A genome scan of a four-way tilapia cross supports the existence of a quantitative trait locus for cold tolerance on linkage group 23

Aquaculture Research

Volumn 35, Issue 9, 2004, Pages 893-904

  Moen, Thomas ^a   Agresti, Jeremy J ^b,d   Cnaani, Avner ^c,e   Moses, Hillary ^b   Famula, Thomas R ^b   Hulata, Gideon ^c   Gall, Graham A E ^b   May, Bernie ^b  

^a NOFIMA   (Norway)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c VOLCANI CENTER   (Israel)

^d MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^e UNIVERSITY OF NEW HAMPSHIRE   (United States)

Author keywords

Body weight; Cold; Linkage map; QTL; Tilapia; Tolerance

Indexed keywords

COLD TOLERANCE; FISH CULTURE; GENOME;

OREOCHROMIS; OREOCHROMIS AUREUS; OREOCHROMIS MOSSAMBICUS; OREOCHROMIS NILOTICUS; SAROTHERODON; SAROTHERODON GALILAEUS; TILAPIA;

EID: 3142539097     PISSN: 1355557X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2109.2004.01082.x     Document Type: Article

References (35)

1. Agresti J.J., Seki S., Cnaani A., Poompuang S., Hallerman E.M., Umiel N., Hulata G., Gall G.A.E. & May B. (2000) Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185, 43-56.
2. Behrends L.L., Kingsley J.B. & Bulls M. (1990) Cold tolerance in maternal mouthbrooding tilapias: phenotypic variation among species and hybrids. Aquaculture 85, 271-280.
3. Churchill G.A. & Doerge R.W. (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971.
4. Cnaani A., Gall G.A.E. & Hulata G. (2000) Cold tolerance of tilapia species and hybrids. Aquaculture International 8, 289-298.
5. Cnaani A., Hallerman E.M., Ron M., Weller J.I., Indelman M., Kashi Y., Gall G.A.E. & Hulata G. (2003) Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size, in an F2 tilapia hybrid. Aquaculture 223, 117-128.
6. Davis G.P. & DeNise S.K. (1998) The impact of genetic markers on selection. Journal of Animal Science 76, 2331-9.
7. Davis G.P. & Hetzel D.J.S. (2000) Integrating molecular genetic technology with traditional approaches for genetic improvement in aquaculture species. Aquaculture Research 31, 3-10.
8. Dekkers J.C. & Hospital F. (2002) The use of molecular genetics in the improvement of agricultural populations. Nature Reviews Genetics 3, 22-32.
9. Doyle J.J. & Doyle J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tipsier. Phytochemical Bulletin 19, 11-15.
10. Eknath A.E., Tayamen M.M., Palada-de Vera M.S., Danting J.C. & Reyes R.A. (1993) Genetic improvement of farmed tilapias: the growth performance of eight strains of Oreochromis niloticus tested in different farm environments. Aquaculture 111, 171-188.
11. Eknath A.E., Dey M.M., Rye M., Gjerde B., Abella T.A., Sevilleja R., Tayamen M.M., Reyes R.A. & Bentsen H.B. (1998) Selective breeding of Nile tilapia for Asia. Proceedings of the Sixth World Congress in Genetics Applied to Livestock Production 27, 89-96.
12. Fjalestad K.T., Moen T. & Gomez-Raya L. (2003) Prospects for genetic technology in salmon breeding programmes. Aquaculture Research 34, 397-406.
13. Freking B.A., Murphy S.K., Wylie A.A., Rhodes S.J., Keele J.W., Leymaster K.A., Jirtle R.L. & Smith T.P. (2002) Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals. Genome Research 12, 1496-1506.
14. Grisart B., Coppieters W., Farnir F., Karim L., Ford C., Berzi P., Cambisano N., Mni M., Reid S., Simon P., Spelman R., Georges M. & Snell R. (2002) Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Research 12, 222-231.
15. Khater A.A. & Smitherman R.O. (1988) Cold tolerance and growth of three strains of Oreochromis niloticus. In: The Second International Symposium on Tilapia in Aquaculture (ed. by R.S.V. Pullin, T. Bhukaswan, K. Tonguthai & J.L. Maclean). pp. 215-218. ICLARM. Manila, Philippines.
16. Knott S.A., Elsen J.M. & Haley C.S. (1996) Methods for multiplemarker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93, 71-80.
17. Kocher T.D., Lee W.-J., Sobolewska H., Penman D. & McAndrew B. (1998) A genetic linkage map of the Cichlid fish, the Tilapia (Oreochromis niloticus). Genetics 148, 1225-1232.
18. Lander E.S. & Kruglyak L. (1995) Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nature Genetics 11, 241-247.
19. Lynch M. & Walsh B. (1998) Genetics and Analysis of QuantitativeTraits, pp. 469-476. Sinauer Associates, Sunderland, MA, USA.
20. McConell S.K.J., Beynon J., Leamon J. & Skibinski D.O.F. (2000) Microsatellite marker based genetic linkage maps of Oreochromis aureus and Oniloticus (Cichlidae): extensive linkage group segment homologies revealed. Animal Genetics 31, 214-218.
21. Meuwissen T.H., Karlsen A., Lien S., Olsaker I. & Goddard M.E. (2002) Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics 161, 373-379.
22. Van Ooijen J.W. & Voorips R.E. (2001) Joinmap 3.0. Software for the calculation of genetic linkage maps. Wageningen, the Netherlands, Plant Research International.
23. Palti Y., Shirak A., Cnaani A., Hulata G., Avtalion R.R. & Ron M. (2002) Detection of genes with deleterious alleles in an inbred line of tilapia (Oreochromis aureus). Aquaculture 206, 151-164.
24. Poompuang S. & Hallerman E.M. (1997) Toward detection of quantitative trait loci and marker-assisted selection in fish. Reviews in Fisheries Science 5, 263-277.
25. Pullin R.S.V. (1991) Cichlids in aquaculture. In: Cichlid Fishes. Behaviour, Ecology and Evolution (ed. by M.H.A. Keenleyside), pp. 280-309. Chapman & Hall, London, UK.
26. Sarig S. (1993) The fish culture industry in Israel in 1992. Israeli Journal of Aquaculture - Bamidgeh 45, 105-112.
27. Seaton G., Haley C.S., Knott S.A., Kearsey M. & Visscher P.M. (2002) QTL express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 18, 339-340.
28. Shirak A., Palti Y., Cnaani A., Korol A., Hulata G., Ron M. & Avtalion R.R. (2002) Association between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia (Oreochromis aureus). Journal of Heredity 93, 270-276.
29. Sifa L., Chenhong L., Dey M., Gagalac F. & Dunham R. (2002) Cold tolerance of three strains of Nile tilapia, Oreochromis niloticus, in China. Aquaculture 213, 123-129.
30. Streelman J.T. & Kocher T.D. (2002) Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. Physiological Genomics 9, 1-4.
31. Takeda H., Takami M., Oguni T., Tsuji T., Yoneda K., Sato H., Ihara N., Itoh T., Kata S.R., Mishina Y., Womack J.E., Moritomo Y., Sugimoto Y. & Kunieda T. (2002) Positional cloning of the gene LIMBIN responsible for bovine chondrodysplastic dwarfism. Proceedings of the National Academy of Sciences USA 99, 10549-54.
32. Tave D., Jayprakas V. & Smitherman R.O. (1990) Effects of intraspecific hybridization in Tilapia nilotica on survival under ambient winter temperature in Alabama. Journal of the World Aquaculture Society 21, 201-204.
33. Visscher P.M., Thompson R. & Haley C.S. (1996) Confidence intervals in QTL mapping by bootstrapping. Genetics 143, 1013-20.
34. Weller J.I., Song J.Z., Heyen D.W., Lewin H.A. & Ron M. (1998) A new approach to the problem of multiple comparisons in the genetic dissection of complex traits. Genetics 150, 1699-1706.
35. Wu S.M., Hwang P.P., Hew C.L. & Wu J.L. (1998) Effect of antifreeze protein on cold tolerance in juvenile tilapia (Oreochromis mossambicus Peters) and milkfish (Chanos chanos Forsskal). Zoological Studies 37, 39-44.