Curtobacterium ginsengisoli sp. nov., isolated from soil of a ginseng field

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 10, 2008, Pages 2393-2397

  Kim, Myung Kyum ^a   Kim, Yu Jin ^a   Kim, Ho Bin ^a   Kim, Se Young ^a   Yi, Tae Hoo ^a   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CURTOBACTERIUM ALBIDUM; CURTOBACTERIUM CITREUM; CURTOBACTERIUM FLACCUMFACIENS; CURTOBACTERIUM GINSENGISOLI; CURTOBACTERIUM HERBARUM; CURTOBACTERIUM LUTEUM; CURTOBACTERIUM PUSILLUM; DNA CONTENT; GINSENG; GINSENG FIELD; GRAM POSITIVE BACTERIUM; INCUBATION TEMPERATURE; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPIC VARIATION; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SOIL; TAXONOMIC RANK; TEMPERATURE;

ACTINOMYCETALES; AGRICULTURE; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; PANAX; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); CURTOBACTERIUM; CURTOBACTERIUM ALBIDUM; CURTOBACTERIUM CITREUM; CURTOBACTERIUM FLACCUMFACIENS; CURTOBACTERIUM HERBARUM; CURTOBACTERIUM LUTEUM; CURTOBACTERIUM PUSILLUM; MICROBACTERIACEAE; PANAX GINSENG; POSIBACTERIA;

EID: 55849083529     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65591-0     Document Type: Article

References (24)

1. Aizawa, T., Ve, N. B., Kimoto, K, Iwabuchi, N, Sumida, H., Hasegawa, I., Sasaki, S., Tamura, T., Kudo, T. & other authors (2007). Curtobacterium ammoniigenes sp. nov., an ammonia-producing bacterium isolated from plants inhabiting acidic swamps in actual acid sulfate soil areas of Vietnam. Int J Syst Evol Microbial 57, 1447-1452.
2. Behrendt U., Ulrich, A., Schumann, P., Naumann, D. & Suzuki, K. (2002). Diversity of grass-associated Microbacteriaceae isolated from the phyllosphere and litter layer after mulching the sward; polyphasic characterization of Subtercola pratensis sp. nov., Curtobacterium herbarum sp. nov. and Plantibacter flavus gen. nov., sp. nov. Int J Syst Evol Microbiol 52, 1441-1454.
3. Buck J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
4. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
5. Dorofeeva, L. V., Evtushenko, L. I., Krausova, V. I., Karpov, A. V., Subbotin, S. A. & Tredje, J. M. (2002). Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively. Int J Syst Evol Microbiol 52, 1917-1923.
6. Dunleavy, J. M. (1989). Curtobacterium plantarum sp. nov. is ubiquitous in plant leaves and is seed transmitted in soybean and corn. Int J Syst Bacteriol 39, 240-249.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution b 39, 783-791.
8. Gavini, F., Mergaert J., Beji, A., Mielcarek, C., Izard, D., Kersters, K. & De Ley, J. (1989). Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov. Int J Syst Bacteriol 39, 337-345.
9. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
10. Hedges, F. (1922). A bacterial wilt of the bean caused by Bacterium flaccumfaciens nov. sp. Science 55, 433-434.
11. Kim, M. K, Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in x-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
12. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
13. Kumar, S., Tamura, K, Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Park Y. H., Suzuki, K., Yim, D. G., Lee, K. C., Kim E., Yoon, J., Kim, S., Kho, Y. H., Goodfellow, M. & Komagate, K. (1993). Suprageneric classification of peptidoglycan group B-actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwnhoek 64, 307-313.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogcnetic trees. Mol Biol Evol 4, 406-425.
17. Sasaki, J., Chijimatsu, M. & Suzuki, K. (1998). Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wan peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov. Int J Syst Bacteriol 48, 403-410.
18. T. J Microbiol Biotechnol 6, 68-69.
19. Suzuki, K., Sasaki, J., Uramoto, M, Nakase, T. & Komagata, K. (1997). Cryobacterium psychrophilum gen. nov., sp. nov., nom. rev., comb. nov., an obligately psychrophilic actinomycete to accommodate " Curtobacterium psychrophilum" Inoue and Komagata 1976. Int J Syst Bacteriol 47, 474-478.
20. Takeuchi, M. & Hatano, K. (1998). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-747.
21. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
22. Thompson, J. D., Gibson, T. J. Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Weisburg, W. G., Barns, S. M, Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
24. Yamada, K. & Komagata, K. (1972). Taxonomic studies on coryneform bacteria. V. Classification of coryneform bacteria. J Gen Appl Microbiol 18, 417-431.