메뉴 건너뛰기




Volumn 15, Issue 5, 2008, Pages 297-308

Construction of signature-tagged mutant library in mesorhizobium loti as a powerful tool for functional genomics

Author keywords

Mesorhizobium loti; signature tagged mutagenesis; mutant library, reverse genetics

Indexed keywords

NITROGEN;

EID: 56049087533     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsn017     Document Type: Article
Times cited : (35)

References (42)
  • 1
    • 0034739881 scopus 로고    scopus 로고
    • Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
    • Kaneko, T., Nakamura, Y., Sato, S., et al. 2000, Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti, DNA Res., 7, 331-338.
    • (2000) DNA Res , vol.7 , pp. 331-338
    • Kaneko, T.1    Nakamura, Y.2    Sato, S.3
  • 2
    • 0036928484 scopus 로고    scopus 로고
    • Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
    • Kaneko, T., Nakamura, Y., Sato, S., et al. 2002, Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110, DNA Res., 9, 189-197.
    • (2002) DNA Res , vol.9 , pp. 189-197
    • Kaneko, T.1    Nakamura, Y.2    Sato, S.3
  • 3
    • 0035958746 scopus 로고    scopus 로고
    • The composite genome of the legume symbiont Sinorhizobium meliloti
    • Galibert, F., Finan, T. M., Long, S. R., et al. 2001, The composite genome of the legume symbiont Sinorhizobium meliloti, Science, 293, 668-672.
    • (2001) Science , vol.293 , pp. 668-672
    • Galibert, F.1    Finan, T.M.2    Long, S.R.3
  • 4
    • 33644861233 scopus 로고    scopus 로고
    • The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
    • González, Y., Santamaría, R. I., Bustos, P., et al. 2006, The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons, Proc. Natl. Acad. Sci. USA, 103, 3834-3839.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 3834-3839
    • González, Y.1    Santamaría, R.I.2    Bustos, P.3
  • 5
    • 33745094990 scopus 로고    scopus 로고
    • The genome of Rhizobium leguminosarum has recognizable core and accessory components
    • Young,J.P.,Crossman,L. C., Johnston, A. W., et al. 2006, The genome of Rhizobium leguminosarum has recognizable core and accessory components, Genome Biol., 7, R34.
    • (2006) Genome Biol , vol.7
    • Young, J.P.1    Crossman, L.C.2    Johnston, A.W.3
  • 6
    • 34249898934 scopus 로고    scopus 로고
    • Legumes symbioses: Absence of Nod genes in photosynthetic bradyrhizobia
    • Giraud, E., Moulin, L., Vallenet, D., Barbe, V., et al. 2007, Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia, Science, 316, 1307-1312.
    • (2007) Science , vol.316 , pp. 1307-1312
    • Giraud, E.1    Moulin, L.2    Vallenet, D.3    Barbe, V.4
  • 7
    • 0037313633 scopus 로고    scopus 로고
    • Development of Sinorhizobium meliloti pilot macroarrays for transcriptome analysis
    • Berges, H., Lauber, E., Liebe, C., et al. 2003, Development of Sinorhizobium meliloti pilot macroarrays for transcriptome analysis, Appl. Environ. Microbiol., 69, 1214-1219.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 1214-1219
    • Berges, H.1    Lauber, E.2    Liebe, C.3
  • 8
    • 0038586317 scopus 로고    scopus 로고
    • A global analysis of protein expression profiles in Sinorhizobium meliloti: Discovery of new genes for nodule occupancy and stress adaptation
    • Djordjevic, M. A., Chen, H. C., Natera, S., et al. 2003, A global analysis of protein expression profiles in Sinorhizobium meliloti: discovery of new genes for nodule occupancy and stress adaptation, Mol. Plant Microbe. Interact., 16, 508-524.
    • (2003) Mol. Plant Microbe. Interact , vol.16 , pp. 508-524
    • Djordjevic, M.A.1    Chen, H.C.2    Natera, S.3
  • 9
    • 9344251110 scopus 로고    scopus 로고
    • A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction
    • Barnett, M. J., Toman, C. J., Fisher, R. F. and Long, S. R. 2004, A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction, Proc. Natl. Acad. Sci. USA, 101, 16636-16641.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 16636-16641
    • Barnett, M.J.1    Toman, C.J.2    Fisher, R.F.3    Long, S.R.4
  • 10
    • 27744551607 scopus 로고    scopus 로고
    • Characterization of bacteroid proteins in soybean nodules formed with Bradyrhizobium japonicum USDA110
    • Hoa, L. T. P., Nomura, M. and Tajima, S. 2004, Characterization of bacteroid proteins in soybean nodules formed with Bradyrhizobium japonicum USDA110, Microbiol. Environ., 19, 71-75.
    • (2004) Microbiol. Environ , vol.19 , pp. 71-75
    • Hoa, L.T.P.1    Nomura, M.2    Tajima, S.3
  • 11
    • 11144357404 scopus 로고    scopus 로고
    • Expression islands clustered on symbiosis island of Mesorhizobium loti genome
    • Uchiumi, T., Ohwada, T., Itakura, M., et al. 2004, Expression islands clustered on symbiosis island of Mesorhizobium loti genome, J. Bacteriol., 45, 2439-2448.
    • (2004) J. Bacteriol , vol.45 , pp. 2439-2448
    • Uchiumi, T.1    Ohwada, T.2    Itakura, M.3
  • 12
    • 27744579098 scopus 로고    scopus 로고
    • Global protein expression pattern of Bradyrhizobium japonicum bacteroids: A prelude to functional proteomics
    • Sarma, A. D. and Emerich, D. W. 2005, Global protein expression pattern of Bradyrhizobium japonicum bacteroids: a prelude to functional proteomics, Proteomics, 5, 4170-4184.
    • (2005) Proteomics , vol.5 , pp. 4170-4184
    • Sarma, A.D.1    Emerich, D.W.2
  • 13
    • 48249105088 scopus 로고    scopus 로고
    • A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti
    • Shimoda, Y., Shinpo, S., Kohara, M., Nakamura, Y., Tabata, S. and Sato, S. 2008, A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti, DNA Res., 15, 13-23.
    • (2008) DNA Res , vol.15 , pp. 13-23
    • Shimoda, Y.1    Shinpo, S.2    Kohara, M.3    Nakamura, Y.4    Tabata, S.5    Sato, S.6
  • 14
    • 0032764518 scopus 로고    scopus 로고
    • Global transposon mutagenesis and a minimal mycoplasma genome
    • Hutchison, C. A., Peterson, S. N., Gill, S. R., et al. 1999, Global transposon mutagenesis and a minimal mycoplasma genome, Science, 286, 2165-2169.
    • (1999) Science , vol.286 , pp. 2165-2169
    • Hutchison, C.A.1    Peterson, S.N.2    Gill, S.R.3
  • 16
    • 3242800469 scopus 로고    scopus 로고
    • Systematic mutagenesis of the Escherichia coli genome
    • Kang, Y., Durfee, T., Glasner, J. D., et al. 2004, Systematic mutagenesis of the Escherichia coli genome, J. Bacteriol., 186, 4921-4930.
    • (2004) J. Bacteriol , vol.186 , pp. 4921-4930
    • Kang, Y.1    Durfee, T.2    Glasner, J.D.3
  • 17
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
    • Baba, T., Ara, T., Hasegawa, M., et al. 2006, Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection, Mol. Syst. Biol., 2, 0008.
    • (2006) Mol. Syst. Biol , vol.2 , pp. 0008
    • Baba, T.1    Ara, T.2    Hasegawa, M.3
  • 19
    • 25144476360 scopus 로고    scopus 로고
    • Signature-tagged mutagenesis: Technical advances in a negative selection method for virulence gene identification
    • Saenz, H. L. and Dehio, C. 2005, Signature-tagged mutagenesis: technical advances in a negative selection method for virulence gene identification, Curr. Opin. Microbiol., 8, 612-619.
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 612-619
    • Saenz, H.L.1    Dehio, C.2
  • 20
    • 33745122953 scopus 로고    scopus 로고
    • Construction of a large signature-tagged Mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti
    • Pobigaylo, N., Wetter, D., Szymczak, S., et al. 2006, Construction of a large signature-tagged Mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti, Appl. Environ. Microbiol., 72, 4329-4337.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 4329-4337
    • Pobigaylo, N.1    Wetter, D.2    Szymczak, S.3
  • 21
    • 38349184597 scopus 로고    scopus 로고
    • Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants
    • Pobigaylo, N., Szymczak, S., Nattkemper, T. M. and Becker, A. 2008, Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants, Mol. Plant Microbe. Interact., 21, 219-231.
    • (2008) Mol. Plant Microbe. Interact , vol.21 , pp. 219-231
    • Pobigaylo, N.1    Szymczak, S.2    Nattkemper, T.M.3    Becker, A.4
  • 22
    • 0037392230 scopus 로고    scopus 로고
    • Surface polysaccharide involvement in establishing the rhizobiumlegume symbiosis
    • Fraysse, N., Francois, C. and Véréna, P. 2003, Surface polysaccharide involvement in establishing the rhizobiumlegume symbiosis, FEBS J., 270, 1365-1380.
    • (2003) FEBS J , vol.270 , pp. 1365-1380
    • Fraysse, N.1    Francois, C.2    Véréna, P.3
  • 23
    • 17644425706 scopus 로고    scopus 로고
    • Nodule development induced by Mesorhizobium loti mutant strains affected in polysaccharide synthesis
    • D'Antuono, A. L., Casabuono, A., Couto, A., Ugalde, R. A. and Lepek, V. C. 2005, Nodule development induced by Mesorhizobium loti mutant strains affected in polysaccharide synthesis, Mol. Plant Microbe. Interact., 18, 446-457.
    • (2005) Mol. Plant Microbe. Interact , vol.18 , pp. 446-457
    • D'Antuono, A.L.1    Casabuono, A.2    Couto, A.3    Ugalde, R.A.4    Lepek, V.C.5
  • 24
    • 36549084663 scopus 로고    scopus 로고
    • The Mesorhizobium loti purB gene is involved in infection thread formation and nodule development in Lotus japonicus
    • Okazaki, S., Hattori, Y. and Saeki, K. 2007, The Mesorhizobium loti purB gene is involved in infection thread formation and nodule development in Lotus japonicus, J. Bacteriol., 189, 8347-8352.
    • (2007) J. Bacteriol , vol.189 , pp. 8347-8352
    • Okazaki, S.1    Hattori, Y.2    Saeki, K.3
  • 25
    • 27744564164 scopus 로고    scopus 로고
    • Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales
    • Guerrero, G., Peralta, H., Aguilar, A., et al. 2005, Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales, BMC Evol. Biol., 5, 55.
    • (2005) BMC Evol. Biol , vol.5 , pp. 55
    • Guerrero, G.1    Peralta, H.2    Aguilar, A.3
  • 26
    • 0022474397 scopus 로고
    • Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes
    • Finan, T. M., Kunkel, B., De Vos, G. F. and Signer, E. R. 1986, Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes, J. Bacteriol., 167, 66-72.
    • (1986) J. Bacteriol , vol.167 , pp. 66-72
    • Finan, T.M.1    Kunkel, B.2    De Vos, G.F.3    Signer, E.R.4
  • 27
    • 0016231913 scopus 로고
    • R factor transfer in Rhizobium leguminosarum
    • Beringer, J. E. 1974, R factor transfer in Rhizobium leguminosarum, J. Gen. Microbiol., 84, 188-198.
    • (1974) J. Gen. Microbiol , vol.84 , pp. 188-198
    • Beringer, J.E.1
  • 28
    • 0031869639 scopus 로고    scopus 로고
    • Plasposon: Modular self-clonig minitransposon derivatives for rapid genetic analysis of Gram-negative bacterial genomes
    • Dennis, J. J. and Zylstra, G. J. 1998, Plasposon: modular self-clonig minitransposon derivatives for rapid genetic analysis of Gram-negative bacterial genomes, Appl. Environ. Microbiol., 64, 2710-2715.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 2710-2715
    • Dennis, J.J.1    Zylstra, G.J.2
  • 29
    • 0021592032 scopus 로고
    • In vitro insertional mutagenesis with a selectable DNA fragment
    • Prentki, R and Kirsch, H. M. 1984, In vitro insertional mutagenesis with a selectable DNA fragment, Gene, 29, 303-313.
    • (1984) Gene , vol.29 , pp. 303-313
    • Prentki, R.1    Kirsch, H.M.2
  • 30
    • 0021027842 scopus 로고
    • A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in gram negative bacteria
    • Simon, R., Priefer, U. and Punier, A. 1983, A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria, Bio/Technology, 1, 784-791.
    • (1983) Bio/Technology , vol.1 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Punier, A.3
  • 31
    • 3042601400 scopus 로고    scopus 로고
    • Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo
    • Hunt, T. A., Kooi, C., Sokol, R A. and Valvano, M. A. 2004, Identification of Burkholderia cenocepacia genes required for bacterial survival in vivo, Infect. Immun., 72, 4010-4022.
    • (2004) Infect. Immun , vol.72 , pp. 4010-4022
    • Hunt, T.A.1    Kooi, C.2    Sokol, R.A.3    Valvano, M.A.4
  • 32
    • 23744497026 scopus 로고    scopus 로고
    • Lessons from signaturetagged mutagenesis on the infectious mechanisms of pathogenic bacteria
    • Autret, A and Charbit, A. 2005, Lessons from signaturetagged mutagenesis on the infectious mechanisms of pathogenic bacteria, FEMS Microbiol. Rev., 29, 703-717.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 703-717
    • Autret, A.1    Charbit, A.2
  • 33
    • 0037336665 scopus 로고    scopus 로고
    • Tn5 as a model for understanding DNA transposition
    • Reznikoff, W. S. 2003, Tn5 as a model for understanding DNA transposition, Mol. Microbiol., 47, 1199-1206.
    • (2003) Mol. Microbiol , vol.47 , pp. 1199-1206
    • Reznikoff, W.S.1
  • 34
    • 32044474842 scopus 로고    scopus 로고
    • A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments
    • Groh, J. L, Luo, Q., Ballard, J. D. and Krumholz, L. R. 2005, A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments, Appl. Environ. Microbiol., 71, 7064-7074.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7064-7074
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 35
    • 33646594074 scopus 로고    scopus 로고
    • High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library
    • Suzuki, N., Okai, N., Nonaka, H., Tsuge, Y., Inui, M. and Yukawa, H. 2006, High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library, Appl. Environ. Microbiol., 72, 3750-3755.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 3750-3755
    • Suzuki, N.1    Okai, N.2    Nonaka, H.3    Tsuge, Y.4    Inui, M.5    Yukawa, H.6
  • 37
    • 33749425658 scopus 로고    scopus 로고
    • Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway
    • Mormann, S., Lömker, A., Rückert, C., et al. 2006, Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway, BMC Genomics, 7, 205.
    • (2006) BMC Genomics , vol.7 , pp. 205
    • Mormann, S.1    Lömker, A.2    Rückert, C.3
  • 38
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
    • Rigoutsos, I. and Floratos, A 1998,Combinatorial pattern discovery in biological sequences: the TEIRESIAS algorithm, Bioinformatics, 14, 55-67.
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 39
    • 10744229659 scopus 로고    scopus 로고
    • Comprehensive transposon mutant library of Pseudomonas aeruginosa
    • Jacobs, M. A., Alwood, A., Thaipisuttikul, I., et al. 2003, Comprehensive transposon mutant library of Pseudomonas aeruginosa, Proc. Natl. Acad. Sci. USA, 100, 14339-14344.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 14339-14344
    • Jacobs, M.A.1    Alwood, A.2    Thaipisuttikul, I.3
  • 40
    • 33644504829 scopus 로고    scopus 로고
    • An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants
    • Liberati, N. T., Urbach, J. M., Miyata, S., et al. 2006, An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants, Proc. Natl. Acad. Sci. USA, 103, 2833-2838.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 2833-2838
    • Liberati, N.T.1    Urbach, J.M.2    Miyata, S.3
  • 41
    • 42949142245 scopus 로고    scopus 로고
    • A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1
    • de Berardinis, V., Vallenet, D., Castelli, V., et al. 2008, A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1, Mol. Syst. Biol., 4, 174.
    • (2008) Mol. Syst. Biol , vol.4 , pp. 174
    • de Berardinis, V.1    Vallenet, D.2    Castelli, V.3
  • 42
    • 0141504252 scopus 로고    scopus 로고
    • Gerdes, S. Y., Scholle, M. D., Campbell, J. W., et al. 2003, Experimental determination and system level analysis of essential genes in Escherichia coli MG1655, J. Bacteriol., 185, 5673-5684.
    • Gerdes, S. Y., Scholle, M. D., Campbell, J. W., et al. 2003, Experimental determination and system level analysis of essential genes in Escherichia coli MG1655, J. Bacteriol., 185, 5673-5684.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.