
SantaLucia Jr., J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
27
-
-
0029859713
-
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
-
Sugimoto N., Nakano S., Yoneyama M., and Honda K. Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes. Nucleic Acids Res. 24 (1996) 4501-4505
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4501-4505
-
-
Sugimoto, N.1
Nakano, S.2
Yoneyama, M.3
Honda, K.4
-
28
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 95 (1998) 1460-1465
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
29
-
-
3042735602
-
Prediction of hybridization and melting for double-stranded nucleic acids
-
Dimitrov R.A., and Zuker M. Prediction of hybridization and melting for double-stranded nucleic acids. Biophys. J. 87 (2004) 215-226
-
(2004)
Biophys. J.
, vol.87
, pp. 215-226
-
-
Dimitrov, R.A.1
Zuker, M.2
-
30
-
-
0024615295
-
Sequencing of megabase plus DNA by hybridization: theory of the method
-
Drmanac R., Labat I., Brukner I., and Crkvenjakov R. Sequencing of megabase plus DNA by hybridization: theory of the method. Genomics 4 (1989) 114-128
-
(1989)
Genomics
, vol.4
, pp. 114-128
-
-
Drmanac, R.1
Labat, I.2
Brukner, I.3
Crkvenjakov, R.4
-
31
-
-
0025836794
-
DNA sequencing by hybridization: 100 bases read by a non-gel-based method
-
Strezoska Z., Paunesku T., Radosavljevic D., Labat I., Drmanac R., and Crkvenjakov R. DNA sequencing by hybridization: 100 bases read by a non-gel-based method. Proc. Natl. Acad. Sci. USA 88 (1991) 10089-10093
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 10089-10093
-
-
Strezoska, Z.1
Paunesku, T.2
Radosavljevic, D.3
Labat, I.4
Drmanac, R.5
Crkvenjakov, R.6
-
32
-
-
0027182063
-
DNA-sequence determination by hybridization-a strategy for efficient large-scale sequencing
-
Drmanac R., Drmanac S., Strezoska Z., Paunesku T., Labat I., Zeremski M., et al. DNA-sequence determination by hybridization-a strategy for efficient large-scale sequencing. Science 260 (1993) 1649-1653
-
(1993)
Science
, vol.260
, pp. 1649-1653
-
-
Drmanac, R.1
Drmanac, S.2
Strezoska, Z.3
Paunesku, T.4
Labat, I.5
Zeremski, M.6
-
33
-
-
10244219858
-
Accessing genetic information with high-density DNA arrays
-
Chee M., Yang R., Hubbell E., Berno A., Huang X.C., Stern D., et al. Accessing genetic information with high-density DNA arrays. Science 274 (1996) 610-614
-
(1996)
Science
, vol.274
, pp. 610-614
-
-
Chee, M.1
Yang, R.2
Hubbell, E.3
Berno, A.4
Huang, X.C.5
Stern, D.6
-
34
-
-
0031984126
-
Accurate sequencing by hybridization for DNA diagnostics and individual genomics
-
Drmanac S., Kita D., Labat I., Hauser B., Schmidt C., Burczak J.D., et al. Accurate sequencing by hybridization for DNA diagnostics and individual genomics. Nat. Biotechnol. 16 (1998) 54-58
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 54-58
-
-
Drmanac, S.1
Kita, D.2
Labat, I.3
Hauser, B.4
Schmidt, C.5
Burczak, J.D.6
-
35
-
-
0035941029
-
Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21
-
Patil N., Berno A.J., Hinds D.A., Barrett W.A., Doshi J.M., Hacker C.R., et al. Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science 294 (2001) 1719-1723
-
(2001)
Science
, vol.294
, pp. 1719-1723
-
-
Patil, N.1
Berno, A.J.2
Hinds, D.A.3
Barrett, W.A.4
Doshi, J.M.5
Hacker, C.R.6
-
36
-
-
0036051511
-
Sequencing by hybridization (SBH): advantages, achievements, and opportunities
-
Drmanac R., Drmanac S., Chui G., Diaz R., Hou A., Jin H., et al. Sequencing by hybridization (SBH): advantages, achievements, and opportunities. Adv. Biochem. Eng. Biotechnol. 77 (2002) 75-101
-
(2002)
Adv. Biochem. Eng. Biotechnol.
, vol.77
, pp. 75-101
-
-
Drmanac, R.1
Drmanac, S.2
Chui, G.3
Diaz, R.4
Hou, A.5
Jin, H.6
-
37
-
-
0345598908
-
Thermodynamic treatment of oligonucleotide duplex-simplex equilibria
-
Owczarzy R., Dunietz I., Behlke M.A., Klotz I.M., and Walder J.A. Thermodynamic treatment of oligonucleotide duplex-simplex equilibria. Proc. Natl. Acad. Sci. USA 100 (2003) 14840-14845
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14840-14845
-
-
Owczarzy, R.1
Dunietz, I.2
Behlke, M.A.3
Klotz, I.M.4
Walder, J.A.5
-
38
-
-
15944415071
-
Comparison of different melting temperature calculation methods for short DNA sequences
-
Panjkovich A., and Melo F. Comparison of different melting temperature calculation methods for short DNA sequences. Bioinformatics 21 (2005) 711-722
-
(2005)
Bioinformatics
, vol.21
, pp. 711-722
-
-
Panjkovich, A.1
Melo, F.2
-
39
-
-
0029655189
-
A novel thermostable polymerase for DNA sequencing
-
Reeve M.A., and Fuller C.W. A novel thermostable polymerase for DNA sequencing. Nature 376 (1995) 796-797
-
(1995)
Nature
, vol.376
, pp. 796-797
-
-
Reeve, M.A.1
Fuller, C.W.2
-
41
-
-
0032990627
-
Uniform band intensities in fluorescent dye terminator sequencing
-
Kumar S., Fuller C.W., Nampalli S., Khot M., Livshin I., Sun L., et al. Uniform band intensities in fluorescent dye terminator sequencing. Nucleosides Nucleotides 18 (1999) 1101-1103
-
(1999)
Nucleosides Nucleotides
, vol.18
, pp. 1101-1103
-
-
Kumar, S.1
Fuller, C.W.2
Nampalli, S.3
Khot, M.4
Livshin, I.5
Sun, L.6
-
43
-
-
41449112763
-
Magnetic assembly of high-density DNA arrays for genomic analyses
-
Barbee K.D., and Huang X. Magnetic assembly of high-density DNA arrays for genomic analyses. Anal. Chem. 80 (2008) 2149-2154
-
(2008)
Anal. Chem.
, vol.80
, pp. 2149-2154
-
-
Barbee, K.D.1
Huang, X.2
-
44
-
-
0344210429
-
Photocleavable peptide-DNA conjugates: synthesis and applications to DNA analysis using MALDI-MS
-
Olejnik J., Ludemann H.C., Krzymanska-Olejnik E., Berkenkamp S., Hillenkamp F., and Rothschild K.J. Photocleavable peptide-DNA conjugates: synthesis and applications to DNA analysis using MALDI-MS. Nucleic Acids Res. 27 (1999) 4626-4631
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4626-4631
-
-
Olejnik, J.1
Ludemann, H.C.2
Krzymanska-Olejnik, E.3
Berkenkamp, S.4
Hillenkamp, F.5
Rothschild, K.J.6
-
45
-
-
21644474479
-
Genotyping SNPs using a UV-photocleavable oligonucleotide in MALDI-TOF MS
-
Vallone P.M., Fahr K., and Kostrzewa M. Genotyping SNPs using a UV-photocleavable oligonucleotide in MALDI-TOF MS. Methods Mol. Biol. 297 (2005) 169-178
-
(2005)
Methods Mol. Biol.
, vol.297
, pp. 169-178
-
-
Vallone, P.M.1
Fahr, K.2
Kostrzewa, M.3
|