Detection of QTL for growth rate in the blacklip abalone (Haliotis rubra Leach) using selective DNA pooling

Animal Genetics

Volumn 39, Issue 6, 2008, Pages 606-614

  Baranski, M ^a,b,c   Rourke, M ^a   Loughnan, S ^a   Hayes, B ^a   Austin, C ^d   Robinson, N ^a,c  

^a DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^b DEAKIN UNIVERSITY   (Australia)

^c NOFIMA   (Norway)

^d CHARLES DARWIN UNIVERSITY   (Australia)

Author keywords

Abalone; Growth rate; Haliotis rubra; Quantitative trait loci; Selective DNA pooling

Indexed keywords

DNA; MICROSATELLITE DNA;

ANIMAL; ARTICLE; FEMALE; GASTROPOD; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; MALE; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS;

ANIMALS; DNA; FEMALE; GASTROPODA; GENETIC MARKERS; LINKAGE (GENETICS); MALE; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCI;

HALIOTIDAE; HALIOTIS RUBRA;

EID: 55949113046     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2008.01773.x     Document Type: Article

References (42)

1. Ashwell M.S., Rexroad C.E. Jr., Miller R.H., VanRaden P.M. Da Y. (1997) Detection of loci affecting milk production and health traits in an elite US Holstein population using microsatellite markers. Animal Genetics 28, 216 22.
2. Baranski M., Loughnan S., Austin C.M. Robinson N. (2006a) A microsatellite linkage map of the blacklip abalone, Haliotis rubra. Animal Genetics 37, 563 70.
3. Baranski M., Rourke M., Loughnan S., Austin C. Robinson N. (2006b) Isolation and characterization of 125 microsatellite DNA markers in the blacklip abalone, Haliotis rubra. Molecular Ecology Notes 6, 740 6.
4. Barbazuk W.B., Emrich S.J., Chen H.D., Li L. Schnable P.S. (2007) SNP discovery via 454 transcriptome sequencing. The Plant Journal 51, 910 8.
5. Churchill G.A. Doerge R.W. (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963 71.
6. Cobanoglu O., Berger P.J. Kirkpatrick B.W. (2005) Genome screen for twinning rate QTL in four North American Holstein families. Animal Genetics 36, 303 8.
7. Danzmann R.G. (2001) linkmfex: linkage analysis package for outcrossed mapping families with male or female exchange of the mapping parent. http://www.uoguelph.ca/∼rdanzman/software/LINKMFEX/
8. Darvasi A. Soller M. (1994) Selective DNA pooling for determination of linkage between a molecular marker and a quantitative trait locus. Genetics 138, 1365 73.
9. Elliott N.G. (2000) Genetic improvement programmes in abalone: what is the future? Aquaculture Research 31, 51 9.
10. Evans B., White R.W. Elliott N.G. (2000) Characterization of microsatellite loci in the Australian blacklip abalone (Haliotis rubra, Leach). Molecular Ecology 9, 1183 4.
11. Evans B., Conod N. Elliott N.G. (2001) Evaluation of microsatellite primer conservation in abalone. Journal of Shellfish Research 20, 1065 70.
12. Fisher P.J., Turic D., Williams N.M. et al. (1999) DNA pooling identifies QTLs on chromosome 4 for general cognitive ability in children. Human Molecular Genetics 8, 915 22.
13. Hara M. Kikuchi S. (1992) Increasing the growth rate of abalone, Haliotis discus hannai, using selection techniques. National Oceanic and Atmospheric Administration Technical Report National Marine Fisheries Service 106, 21 6.
14. Hayes B., Baranski M., Goddard M.E. Robinson N. (2007) Optimisation of marker assisted selection for abalone breeding programs. Aquaculture 265, 61 9.
15. Hubert S. Hedgecock D. (2004) Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168, 351 62.
16. Jonasson J., Stefansson S.E., Gudnason A. Steinarsson A. (1999) Genetic variation for survival and shell length of cultured red abalone (Haliotis rufescens) in Iceland. Journal of Shellfish Research 18, 621 5.
17. Kawahara I., Noro T., Omori M., Hasekura O. Kijima A. (1997) Genetic progress for growth in different selected populations of abalone, Haliotis discus hannai, at different hatcheries. Fish Genetics and Breeding Science 25, 81 90.
18. Knott S.A., Elsen J.M. Haley C.S. (1996) Methods for multiple marker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93, 71 80.
19. Li X. (2002) Selective breeding of farmed abalone to enhance growth rates II. In : Proceedings of the 9th Annual Abalone Aquaculture Workshop (Ed. by A.E. Fleming pp. 84 6. Fisheries Research and Development Corporation, Canberra.
20. Li G., Hubert S., Bucklin K., Ribes V. Hedgecock D. (2003) Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas. Molecular Ecology Notes 3, 228 32.
21. Lipkin E., Mosig M.O., Darvasi A., Ezra E., Shalom A., Friedmann A. Soller M. (1998) Quantitative trait locus mapping in dairy cattle by means of selective milk DNA pooling using dinucleotide microsatellite markers - analysis of milk protein percentage. Genetics 149, 1557 67.
22. Lipkin E., Fulton J., Cheng H., Yonash N. Soller M. (2002) Quantitative trait locus mapping in chickens by selective DNA pooling with dinucleotide microsatellite markers by using purified DNA and fresh or frozen red blood cells as applied to marker-assisted selection. Poultry Science 81, 283 92.
23. Liu X., Liu X. Zhang G. (2007) Identification of quantitative trait loci for growth-related traits in the Pacific abalone Haliotis discus hannai Ino. Aquaculture Research 38, 789 97.
24. Mariasegaram M., Robinson N.A. Goddard M.E. (2007) Empirical evaluation of selective DNA pooling to map QTL in dairy cattle using a half-sib design by comparison to individual genotyping and interval mapping. Genetics Selection Evolution 39, 267 83.
25. Meaburn E., Butcher L., Liu L., Fernandes C., Hansen V., Al-Chalabi A., Plomin R., Craig I. Schalkwyk L. (2005) Genotyping DNA pools on microarrays: tackling the QTL problem of large samples and large numbers of SNPs. BMC Genomics 6, 52.
26. Meuwissen T.H.E. Goddard M. (2000) Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci. Genetics 155, 421 30.
27. Meuwissen T.H.E., Karlsen A., Lien S., Olsaker I. Goddard M. (2002) Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics 161, 373 9.
28. Moen T., Agresti J.J., Cnaani A., Moses H., Famula T.R., Hulata G., Gall G.A.E. May B. (2004a) A genome scan of a four-way tilapia cross supports the existence of a quantitative trait locus for cold tolerance on linkage group 23. Aquaculture Research 35, 893 904.
29. Moen T., Hoyheim B., Munck H. Gomez-Raya L. (2004b) A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Animal Genetics 35, 81 92.
30. Mosig M.O., Lipkin E., Khutoreskaya G., Tchourzyna E., Soller M. Friedmann A. (2001) A whole genome scan for quantitative trait loci affecting milk protein percentage in Israeli-Holstein cattle, by means of selective milk DNA pooling in a daughter design, using an adjusted false discovery rate criterion. Genetics 157, 1683 98.
31. Sakamoto T., Danzmann R.G., Okamoto N., Ferguson M.M. Ihssen P.E. (1999) Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture 173, 1 4.
32. Sakamoto T., Danzmann R.G., Gharbi K. et al. (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331 45.
33. Seaton G., Haley C.S., Knott S.A., Kearsey M. Visscher P.M. (2002) qtl express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 18, 339 40.
34. Sekino M. Hara M. (2007) Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers. Genetics 175, 945 58.
35. Sham P., Bader J.S., Craig I., O'Donovan M. Owen M. (2002) DNA pooling: a tool for large-scale association studies. Nature Reviews Genetics 3, 862 71.
36. Somorjai I.M.L., Danzmann R.G. Ferguson M.M. (2003) Distribution of temperature tolerance quantitative trait loci in arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout (Oncorhynchus mykiss). Genetics 165, 1443 56.
37. Spielman R.S., McGinnis R.E. Ewens W.J. (1993) Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). American Journal of Human Genetics 52, 506 16.
38. Steemers F.J. Gunderson K.L. (2007) Whole genome genotyping technologies on the BeadArray platform. Biotechnology Journal 2, 41 9.
39. Sun X. Liang L. (2004) A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance. Aquaculture 238, 165 72.
40. Weller J.I., Song J.Z., Heyen D.W., Lewin H.A. Ron M. (1998) A new approach to the problem of multiple comparisons in the genetic dissection of complex traits. Genetics 150, 1699 706.
41. Witte J.S., Elston R.C. Schork N.J. (1996) Genetic dissection of complex traits. Nature Genetics 12, 355 6.
42. Yu Z. Guo X. (2006) Identification and mapping of disease-resistance QTLs in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture 254, 160 70.