-
1
-
-
0036850346
-
Deciphering the transcriptional histone acetylation code for a human gene
-
T. Agalioti, G. Chen and D. Thanos, Deciphering the transcriptional histone acetylation code for a human gene, Cell 111 (2002), 381-392.
-
(2002)
Cell
, vol.111
, pp. 381-392
-
-
Agalioti, T.1
Chen, G.2
Thanos, D.3
-
2
-
-
33847769541
-
Recognition of interferon-inducible sites, promoters, and enhancers
-
E.A. Ananko, Y.V. Kondrakhin, T.I. Merkulova and N.A.Kolchanov, Recognition of interferon-inducible sites, promoters, and enhancers, BMC Bioinformatics 8 (2007), 56.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 56
-
-
Ananko, E.A.1
Kondrakhin, Y.V.2
Merkulova, T.I.3
Kolchanov, N.A.4
-
3
-
-
55849147061
-
Programs for data input to the Transcription Regulatory Regions Database
-
ICG, Novosibirsk
-
E.A. Ananko, A.N. Naumochkin, O.N. Fokin and A.S. Frolov, Programs for data input to the Transcription Regulatory Regions Database, in Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure, (BGRS'98), ICG, Novosibirsk, (1998) 1, 29-32.
-
(1998)
Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure, (BGRS'98)
, vol.1
, pp. 29-32
-
-
Ananko, E.A.1
Naumochkin, A.N.2
Fokin, O.N.3
Frolov, A.S.4
-
4
-
-
0038320140
-
Consensus Sequence of Transcription Factor SF-1 Binding Site and Putative Binding Site in the 5;-Flanking Regions of Genes Encoding Mouse Steroidogenic Enzymes 3betaHSDI and Cyp17
-
T.V. Busygina, E.V. Ignatieva and A.V. Osadchuk, Consensus Sequence of Transcription Factor SF-1 Binding Site and Putative Binding Site in the 5;-Flanking Regions of Genes Encoding Mouse Steroidogenic Enzymes 3betaHSDI and Cyp17, Biochemistry (Mosc) 68 (2003), 377-384.
-
(2003)
Biochemistry (Mosc)
, vol.68
, pp. 377-384
-
-
Busygina, T.V.1
Ignatieva, E.V.2
Osadchuk, A.V.3
-
5
-
-
0036531897
-
Coactivators in transcription initiation: Here are your orders
-
M. Featherstone, Coactivators in transcription initiation: Here are your orders, Current Opinion in Genetics and Development 12 (2002), 149-155.
-
(2002)
Current Opinion in Genetics and Development
, vol.12
, pp. 149-155
-
-
Featherstone, M.1
-
7
-
-
34548452061
-
Experimental verification and analysis of regulatory regions of orthologous genes
-
Search for new binding sites for transcription factor SF-1 by the SITECON method:, in press
-
E.V. Ignatieva, N.V. Klimova, D. Yu. Oshchepkov, G.V. Vasiliev, T.I. Merkulova and N.A. Kolchanov, Search for new binding sites for transcription factor SF-1 by the SITECON method: Experimental verification and analysis of regulatory regions of orthologous genes, Dokl Biochem Biophys (2007), in press.
-
(2007)
Dokl Biochem Biophys
-
-
Ignatieva, E.V.1
Klimova, N.V.2
Oshchepkov, D.Y.3
Vasiliev, G.V.4
Merkulova, T.I.5
Kolchanov, N.A.6
-
8
-
-
55849083598
-
Artsite database: Comparison of in vitro selected and natural binding sites of eukaryotic transcription factorst
-
N. Kolchanov and R. Hofestaedt, eds, Springer Science & Business Media, Inc
-
T. Khlebodarova, O. Podkolodnaya, D. Oshchepkov, D. Miginsky, E. Ananko and E. Ignatieva, Artsite database: Comparison of in vitro selected and natural binding sites of eukaryotic transcription factorst, in: Bioinformatics of Genome Regulation and Structure II, N. Kolchanov and R. Hofestaedt, eds, Springer Science & Business Media, Inc., 2006, pp. 55-65.
-
(2006)
Bioinformatics of Genome Regulation and Structure II
, pp. 55-65
-
-
Khlebodarova, T.1
Podkolodnaya, O.2
Oshchepkov, D.3
Miginsky, D.4
Ananko, E.5
Ignatieva, E.6
-
9
-
-
33747163311
-
Recognition of the potential SF-1 binding sites by SiteGA method, their experimental verification and search for new SF-1 target genes
-
N.V. Klimova, V.G. Levitskii, E.V. Ignat'eva, G.V. Vasil'ev, V.F. Kobzev, T.V. Busygina, T.I. Merkulova and N.A. Kolchanov, Recognition of the potential SF-1 binding sites by SiteGA method, their experimental verification and search for new SF-1 target genes, Mol Biol (Mosk) 40 (2006), 512-523.
-
(2006)
Mol Biol (Mosk)
, vol.40
, pp. 512-523
-
-
Klimova, N.V.1
Levitskii, V.G.2
Ignat'eva, E.V.3
Vasil'ev, G.V.4
Kobzev, V.F.5
Busygina, T.V.6
Merkulova, T.I.7
Kolchanov, N.A.8
-
10
-
-
0032926610
-
-
N.A. Kolchanov, E.A. Ananko, O.A. Podkolodnaya, E.V. Ignatieva, I.L Stepanenko, O.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, T.N. Goryachkovskaya, T.V. Busygina, F.A. Kolpakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database (TRRD):iTs status in 1999, Nucleic Acids Research 27 (1999), 303-306.
-
N.A. Kolchanov, E.A. Ananko, O.A. Podkolodnaya, E.V. Ignatieva, I.L Stepanenko, O.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, T.N. Goryachkovskaya, T.V. Busygina, F.A. Kolpakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database (TRRD):iTs status in 1999, Nucleic Acids Research 27 (1999), 303-306.
-
-
-
-
11
-
-
18744421759
-
-
N.A. Kolchanov, O.A. Podkolodnaya, E,.A. Ananko, E.V. Ignatieva, I.L Stepanenko, O.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, T.N. Goryachkovskaya, T.V. Busygina, F.A. Kolpakov, N.L. Podkolodny, A.N. Naumochkin, I.M. Korostishevskaya, A.G. Romashchenko and G.C. Overton, Transcription regulatory regions database (TRRD): Its status in 2000, Nucleic Acids Research 28 (2000), 298-301.
-
N.A. Kolchanov, O.A. Podkolodnaya, E,.A. Ananko, E.V. Ignatieva, I.L Stepanenko, O.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, T.N. Goryachkovskaya, T.V. Busygina, F.A. Kolpakov, N.L. Podkolodny, A.N. Naumochkin, I.M. Korostishevskaya, A.G. Romashchenko and G.C. Overton, Transcription regulatory regions database (TRRD): Its status in 2000, Nucleic Acids Research 28 (2000), 298-301.
-
-
-
-
12
-
-
18444387984
-
-
N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L Stepanenko, T.I. Merkulova, M.A Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database (TRRD): Its status in 2002, Nucleic Acids Research 30 (2002), 312-317.
-
N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L Stepanenko, T.I. Merkulova, M.A Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin and A.G. Romashchenko, Transcription Regulatory Regions Database (TRRD): Its status in 2002, Nucleic Acids Research 30 (2002), 312-317.
-
-
-
-
14
-
-
55849113071
-
-
V. Levitsky, E. Ignatieva, G. Vasiliev, N. Klimova, T. Busygina, T. Merkulova and N. Kolchanov, The SiteGA tool for recognition and context analysis of transcription factor binding sites: Significant dinucleotide features besides the canonical consensus exemplified by SF-1 binding site, in: Bioinformatics of Genome Regulation and Structure II, N. Kolchanov and R. Hofestaedt, eds, Springer Science+Business Media, Inc., 2005, pp. 31-41.
-
V. Levitsky, E. Ignatieva, G. Vasiliev, N. Klimova, T. Busygina, T. Merkulova and N. Kolchanov, The SiteGA tool for recognition and context analysis of transcription factor binding sites: Significant dinucleotide features besides the canonical consensus exemplified by SF-1 binding site, in: Bioinformatics of Genome Regulation and Structure II, N. Kolchanov and R. Hofestaedt, eds, Springer Science+Business Media, Inc., 2005, pp. 31-41.
-
-
-
-
15
-
-
33748369644
-
Method SiteGA for transcription factor binding sites recognition
-
V.G. Levitsky, E.V. Ignatieva, E.A. Ananko, T.I. Merkulova, N.A. Kolchanov and T.C. Hodgman, Method SiteGA for transcription factor binding sites recognition, Biofizika 51 (2006), 633-639.
-
(2006)
Biofizika
, vol.51
, pp. 633-639
-
-
Levitsky, V.G.1
Ignatieva, E.V.2
Ananko, E.A.3
Merkulova, T.I.4
Kolchanov, N.A.5
Hodgman, T.C.6
-
16
-
-
0027257981
-
Developmental aspects of glucocorticoid regulation of polycyclic aromatic hydrocarbon-inducible enzymes in rat liver
-
M.W. Linder and R.A. Prough, Developmental aspects of glucocorticoid regulation of polycyclic aromatic hydrocarbon-inducible enzymes in rat liver, Archives of Biochemistry and Biophysics 302 (1993), 92-102.
-
(1993)
Archives of Biochemistry and Biophysics
, vol.302
, pp. 92-102
-
-
Linder, M.W.1
Prough, R.A.2
-
17
-
-
18144419362
-
Regulation of DNA methyltransferase 1 by the pRb/E2F1 pathway
-
M.T. McCabe, J.N. Davis and M.L. Day, Regulation of DNA methyltransferase 1 by the pRb/E2F1 pathway, Cancer Research 65 (2005), 3624-3632.
-
(2005)
Cancer Research
, vol.65
, pp. 3624-3632
-
-
McCabe, M.T.1
Davis, J.N.2
Day, M.L.3
-
18
-
-
0039844391
-
Structure and regulated expression of the delta-Aminolevulinate synthase gene from Drosophila melanogaster
-
R.I. de Mena, M. Fernandez-Moreno, B. Bornstein, L.S. Kaguni and R. Garesse, Structure and regulated expression of the delta-Aminolevulinate synthase gene from Drosophila melanogaster, The Journal of Biological Chemistry 274 (1999), 37321-37328.
-
(1999)
The Journal of Biological Chemistry
, vol.274
, pp. 37321-37328
-
-
de Mena, R.I.1
Fernandez-Moreno, M.2
Bornstein, B.3
Kaguni, L.S.4
Garesse, R.5
-
19
-
-
3242879525
-
SITECON: A tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition
-
D.Y. Oshchepkov, E.E.Vityaev, D.A. Grigorovich, E.V. Ignatieva and T.M. Khlebodarova, SITECON: A tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition, Nucleic Acids Research 32 (2004), W208-W212.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Oshchepkov, D.Y.1
Vityaev, E.E.2
Grigorovich, D.A.3
Ignatieva, E.V.4
Khlebodarova, T.M.5
-
20
-
-
0035516379
-
-
O.A. Podkolodnaia, V.G. Levitskii and N.L. Podkolodnyi, Locus-controlling regions: Description in the LCR-TRRD data base, Molekuliarnaia Biologiia 35= (2001), 943-951.
-
O.A. Podkolodnaia, V.G. Levitskii and N.L. Podkolodnyi, Locus-controlling regions: Description in the LCR-TRRD data base, Molekuliarnaia Biologiia 35= (2001), 943-951.
-
-
-
-
21
-
-
0348062819
-
The impact of in silico primer extension
-
The Eukaryotic Promoter Database EPD
-
C.D. Schmid, V. Praz, M. Delorenzi, R. Perier and P. Bucher, The Eukaryotic Promoter Database EPD: The impact of in silico primer extension, Nucleic Acids Research 32 (2004), D82-D85.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Schmid, C.D.1
Praz, V.2
Delorenzi, M.3
Perier, R.4
Bucher, P.5
-
22
-
-
0035514336
-
Apoptosis and response to heat shock of interference gene networks
-
in Russian
-
I.L. Stepanenko, Apoptosis and response to heat shock of interference gene networks, Mol Biol (Mosk) 35 (2001), 1063-1071 (in Russian).
-
(2001)
Mol Biol (Mosk)
, vol.35
, pp. 1063-1071
-
-
Stepanenko, I.L.1
-
23
-
-
1342305500
-
Apoptosis gene network: Description in the GeneNet and TRRD databases
-
I. Stepanenko and N. Kolchanov, Apoptosis gene network: Description in the GeneNet and TRRD databases, Ann N Y Acad Sci 1010 (2003), 16-18.
-
(2003)
Ann N Y Acad Sci
, vol.1010
, pp. 16-18
-
-
Stepanenko, I.1
Kolchanov, N.2
-
24
-
-
55849110869
-
Reactive oxygen species regulate gene networks of stress response
-
in Russian
-
I.L.Stepanenko. Reactive oxygen species regulate gene networks of stress response, Ekologicheskay Genetika 2 (2004), 4-12 (in Russian).
-
(2004)
Ekologicheskay Genetika
, vol.2
, pp. 4-12
-
-
Stepanenko, I.L.1
-
25
-
-
33644878173
-
MPromDb: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data
-
H. Sun, S.K. Palaniswamy, T.T. Pohar, V.X. Jin, T.H. Huang and R.V. Davuluri, MPromDb: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data, Nucleic Acids Research 34 (2006), D98-D103.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Sun, H.1
Palaniswamy, S.K.2
Pohar, T.T.3
Jin, V.X.4
Huang, T.H.5
Davuluri, R.V.6
-
26
-
-
0347756647
-
DBTSS, DataBase of Transcriptional Start Sites
-
Nucleic Acids Research
-
Y. Suzuki, R. Yamashita, S. Sugano and K, Nakai, DBTSS, DataBase of Transcriptional Start Sites: Progress report 2004, Nucleic Acids Research 32 (2004), D78-D81.
-
(2004)
Progress report 2004
, vol.32
-
-
Suzuki, Y.1
Yamashita, R.2
Sugano, S.3
Nakai, K.4
-
27
-
-
23144456436
-
A web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters
-
ARGO
-
O.V. Vishnevsky and N.A. Kolchanov, ARGO: A web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters, Nucleic Acids Research 33 (2005), W417-W422.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Vishnevsky, O.V.1
Kolchanov, N.A.2
|