메뉴 건너뛰기




Volumn 180, Issue 1, 2008, Pages 17-25

The rate and character of spontaneous mutation in Thermus thermophilus

Author keywords

[No Author keywords available]

Indexed keywords

OROTIDINE 5' PHOSPHATE DECARBOXYLASE; PHOSPHORIBOSYLTRANSFERASE;

EID: 56049105885     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.089086     Document Type: Article
Times cited : (18)

References (40)
  • 2
    • 3543028588 scopus 로고    scopus 로고
    • Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication
    • BOUDSOCQ, F., R. J. KOKOSKA, B. S. PLOSKY, A. VAISMAN, H. LING et al., 2004 Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication. J. Biol. Chem. 279: 32932-32940.
    • (2004) J. Biol. Chem , vol.279 , pp. 32932-32940
    • BOUDSOCQ, F.1    KOKOSKA, R.J.2    PLOSKY, B.S.3    VAISMAN, A.4    LING, H.5
  • 4
    • 33745991943 scopus 로고    scopus 로고
    • Comparative genomics of Thermus thermophilus: Plasticity of the megaplasmid and its contribution to a thermophilic lifestyle
    • BRÜGGEMANN, H., and C. CHEN, 2006 Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle. J. Biotechnol. 124: 654-661.
    • (2006) J. Biotechnol , vol.124 , pp. 654-661
    • BRÜGGEMANN, H.1    CHEN, C.2
  • 5
    • 0037134533 scopus 로고    scopus 로고
    • DNA polymerase III holoenzyme from Thermus thermophilus. Identification, expression, purification of components, and use to reconstitute a processive replicase
    • BULLARD, J. M., J. C. WILLIAMS, W. K. ACKER, C. JACOBI, N. JANJIC et al., 2002 DNA polymerase III holoenzyme from Thermus thermophilus. Identification, expression, purification of components, and use to reconstitute a processive replicase. J. Biol. Chem. 277: 13401-13408.
    • (2002) J. Biol. Chem , vol.277 , pp. 13401-13408
    • BULLARD, J.M.1    WILLIAMS, J.C.2    ACKER, W.K.3    JACOBI, C.4    JANJIC, N.5
  • 6
    • 0043062622 scopus 로고    scopus 로고
    • Temperature-dependent hypermutational phenotype in recA mutants of Thermus thermophilus HB27
    • CASTÁN, P., L. CASARES, J. BARBÉ and J. BERENGUER, 2003 Temperature-dependent hypermutational phenotype in recA mutants of Thermus thermophilus HB27. J. Bacteriol. 185: 4901-4907.
    • (2003) J. Bacteriol , vol.185 , pp. 4901-4907
    • CASTÁN, P.1    CASARES, L.2    BARBÉ, J.3    BERENGUER, J.4
  • 7
    • 21844477811 scopus 로고    scopus 로고
    • The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota
    • CHEN, L., K. BRUGGER, M. SKOVGAARD, P. REDDER, Q. SHE et al., 2005 The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J. Bacteriol. 187: 4992-4999.
    • (2005) J. Bacteriol , vol.187 , pp. 4992-4999
    • CHEN, L.1    BRUGGER, K.2    SKOVGAARD, M.3    REDDER, P.4    SHE, Q.5
  • 8
    • 28144449309 scopus 로고    scopus 로고
    • Deinococcus radiodurans: The consummate survivor
    • COX, M. M., and J. R. BATTISTA, 2005 Deinococcus radiodurans: the consummate survivor. Nat. Rev. Microbiol. 3: 882-892.
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 882-892
    • COX, M.M.1    BATTISTA, J.R.2
  • 9
    • 22144499619 scopus 로고    scopus 로고
    • On the mutation rate of herpes simplex virus type 1
    • DRAKE, J. W., and C. B. C. HWANG, 2005 On the mutation rate of herpes simplex virus type 1. Genetics 170: 969-970.
    • (2005) Genetics , vol.170 , pp. 969-970
    • DRAKE, J.W.1    HWANG, C.B.C.2
  • 11
    • 0344690109 scopus 로고    scopus 로고
    • Identification, cloning and expression of p25, an AT-rich DNA-binding protein from the extreme thermophile, Thermus aquaticus YT-1
    • DU, X., and J. J. PÈNE, 1999 Identification, cloning and expression of p25, an AT-rich DNA-binding protein from the extreme thermophile, Thermus aquaticus YT-1. Nucleic Acids Res. 27: 1690-1697.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1690-1697
    • DU, X.1    PÈNE, J.J.2
  • 12
    • 0036574857 scopus 로고    scopus 로고
    • A hot story from comparative genomics: Reverse gyrase is the only hyperthermophile-specific protein
    • FORTERRE, P., 2002 A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein. Trends Genet. 18: 236-237.
    • (2002) Trends Genet , vol.18 , pp. 236-237
    • FORTERRE, P.1
  • 13
    • 0242268026 scopus 로고    scopus 로고
    • Fission yeast Uve1 and Apn2 function in distinct oxidative damage repair pathways in vivo
    • FRASER, J. L. A., E. NEILL and S. DAVEY, 2003 Fission yeast Uve1 and Apn2 function in distinct oxidative damage repair pathways in vivo. DNA Repair 2: 1253-1267.
    • (2003) DNA Repair , vol.2 , pp. 1253-1267
    • FRASER, J.L.A.1    NEILL, E.2    DAVEY, S.3
  • 14
    • 3843150551 scopus 로고    scopus 로고
    • Genomewide patterns of nucleotide substitution reveal stringent functional constraints on the protein sequences of thermophiles
    • FRIEDMAN, R., J. W. DRAKE and A. L. HUGHES, 2004 Genomewide patterns of nucleotide substitution reveal stringent functional constraints on the protein sequences of thermophiles. Genetics 167: 1507-1512.
    • (2004) Genetics , vol.167 , pp. 1507-1512
    • FRIEDMAN, R.1    DRAKE, J.W.2    HUGHES, A.L.3
  • 15
    • 33646490558 scopus 로고    scopus 로고
    • Mechanism of a genetic glissando: Structural biology of indel mutations
    • GARCIA-DIAZ, M., and T. A. KUNKEL, 2006 Mechanism of a genetic glissando: structural biology of indel mutations. Trends Biochem. Sci. 31: 206-214.
    • (2006) Trends Biochem. Sci , vol.31 , pp. 206-214
    • GARCIA-DIAZ, M.1    KUNKEL, T.A.2
  • 16
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA polymerases in prokaryotes and eukaryotes
    • GOODMAN, M. F., 2002 Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71: 17-50.
    • (2002) Annu. Rev. Biochem , vol.71 , pp. 17-50
    • GOODMAN, M.F.1
  • 17
    • 0036893213 scopus 로고    scopus 로고
    • Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae
    • GRAGG, H., B. D. HARFE and S. JINKS- ROBERTSON, 2002 Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae. Mol. Cell. Biol. 22: 8756-8762.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 8756-8762
    • GRAGG, H.1    HARFE, B.D.2    JINKS- ROBERTSON, S.3
  • 18
    • 1942467443 scopus 로고    scopus 로고
    • Stability and repair of DNA in hyperthermophilic Archaea
    • GROGAN, D. W., 2004 Stability and repair of DNA in hyperthermophilic Archaea. Curr. Issues Mol. Biol. 6: 137-144.
    • (2004) Curr. Issues Mol. Biol , vol.6 , pp. 137-144
    • GROGAN, D.W.1
  • 19
    • 0037315131 scopus 로고    scopus 로고
    • Molecular characteristics of spontaneous deletions in the hyperthermophilic archaeon Sulfolobus acidocaldarius
    • GROGAN, D. W., and J. E. HANSEN, 2003 Molecular characteristics of spontaneous deletions in the hyperthermophilic archaeon Sulfolobus acidocaldarius. J. Bacteriol. 185: 1266-1272.
    • (2003) J. Bacteriol , vol.185 , pp. 1266-1272
    • GROGAN, D.W.1    HANSEN, J.E.2
  • 20
    • 0034940811 scopus 로고    scopus 로고
    • Genetic fidelity under harsh conditions: Analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius
    • GROGAN, D. W., G. T. CARVER and J. W. DRAKE, 2001 Genetic fidelity under harsh conditions: analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius. Proc. Natl. Acad. Sci. USA 98: 7928-7933.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 7928-7933
    • GROGAN, D.W.1    CARVER, G.T.2    DRAKE, J.W.3
  • 21
    • 2342586677 scopus 로고    scopus 로고
    • The genome sequence of the extreme thermophile Thermus thermophilus
    • HENNE, A., H. BRÜGGEMANN, C. RAASCH, A. WIEZER, T. HARTSCH et al., 2004 The genome sequence of the extreme thermophile Thermus thermophilus. Nat. Biotechnol. 22: 547-553.
    • (2004) Nat. Biotechnol , vol.22 , pp. 547-553
    • HENNE, A.1    BRÜGGEMANN, H.2    RAASCH, C.3    WIEZER, A.4    HARTSCH, T.5
  • 22
    • 0035980098 scopus 로고    scopus 로고
    • KAWARABAYASI, Y., Y. HINO, H. HORIKAWA, K. JIN-NO, M. TAKAHASHI et al., 2001 Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.DNA Res. 8: 123-140.
    • KAWARABAYASI, Y., Y. HINO, H. HORIKAWA, K. JIN-NO, M. TAKAHASHI et al., 2001 Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.DNA Res. 8: 123-140.
  • 23
    • 0019972442 scopus 로고
    • Mutation and growth rates from Luria-Delbrück fluctuation tests
    • KOCH, A. L., 1982 Mutation and growth rates from Luria-Delbrück fluctuation tests. Mutat. Res. 95: 129-143.
    • (1982) Mutat. Res , vol.95 , pp. 129-143
    • KOCH, A.L.1
  • 24
    • 0029929717 scopus 로고    scopus 로고
    • Archaebacterial DNA polymerases tightly bind uracil-containing DNA
    • LASKEN, R. S., D. M. SCHUSTER and A. RASHTCHIAN, 1996 Archaebacterial DNA polymerases tightly bind uracil-containing DNA. J. Biol. Chem. 271: 17692-17696.
    • (1996) J. Biol. Chem , vol.271 , pp. 17692-17696
    • LASKEN, R.S.1    SCHUSTER, D.M.2    RASHTCHIAN, A.3
  • 25
    • 2342468069 scopus 로고    scopus 로고
    • Three replication origins in Sulfolobus spp.: Synchronous initiation of replication and asynchronous termination
    • LUNDGREN, M., L. CHEN, A. ANDERSSON, P. NILSSON and R. BERNANDER, 2003 Three replication origins in Sulfolobus spp.: Synchronous initiation of replication and asynchronous termination. Proc. Natl. Acad. Sci. USA 101: 7046-7051.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7046-7051
    • LUNDGREN, M.1    CHEN, L.2    ANDERSSON, A.3    NILSSON, P.4    BERNANDER, R.5
  • 26
    • 0024203273 scopus 로고    scopus 로고
    • The base-alteration spectrum of spontaneous and ultraviolet-induced forward mutations in the URA3 locus of Saccharomyces cerevisiae
    • LEE, G. S., E. A. SAVAGE, R. G. RITZEL and R. C. VON BORSTEL, 1998 The base-alteration spectrum of spontaneous and ultraviolet-induced forward mutations in the URA3 locus of Saccharomyces cerevisiae. Mol. Gen. Genet. 214: 396-404.
    • (1998) Mol. Gen. Genet , vol.214 , pp. 396-404
    • LEE, G.S.1    SAVAGE, E.A.2    RITZEL, R.G.3    VON BORSTEL, R.C.4
  • 27
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • LURIA, S. E., and M. DELBRÜCK, 1943 Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28: 491-511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • LURIA, S.E.1    DELBRÜCK, M.2
  • 28
    • 34547812316 scopus 로고    scopus 로고
    • An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii
    • MACKWAN, R. R., G. T. CARVER, J. W. DRAKE and D. W. GROGAN, 2007 An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii. Genetics 176: 697-701.
    • (2007) Genetics , vol.176 , pp. 697-701
    • MACKWAN, R.R.1    CARVER, G.T.2    DRAKE, J.W.3    GROGAN, D.W.4
  • 29
    • 0001385979 scopus 로고
    • A note on estimating the variance of the sample median
    • MARITZ, J. S., and R. G. JARRETT, 1978 A note on estimating the variance of the sample median. J. Am. Stat. Assoc. 73: 194-196.
    • (1978) J. Am. Stat. Assoc , vol.73 , pp. 194-196
    • MARITZ, J.S.1    JARRETT, R.G.2
  • 30
    • 0015952435 scopus 로고
    • Physiochemical properties of deoxyribonucleic acid from an extreme thermophile
    • OSHIMA, T., and K. IMAHORI, 1974 Physiochemical properties of deoxyribonucleic acid from an extreme thermophile. J. Biochem. 75: 179-183.
    • (1974) J. Biochem , vol.75 , pp. 179-183
    • OSHIMA, T.1    IMAHORI, K.2
  • 31
    • 33745004429 scopus 로고    scopus 로고
    • Mutations and rearrangements in the genome of Sulfolobus solfataricus P2
    • REDDER, P., andR. A. GARRETT, 2006 Mutations and rearrangements in the genome of Sulfolobus solfataricus P2. J. Bacteriol. 188: 4198-4206.
    • (2006) J. Bacteriol , vol.188 , pp. 4198-4206
    • REDDER, P.1    andR2    GARRETT, A.3
  • 32
    • 0037133363 scopus 로고    scopus 로고
    • Biological effects of DNA damage in the hyperthermophilic archaeon Sulfolobus acidocaldarius
    • REILLY, M. S., and D. W. GROGAN, 2002 Biological effects of DNA damage in the hyperthermophilic archaeon Sulfolobus acidocaldarius. FEMS Microbiol. Lett. 208: 29-34.
    • (2002) FEMS Microbiol. Lett , vol.208 , pp. 29-34
    • REILLY, M.S.1    GROGAN, D.W.2
  • 33
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • ROSCHE, W. A., and P. L. FOSTER, 2000 Determining mutation rates in bacterial populations. Methods 20: 4-17.
    • (2000) Methods , vol.20 , pp. 4-17
    • ROSCHE, W.A.1    FOSTER, P.L.2
  • 34
    • 0033601804 scopus 로고    scopus 로고
    • Stabilization of the intermediate in frameshift mutation
    • SAGHER, D., A. HSU and B. STRAUSS, 1999 Stabilization of the intermediate in frameshift mutation. Mutat. Res. 432: 73-77.
    • (1999) Mutat. Res , vol.432 , pp. 73-77
    • SAGHER, D.1    HSU, A.2    STRAUSS, B.3
  • 37
  • 38
    • 0021988148 scopus 로고
    • Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4
    • STREISINGER, G., and J. OWEN, 1985 Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4. Genetics 109: 633-659.
    • (1985) Genetics , vol.109 , pp. 633-659
    • STREISINGER, G.1    OWEN, J.2
  • 39
    • 0030001222 scopus 로고    scopus 로고
    • Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus
    • YAMAGISHI, A., T. TANIMOTO, T. SUZUKI and T. OSHIMA, 1996 Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus. Appl. Environ. Microbiol. 62: 2191-2194.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2191-2194
    • YAMAGISHI, A.1    TANIMOTO, T.2    SUZUKI, T.3    OSHIMA, T.4
  • 40
    • 0025015387 scopus 로고
    • The primary structure of DNA binding protein II from the extreme thermophilic bacterium Thermus thermophilus
    • ZIERER, R., and D. CHOLI, 1990 The primary structure of DNA binding protein II from the extreme thermophilic bacterium Thermus thermophilus. FEBS Lett. 273: 59-62.
    • (1990) FEBS Lett , vol.273 , pp. 59-62
    • ZIERER, R.1    CHOLI, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.