Characterization of EST-derived microsatellites for gene mapping and evolutionary genomics in turbot

Animal Genetics

Volumn 39, Issue 6, 2008, Pages 666-670

  Bouza, C ^a   Hermida, M ^a   Millan A ^a   Vilas, R ^a   Vera, M ^a   Fernandez C ^a   Calaza, M ^a   Pardo, B G ^a   Martinez P ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

Expressed sequence tags mapping; Microsatellites; Scophthalmus maximus; Turbot; Type I markers

Indexed keywords

PRIMER DNA;

ANIMAL; ARTICLE; EVOLUTION; EXPRESSED SEQUENCE TAG; FLATFISH; GENETIC LINKAGE; GENETICS; GENOMICS; NUCLEOTIDE SEQUENCE;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; EVOLUTION; EXPRESSED SEQUENCE TAGS; FLATFISHES; GENOMICS; LINKAGE (GENETICS);

SCOPHTHALMIDAE; SCOPHTHALMUS MAXIMUS;

EID: 55949084021     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2008.01784.x     Document Type: Article

References (15)

1. Bouck A. Vision T. (2007) The molecular ecologist's guide to expressed sequence tags. Molecular Ecology 16, 907 24.
2. Bouza C., Hermida M., Pardo B.G. et al. (2007) A microsatellite genetic map in the turbot (Scopthalmus maximus). Genetics 177, 2457 67.
3. Chen S.L., Ma H.Y., Jiang Y., Liao X.L. Meng L. (2007) Isolation and characterization of polymorphic microsatellite loci from an EST library of turbot (Scophthalmus maximus) and cross-species amplification. Molecular Ecology Notes 7, 848 50.
4. Maneeruttanarungroj C., Pongsomboon S., Wuthisuthimethavee S. et al. (2006) Development of polymorphic expressed sequence tag-derived microsatellites for the extension of the genetic linkage map of the black tiger shrimp (Penaeus monodon). Animal Genetics 37, 363 8.
5. Martínez P., Hermida M., Pardo B.G., Fernández C., Castro J., Cal R.M., Álvarez-Dios J.A., Gómez-Tato A. Bouza C 2008) Centromere-linkage in the turbot (Scophthalmus maximus) through half-tetrad analysis in diploid meiogynogenetics. Aquaculture 280, 81 8.
6. Nei M 1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
7. Ng S.H.S., Chang A., Brown G.D., Koop B.F. Davidson W.S. (2005) Type I microsatellite markers from Atlantic salmon (Salmo salar) expressed sequence tags. Molecular Ecology Notes 5, 762 6.
8. van Oosterhout C., Hutchinson W.F., Wills D.P.M. Shipley P. (2004) micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4, 535 8.
9. Pardo B.G., Fernández C., Hermida M. et al. (2007) Development and characterization of 248 novel microsatellite markers in turbot (Scophthalmus maximus). Genome 50, 329 32.
10. Raymond M. Rousset F. (1995) genepop Version 1.2: population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248 9.
11. Rozen S. Skaletsky H.J 2000) primer3 on the WWW for general users and for biologist programmers. In : Bioinformatics Methods and Protocols: Methods in Molecular Biology (ed. by S. Krawetz S. Misener pp. 365 86. Humana Press, Totowa, NJ. Available at http://frodo.wi.mit.edu/primer3/primer3_code.html.
12. Serapion J., Kucuktas H., Feng J.N. Liu Z.J. (2004) Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus). Marine Biotechnology 6, 364 77.
13. Stam P. Van Ooijen J.W 1995) joinmap(TM) Version 2.0: Software for the Calculation of Genetic Linkage Maps. CPRO-DLO, Wageningen.
14. ®Version 3.0: Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen.
15. Vasemagi A., Nilsson J. Primmer C.R. (2005) Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.). Molecular Biology and Evolution 22, 1067 76.