The qSD12 locus controls offspring tissue-imposed seed dormancy in rice

Genetics

Volumn 179, Issue 4, 2008, Pages 2263-2273

  Gu, Xing You ^a   Turnipseed, E Brent ^a   Foley, Michael E ^b  

^a SOUTH DAKOTA STATE UNIVERSITY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENDOSPERM; EVOLUTIONARY ADAPTATION; GENE EXPRESSION; GENE FREQUENCY; GENE FUNCTION; GENE LOCUS; GENE MAPPING; GENE SEGREGATION; GENETIC HETEROGENEITY; GENOTYPE; GERMINATION; LIFE CYCLE; MOLECULAR CLONING; PLANT DEVELOPMENT; PLANT SEED; PRIORITY JOURNAL; PROGENY; QUANTITATIVE TRAIT LOCUS; RICE; SEED DORMANCY; TISSUE SPECIFICITY; CHROMOSOME MAP; GENETICS; GROWTH, DEVELOPMENT AND AGING; INHERITANCE; PLANT CHROMOSOME; PRENATAL DEVELOPMENT;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; GENOTYPE; GERMINATION; INHERITANCE PATTERNS; ORYZA SATIVA; QUANTITATIVE TRAIT LOCI; SEEDS;

EID: 55749115103     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.092007     Document Type: Article

References (52)

1. ALONSO-BLANCO, C., L. BENTSINK, C. J. HANHART, H. B. E. VRIES and M. KOORNNEEF, 2003 Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics 164: 711-729.
2. ANDERSON, J. A., M. E. SORRELLS and S. D. TANKSLEY, 1993 RFLP analysis of genomic regions associated with resistance to pre-harvest sprouting in wheat. Crop Sci. 33: 453-459.
3. BENTSINK, L., J. JOWETT, C. J. HANHART and M. KOORNNEEF, 2006 Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 17042-17047.
4. BEWLEY, J. D., 1997 Seed germination and dormancy. Plant Cell 9: 1055-1066.
5. BEWLEY, J. D., and M. BLACK, 1994 Seeds: Physiology of Development and Germination. Plenum Press, New York.
6. CAI, H. W., and H. MORISHIMA, 2000 Genomic regions affecting seed shattering and seed dormancy in rice. Theor. Appl. Genet. 100: 840-846.
7. DONG, Y., E. TSOZUKI, H. KAMIUNTEN, H. TERAO, D. LIN et al., 2003 Identification of quantitative trait loci associated with preharvest sprouting resistance in rice (Oryza sativa L.). Field Crops Res. 81: 133-139.
8. FLINTHAM, J. E., 2000 Different genetic components control coat-imposed and embryo-imposed dormancy in wheat. Seed Sci. Res. 10: 43-50.
9. FOLEY, M. E., 1992 Effect of soluble sugars and gibberellic acid in breaking dormancy of excised wild oat (Avena fatua) embryos. Weed Sci. 40: 208-214.
10. GEALY, D. R., D. H. MITTEN and J. N. RUTGER, 2003 Gene flow between red rice (Oryza sativa) and herbicide-resistant rice (O. sativa): implications for weed management. Weed Tech. 17: 627-645.
11. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2004 Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics 166: 1503-1516.
12. GU, X.-Y., S. F. KIANIAN, G. A. HARELAND, B. L. HOFFER and M. E. FOLEY, 2005 Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sative L.). Theor. Appl. Genet. 110: 1108-1118.
13. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2006a Isolation of three dormancy QTLs from weedy rice as Mendelian factors. Heredity 96: 93-99.
14. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2006b Dormancy genes from weedy rice respond divergently to seed development environments. Genetics 172: 1199-1211.
15. GUBLER, F., A. A. MILLAR and J. V. JACOBSEN, 2005 Dormancy release, ABA and pre-harvest sprouting. Curr. Opin. Plant Biol. 8: 183-187.
16. GUO, L., L. ZHU, Y. XU, D. ZENG, P. WU et al., 2004 QTL analysis of seed dormancy in rice (Oryza sativa L.). Euphytica 140: 155-162.
17. HAN, F., S. E. ULLRICH, J. A. CLANCY and I. ROMOGOSA, 1999 Inheritance and fine mapping of a major barley seed dormancy QTL. Plant Sci. 143: 113-118.
18. HARLAN, J. R., J. M. J. DE WET and E. G. PRICE, 1973 Comparative evolution of cereals. Evolution 27: 311-325.
19. INTERNATIONAL RICE GENOME SEQUENCING PROJECT, 2005 The map-based sequence of the rice genome. Nature 436: 793-800.
20. JOHNSON, L. P. V., 1935 The inheritance of delayed germination in hybrids of Avena fatua and A. sativa. Can. J. Res. 13: 367-387.
21. KAO, C.-H., and Z.-B. ZENG, 2002 Modeling epistasis of quantitative trait loci using Cockerham's model. Genetics 160: 1243-1261.
22. LANGEVIN, S. A., K. CLAY and J. B. GRACE, 1990 The incidence and effects of hybridization between cultivated rice and its related weed red rice (Oryza sativa L.). Evolution 44: 1000-1008.
23. LAN, X.-J., Y.-M. WEI, D. C. LIU, Z.-H. YAN and Y.-L. ZHENG, 2005 Inheritance of seed dormancy in Tibetan semi-wild wheat accession Q1028. J. App. Genet. 46: 133-138.
24. LEE, S.-J., C.-S. OH, J.-P. SUH, S. R. MCCOUCH and S.-N. AHN, 2005 Identification of QTL for domestication-related and agronomic traits in an Oryza sativa X O. rufipogon BC1F7 population. Plant Breed. 124: 209-219.
25. LI, C., A. ZHOU and T. SANG, 2006 Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara. New Phytol. 170: 185-193.
26. LIN, S.-Y., T. SASAKI and M. YANO, 1998 Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor. Appl. Genet. 96: 997-1003.
27. LINCOLN, S., M. DALY and E. LANDER, 1992 Constructing Genetic Maps with MAPMAKER/EXP 3.0, Ed. -3. Whitehead Institute, Cambridge, MA.
28. LYTTLE, T. W., 1991 Segregation distorters. Annu. Rev. Genet. 25: 511-557.
29. MCCOUCH, S. R., L. TEYTELMAN, Y. XU, K. B. LOBOS, K. CLARE et al., 2002 Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
30. MO, H., 1988 Genetic expression for endosperm traits, pp. 478-487 in Proceedings of the Second International Conference on Quantitative Genetics. Sinauer Associates, Sunderland, MA.
31. MORRIS, C. F., J. M. MOFFATT, R. G. SEARS and G. M. PAULSEN, 1989 Seed dormancy and responses of caryopses, embryos, and calli to abscisic acid in wheat. Plant Physiol. 90: 643-647.
32. NAIR, V. G., B. W. X. PONNAIYA and V. S. RAMAN, 1965 Studies on seed dormancy in certain short-duration rice varieties. India J. Agric. Sci. 35: 234-246.
33. 1 seeds of reciprocal crosses in common wheat. Can. J. Plant Sci. 2: 153-187.
34. OKA, H. I., 1988 Origin of Cultivated Rice. Japan Scientific Society Press, Tokyo.
35. RHA, E.-S., F.-S. THSENG and S.-T. WU, 1994 Distorted segregation of Acp-1 for acid phosphase in a wide cross of rice. Rice Genet. Newsl. 11: 106.
36. ROMAGOSA, I., F. HAN, J. A. CLANCY and E. ULLRICH, 1999 Individual locus effects on dormancy during seed development and after ripening in barley. Crop Sci. 39: 74-79.
37. ROZEN, S., and H. J. SKALETSKY, 2000 Primer3 on the WWW for general users and for biologist programmers, pp. 365-386 in Bioinformatics Methods and Protocols: Methods in Molecular Biology, edited by S. KRAWETZ, and S. MISENER. Humana Press, Totowa, NJ (http://frodo.wi.mit.edu/cgi-bin/primer3/primer3-www.cgi).
38. SAS INSTITUTE, 1999 Statview Reference Manual. SAS Institute, Cary, NC.
39. SESHU, D. V., and M. E. SORRELLS, 1986 Genetic studies on seed dormancy in rice, pp. 369-382 in Rice Genetics: Proceedings of the International Rice Genetics Symposium, edited by INTERNATIONAL RICE RESEARCH INSTITUTE. Manila, Philippines.
40. SESHU, D. V., and M. DADLANI, 1991 Mechanism of seed dormancy in rice. Seed Sci. Res. 1: 187-194.
41. SIMPSON, G. M., 1990 Seed Dormancy in Grasses. Cambridge University Press, Cambridge, UK.
42. SQUIRE, G. R., B. MARSHALL, G. DUNLOP and G. WRIGHT, 1997 Genetic basis of rate-temperature characteristics for germination in oilseed rape. J. Exp. Bot. 48: 869-875.
43. TAKAHASHI, N., 1963 Studies on the dormancy of wild rice seeds. Part 2. Role of seed coat, embryo and endosperm in dormant seeds, pp. 75-85 in The 241st Report of the Institute for Agricultural Research. Tohoku University, Sendai, Japan.
44. TAYLOR, D. R., and P. K. INGVARSSON, 2003 Common features of segregation distortion in plants and animals. Genetica 117: 27-35.
45. TEMNYKH, S., G. DECLERCK, A. LUKASHOVA, L. LIPOVICH, S. CARTINHOUR et al., 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11: 1441-1452.
46. THOMSON, M. J., T. H. TAI, A. M. MCCLUNG, X. H. LAI, M. E. HINGA et al., 2003 Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor. Appl. Genet. 107: 479-493.
47. TINKER, N. A., and D. E. MATHER, 1995 MQTL: software for simplified composite interval mapping of QTL in multiple environments. J. Agr. Genomics 1: 2.
48. ULLRICH, S. E., P. M. HAYES, W. E. DYER, T. K. BLAKE and J. A. CLANCY, 1993 Quantitative trait locus analysis of seed dormancy in 'Steptoe' barley, pp. 136-145 in Pre-harvest Sprouting in Cereals, edited by M. K. Walker-Simmons and J. L. Ried. American Association of Cereal Chemists, St. Paul, MN.
49. VOGL, C., and S. XU, 2000 Multipoint mapping of viability and segregation distorting loci using molecular markers. Genetics 155: 1439-1447.
50. WAN, J. M., L. JIANG, J. Y. TANG, C. M. WANG, M. Y. HOU et al., 2006 Genetic dissection of the seed dormancy trait in cultivated rice (Oryza sativa L.). Plant Sci. 170: 786-792.
51. WAN, J. M., Y. J. CAO, C. M. WANG and H. IKEHASHI, 2005 Quantitative trait loci associated with seed dormancy in rice. Crop Sci. 45: 712-716.
52. XU, Y., L. ZHU, J. XIAO, N. HUANG and S. R. MCCOUCH, 1997 Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol. Gen. Genet. 253: 535-545.