Search for new binding sites for the transcriptional factor SF-1 by the SITECON method: Experimental verification and analysis of regulatory regions of orthologous genes

Doklady Biochemistry and Biophysics

Volumn 415, Issue 1, 2007, Pages 165-169

  Ignat'eva, E V ^b   Klimova, N V ^b   Oshchepkov, D Yu ^b   Vasil'ev, G V ^b   Merkulova, T I ^b   Kolchanov, N A ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; OLIGONUCLEOTIDE; STEROIDOGENIC FACTOR 1; TRANSCRIPTION FACTOR;

ALGORITHM; ANIMAL; ARTICLE; BINDING SITE; COMPUTER INTERFACE; CONFORMATION; DNA SEQUENCE; FACTUAL DATABASE; GENETICS; INTERNET; METABOLISM; RAT; REGULATORY SEQUENCE; SEQUENCE ALIGNMENT; SWINE;

ALGORITHMS; ANIMALS; BINDING SITES; DATABASES, FACTUAL; DNA-BINDING PROTEINS; INTERNET; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; RATS; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; STEROIDOGENIC FACTOR 1; SWINE; TRANSCRIPTION FACTORS; USER-COMPUTER INTERFACE;

EID: 34548452061     PISSN: 16076729     EISSN: None     Source Type: Journal    
DOI: 10.1134/S1607672907040011     Document Type: Article

References (15)

1. Gelfand, M.S., J. Comput. Biol., 1995, vol. 2, no. 1, pp. 87-115.
2. Bucher, P., Curr. Opin. Srtuct. Biol., 1999, vol. 9, pp. 400-407.
3. Elnitsky, L., Jin, V.X., Farnham, P.J., and Jones, S.J.M., Genome Res., 2006, pp. 1-10.
4. Li, X., Zhong, S., and Wong, W.H., Proc. Natl. Acad. Sci. USA, 2005, vol. 102, no. 47, pp. 16945-16950.
5. Chang, L.W., Nagarajan, R., Magee, J.A., et al., Genome Res., 2006, vol. 16, no. 3, pp. 405-413.
6. Roulet, E., Fisch, I., Junier, T., et al., Silico Biol., 1998, vol. 1, no. 1, pp. 21-28.
7. Val, P., Lefrancois-Martinez, A.M., Veyssiere, G., and Martinez, A., Nucl. Rec., 2003, vol. 1, pp. 8-45.
8. Busygina, T.V., Ignat'eva, E.V., and Osadchuk, A.V., Biokhimiya, 2003, vol. 68, pp. 467-476.
9. Oshchepkov, D.Y., Vityaev, E.E., Grigorovich, D.A., et al., Nucl. Acids Res., 2004, vol. 32, pp. 208-212.
10. Oshchepkov, D.Yu., Turnaev, I.I., Pozdnyakov, M.A., et al., in Bioinformatics of Genome Regulation and Structure, Boston: Kluwer, 2004, pp. 93-102.
11. Kolchanov, N.A. Ignatieva, E.V., Ananko, E.A., et al., Nucl. Acids Res., 2002, vol. 30, pp. 312-317.
12. Klimova, N.V., Levitskii, V.G., Ignat'eva, E.V., et al., Mol. Biol., 2006, vol. 40, no. 3, pp. 512-523.
13. Dermitzakis, E.T. and Clark, A.G., Mol. Biol. Evolut., 2002, vol. 19, no. 7, pp. 1114-1121.
14. Frith, M.C., Ponjavic, J., Fredman, D., et al., Genome Res., 2006, vol. 16, no. 6, pp. 713-722.
15. Berezikov, E., Guryev, V., and Cuppen, E., Nucl. Acids Res., 2005, vol. 33, pp. 447-450.