Taxonomic analysis of Sorangium strains based on HSP60 and 16S rRNA gene sequences and morphology

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 11, 2008, Pages 2654-2659

  Jiang, De Ming ^a   Zhao, Lin ^a   Zhang, Cui Ying ^a   Li, Jian ^a   Xia, Zhi Jie ^a   Wang, Jing ^a   Wu, Zhi Hong ^a   Li, Yue Zhong ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN; HEAT SHOCK PROTEIN 60; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; GENE AMPLIFICATION; GENE FUNCTION; GENE SEQUENCE; GENETIC CONSERVATION; LIFE CYCLE; MICROBIAL MORPHOLOGY; MYXOCOCCALES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SORANGIUM; SORANGIUM CELLULOSUM; TAXONOMY;

BACTERIAL PROTEINS; CHAPERONIN 60; DNA, BACTERIAL; GENES, RRNA; MOLECULAR SEQUENCE DATA; MYXOCOCCALES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

MYXOCOCCALES; POLYANGIUM CELLULOSUM; SORANGIUM;

EID: 55849115984     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65806-0     Document Type: Article

References (19)

1. Dahl, J. L., Tengra, F. K., Dutton, D., Yan, J., Andacht T. M., Coyne, L., Windell, V. & Garza, A. G. (2007). Identification of major sporulation proteins of Myxococcus xanthus using a proteomic approach. J Bacteriol 189, 3187-3197.
2. Felsenstein, J. (2001). PHYLIP (phylogeny inference package) version 3.61. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
3. Gerth, K., Pradella, S., Perlova, O., Beyer, S. & Muller, R. (2003). Myxobacteria: proficient producers of novel natural products with various biological activities - past and future biotechnological aspects with the focus on the genus Sorangium. J Biotechnol 106, 233-253.
4. Goh, S. H., Potter, S., Wood, J. O., Hemmingsen, S. M., Reynolds, R. P. & Chow, A. W. (1996). HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. J Clin Microbiol 34, 818-823.
5. Goyal, K., Qamra, R. & Mande, S. C. (2006). Multiple gene duplication and rapid evolution in the groEL gene: functional implications. J Mol Evol 63, 781-787.
6. Hou, P. B., Li, Y. Z., Wu, B. H., Yen, Z. C., Yen, B. X. & Gao, P. J. (2006). Cellulolytic complex exists in cellulolytic myxobacterium Sorangium. Enzyme Microb Technol 38, 273-278.
7. Karlin, S. & Brocchieri, L. (2000). Heat shock protein 60 sequence comparisons: duplications, lateral transfer, and mitochondrial evolution. Proc Natl Acad Sci U S A 97, 11348-11353.
8. Kumar, S., Tamura, K & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analyis and sequence alignment. Brief Bioinform 5, 150-163.
9. Li, Y. Z., Hu, W., Zhang, Y. O., Oiu, Z, Zhang, Y. & Wu, B. H. (2002). A simple method to isolate salt-tolerant myxobacteria from marine samples. J Microbiol Methods 50, 205-209.
10. Lin, Z. & Rye, H. S. (2006). GroEL-mediated protein folding: making the impossible, possible. Crit Rev Biochem Mol Biol 41, 211-239.
11. AL. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2139-2144. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
12. Otani, M., Tabata, J., Ueki, T., Sano, K. & Inouye, S. (2001). Heat-shock-induced proteins from Myxococcus xanthus. J Bacteriol 183, 6282-6287.
13. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, pp. 1059-1072. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
14. Reichenbach, H. & Dworkin, M. (1992). The myxobacteria. In The Prokaryotes, 2nd edn, pp. 3416-3487. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
15. Sambrook J. & Russell, D. W. (2001). Molecular Cloning. a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
16. Schneiker, S., Periova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., Bekel, T., Beyer, S. & other authors (2007). Complete genome sequence of the myxobacteriurn Sorangium cellulosum. Nat Biotechnol 25, 1281-1289.
17. Shimkets, L. J., Dworkin, M. & Reichenbach, H. (2006). The myxobacteria. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 31-115. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
19. Yan, Z. C., Wang, B., Li, Y. Z., Gong, X, Zhang, H. O. & Gao, P. J. (2003). Morphologies and phylogenetic classification of cellulolytic myxobacteria. Syst Appl Microbiol 26, 104-109.